Pure rotational spectrum and structural determination of silacyclopentane

The ground state pure rotational spectrum of silacyclopentane (SCP) has been investigated using both Fourier Transform Microwave (FTMW) and chirped pulse Fourier Transform Microwave (cp-FTMW) spectroscopies. In addition to the parent species, the spectra of the ¹³C, ²⁹Si and ³⁰Si singly-substituted isotopologues were recorded in the 6–24 GHz region in natural abundance. Structural analysis confirms that the ground state has C₂ symmetry and the geometric parameters determined based on heavy atom substitution include the bond distances, bond angles and dihedral angles of the SCP ring backbone.     

The microwave spectrum and structure of fulvene

The microwave spectra of four ¹³C and two monodeutero species of fulvene have been recorded and analysed. Earlier data for the parent species has also been slightly refined. The final structure which emerges for fulvene is essentially three weakly coupled ethylenic entities with bond lengths: C₁C₂ = 1.470Å C₂C₃ = 1.355Å, C₃C₄ = 1.476Å and C₁C₆ = 1.3485Å. The CH bond distances and ring angles are close to expected values.     

Methyl torsional state analysis of the jet-cooled microwave spectrum of N-acetylglycine

The microwave spectrum of N-acetylglycine was obtained using a NIST Fourier-transform microwave spectrometer equipped with a heated, pulsed-nozzle source. One conformer has been identified and its spectrum assigned. The conformer has C_S point group symmetry and an intramolecular hydrogen bond between the carbonyl and amide groups of the 5-membered glycine unit. Internal rotation of the methyl rotor group leads to splitting of the rotational lines into A and E symmetry tunneling states. The ¹⁴N nuclear-quadrupole hyperfine structure verifies the rotational and internal-rotor state assignments. The V₃ barrier of 57.5(1) cm⁻¹ and the angles between the C₃ axis of the methyl rotor and the principal inertial axes are in best agreement with the calculated values for the lowest energy conformer of the four conformers predicted at the MP2/6-311++G(d,p) level of theory.     

FT‐Raman,FT‐IR spectra and DFT calculations on monomeric and dimeric structures of 5‐fluoro‐ and 5‐chloro‐salicylic acid

The experimental and theoretical study on the structures and vibrations of 5‐fluoro‐salicylic acid and 5‐chloro‐salicylic acid (5‐FSA and 5‐ClSA, C₇H₅FO₃ and C₇H₅ClO₃) is presented. The Fourier transform infrared spectra (4000–400 cm⁻¹) and the Fourier transform Raman spectra (4000–50 cm⁻¹) of the title molecules in the solid phase were recorded. The molecular structures, vibrational wavenumbers, infrared intensities, Raman intensities and Raman scattering activities were calculated for a pair of molecules linked by the intermolecular O H···O hydrogen bond. The geometrical parameters and energies of 5‐FSA and 5ClSA were obtained for all eight conformers/isomers from density functional theory (DFT) (B3LYP) with 6‐311++G(d,p) basis set calculations. The computational results identified the most stable conformer of 5‐FSA and 5‐ClSA as the C1 form. The complete assignments were performed on the basis of the total energy distribution (TED) of the vibrational modes, calculated with scaled quantum mechanics (SQM) method. The spectroscopic and theoretical results were compared with the corresponding properties for 5‐FSA and 5‐ClSA monomers and dimer of C1 conformer. The optimized bond lengths, bond angles and calculated wavenumbers showed the best agreement with the experimental results. Copyright © 2010 John Wiley & Sons, Ltd.     

Structural impact on the methano bridge in norbornadiene, norbornene and norbornane

An electronic structural study of the ground electronic states for the chemically similar bicyclic norbornadiene (NBD, C₇H₈, X¹A₁), norbornene (NBN, C₇H₁₀, X¹A′) and norbornane (NBA, C₇H₁₂, X¹A₁) molecules is provided quantum mechanically. Initially, the unique orbital imaging capability of electron momentum spectroscopy is used to validate which of the quantum mechanical models available to us for these calculations best represents these species. Thereafter, individual molecular point group symmetry is incorporated in the calculations with energy minimization in the search for equilibrium geometries of the species using MP2/TZVP and B3LYP/TZVP models. The optimized geometries compare favourably with available crystallographic results and also build confidence in cases where the crystallographic results are ambiguous. The present study aims to reveal the particular subtle structural deviation of the species, which results in significant molecular property differences among these organic compounds. This work intends to probe bonding information of the species and the impact, on the seven member carbon skeleton, as the CC double bonds of NBD are progressively saturated by hydrogen atoms to give NBN and NBA. Significant changes observed through the present work include: (i) the seven member carbon skeleton tends to relax the strain whenever possible and (ii) the ethano ring experiences greater structural changes than the methano bridge. The methano bridge (C₍₁₎-C₍₇₎-C₍₄₎) of the less symmetric NBN molecule (C_s) tilts to the single C-C bond side of the ethano ring of the molecule (rather than the CC side), producing a dihedral angle of 8.7° between plane H-C₍₁₎-C₍₄₎ (the yz-plane) and plane C₍₁₎-C₍₇₎-C₍₄₎. Our work suggests that it is this unique dihedral angle in NBN which causes the molecules exo-reactivity and is also responsible for the extra activity of its CC bond.     

Structural conformations and electronic interactions of the natural product,oroxylin: a vibrational spectroscopic study

The oroxylin, 5,7‐dihydroxy 6‐methoxy flavone is a potent natural product extracted from ‘Vitex peduncularis’. Density functional theory (DFT) at B3LYP/6‐311G(d,p) level has been used to compute energies of different conformers of oroxylin to find out their stability, the optimized geometry of the most stable conformer and its vibrational spectrum. The conformer ORLN‐1 with torsion angles 0, 180, 180 and 0 degrees, respectively, for H₁₃ O₁₂ C₆ C₅, H₁₄ O₁₀ C₄ C₅, H₁₃ O₁₂ C₆ C₅ and H₁₄ O₁₀ C₄ C₅ is found to be most stable. The optimized geometry reveals that the dihedral angle φ between phenyl ring B and the chrome part of the molecule in − 19.21° is due to the repulsive force due to steric interaction between the ortho‐hydrogen atom H₂₉ of the B ring and H₁₈ of the ring C (H₂₉·H₁₈ = 2.198 Å). A vibrational analysis based on the near‐infrared Fourier transform(NIR‐FT) Raman, Fourier transform‐infrared (FT‐IR) and the computed spectrum reveals that the methoxy group is influenced by the oxygen lone pair‐aryl p_z orbital by back donation. Hence the stretching and bending vibrational modes of the methoxy group possess the lowest wavenumber from the normal values of methyl group. The carbonyl stretching vibrations have been lowered due to conjugation and hydrogen bonding in the molecules. The intramolecular H‐bonding and nonbonded intramolecular interactions shift the band position of O₁₀ H₁₄ and O₁₂ H₁₃ stretching modes, which is justified by DFT results. Copyright © 2008 John Wiley & Sons, Ltd.     

Gas‐phase structure and new vibrational study of methyl trifluoroacetate (CF3C(O)OCH3)

The molecular structure of methyl trifluoroacetate (CF₃C(O)OCH₃) has been determined in the gas phase from electron‐diffraction data supplemented by ab initio (MP2) and DFT calculations using different basis sets. Experimental data revealed an anti conformation with a dihedral angle θ (CCOC) = 180°. Quantum mechanical calculations indicate the possible existence of two conformers, differing by a rotation about the C(O) O bond. The global minimum represents a C_s‐symmetric structure in which the CF₃ group has the anti orientation with respect to the CH₃ group, but there is another potential minimum, much higher in energy, representing a C_s‐symmetric structure with a cis conformation. The preference for the anti conformation was studied using the total energy scheme and the natural bond orbital (NBO) partition scheme. Additionally, the total potential energy has been deconvoluted using a six‐fold decomposition in terms of a Fourier‐type expansion, showing that the electrostatic and steric contributions are dominant in stabilizing the anti conformer. Infrared spectra of CF₃C(O)OCH₃ were obtained for the gaseous and liquid phases, while the Raman spectrum was recorded for the liquid phase. Harmonic vibrational frequencies and a scaled force field have been calculated, leading to a final root mean‐square deviation of 9 cm⁻¹ when comparing experimental and calculated frequencies. Copyright © 2009 John Wiley & Sons, Ltd.     

苯及其取代物中孪位偶合常数2JCCH的 最大键级杂化轨道研究

在前文工作的基础上,本文结合MNDO分子轨道方法和最大键级杂化轨道方法研究得到了计算苯及其取代物中孪位偶合常数     

Conformation effects on the molecular orbitals of serine

This paper calculates the five most stable conformers of serine with Hartree--Fock theory, density functional theory (B3LYP), Moller--Plesset perturbation theory (MP4(SDQ)) and electron propagation theory with the 6-311++G(2d,2p) basis set. The calculated vertical ionization energies for the valence molecular orbitals of each conformer are in agreement with the experimental data, indicating that a range of molecular conformations would coexist in an equilibrium sample. Information of the five outer valence molecular orbitals for each conformer is explored in coordinate and momentum spaces using dual space analysis to investigate the conformational processes, which are generated from the global minimum conformer Ser1 by rotation of C₂--C₃ (Ser4), C₁--C₂ (Ser5) and C₁--O₂ (Ser2 and Ser3). Orbitals 28a, 27a and 26a are identified as the fingerprint orbitals for all the conformational processes.     

Microwave spectrum, molecular structure, and theoretical calculation of cyclohexanone oxime (chair form)

The microwave spectra of cyclohexanone oxime and d₁ (=NOD) and d₄(2,2,6,6-d₄) derivatives were observed in the frequency range from 8 to 40 GHz in the ground and excited vibrational states. The rotational constants were determined to be A = 3799.844(48), B = 1513.7912(23), and C = 1189.6118(29) MHz for normal species, A = 3791.835(88), B = 1461.0324(47), and C = 1157.5653(53) MHz for d₁ species, and A = 3364.141(49), B = 1487.9551(34), and C = 1154.0965(44) MHz for d₄ species in the ground vibrational state. The planar moments, P_bb (P_bb = (I_c + I_a − I_b)/2) of normal, d₁, and d₄ species were determined to be 111.9885(26), 111.9817(46), and 124.2394(49) uŲ, respectively. The almost same values of P_bb of normal and d₁ species suggest that the hydroxyl hydrogen atom is very close to the a-c plane. From the r_s coordinates of the hydroxyl hydrogen atom, the OH bond was found to be at the trans position with respect to the CN double bond. The conformation of cyclohexanone oxime was determined to be chair form by comparing the observed and calculated rotational constants, ΔI, and planar moments, and taking account of the calculated the relative energy difference, ΔE. The structural parameters, the three bond lengths, three bond angles, and three dihedral angles, were adjusted to the nine rotational constants observed. The bond angle of ∠C₂C₁N is much wider than that of ∠C₆C₁N by about 10°. The dihedral angles of ∠C₁C₂C₃C₄, ∠C₂C₃C₄C₅, and ∠C₃C₄C₅C₆ were determined to be 53.3(5), −57.2(5), and 57.2(5)°. Two vibrational modes were assigned to the ring-bending and ring-twisting ones, which are almost harmonic up to v = 3.     

二面角弯曲异构体：M2Pt20/-团簇的理论研究

本文采用密度泛函理论和波函数理论研究了M₂Pt₂^0/-团簇(M表示碱土金属元素)在气相中的几何结构和电子性质. 研究表明,拥有平面结构的D_2h异构体比拥有较小二面角及较短Pt-Pt键长的C_2v异构体更稳定. M(s,p)与Pt(5d)的相互作用和Pt-Pt共价键之间的相互竞争导致了这两种异构体在稳定性方面有所不同. M(s,p)与Pt(5d)的相互作用支持D_2h异构体的平面结构;Pt-Pt共价键作用导致了C_2v异构体的弯曲结构. Be₂Pt₂的单重态和三重态的势能曲线有两个不同的交点,但是Ra₂Pt₂和Ca₂Pt₂^-的不同多重度的势能曲线间只有一个交点,这可能是由于三重态Ra₂Pt₂和四重态Ca₂Pt₂^-较平坦的势能曲线造成的. 上述结果揭示了一个拥有最小原子数的二面角弯曲异构现象,并且为解释其他潜在的角度弯曲异构体提供了理论帮助.     

The vibrational levels of C2H2 using an internal coordinate vibrational hamiltonian

A vibrational (J = 0) hamiltonian has been derived using the method of Sutcliffe, for tetra-atomic molecules, in terms of three bond lengths and three bond angles. An analysis of the angle dependent parts of this hamiltonian is given. Suitable expansion functions for vibrational calculations with this hamiltonian are discussed. An application to find the low lying vibrational levels of C₂H₂ using the potential surface of Halonen et al. is described.     

Hydrocarbon ions with triplet ground states

The N.M.R. spectra of meta dichloro and meta dibromo benzenes are analysed in the nematic phase of 4-methoxy benzylidene-4-amino-α-methyl cinnamic acid-n-propyl ester at room temperature.

The direct couplings are found to be of negative sign. The molecules orient preferentially with the aromatic plane along the direction of the magnetic field and the C ₂-symmetry axis perpendicular to it.

The relations between the various direct couplings and the inter-proton distances are reported. The ratio of the distance between the meta protons along the axis perpendicular to the C ₂ symmetry and the ortho protons is determined precisely. The other ratios could not be determined to any reasonable precision. The reasons are discussed.

The angles between the C-H bonds of the equivalent protons and the C-C bonds in both the molecules are determined on the assumption of the C-H bond lengths and the ring geometry of benzene.     

从头计算研究CH3C(O)OSSOC(O)CH3的构型和能量

采用从头计算B3LYP,MP3和MP4方法结合Aug-cc-pVDZ基组研究了CH₃C(O)OSSOC(O)CH₃最稳定的五种构象及其阳离子构型.理论计算了五种稳定构象的转动常数和偶极矩;运用电子传播子理论P3近似方法计算稳定构象外价壳层轨道的电离能,计算结果与光电子能谱实验结果符合的较好.根据构象的相对能量以及理论模拟电离能谱和实验光电子能谱之间的比较,说明在气相光电子能谱实验中至少存在两种构象.与中性构型相比,电离后的五种阳离子构型均发生了明显的结构弛豫,尤 关键词： 构象 电离能 相对能量 光电子能谱     

First-principles electronic transport properties study of small carbon clusters: Cyclic C6

The transport properties of the six-atom carbon ring cluster C₆ sandwiched between Al(100) electrodes have been investigated by first-principles nonequilibrium Green's function technique. Our results demonstrate that the transport properties of monocyclic C₆ with D3h symmetry, with alternating bond angles, the most stable C₆ isomer, show metallic conductance. The charge transfer between the central molecule and the electrodes is very important for its transport properties. We also compare the equilibrium transmission spectra for C₆ in different isomers.     

A theoretical conformational study on the structural parameters involved in the ring strain of exo-unsaturated four-membered heterocycles,Y = CCH2CH2X

The effect of ring-puckering angle on the structural parameters (bond lengths and angles) involved in the ring strain of a series of four-membered heterocycles (1–16) was theoretically demonstrated by using the ab initio methods MP2 and HF, and the DFT methods PBE1PBE, B3LYP, SVWN5 with 6-31+G(d,p) as basis set. The results revealed that the bonds within the ring (C–X and C–C) are the most sensitive to puckering angle changes. The variation of the C–X and C=Y bond lengths as function of puckering angle are determined by a balance between the 1,3 repulsive interactions and the electronic nature of the heteroatoms X and Y. Particularly, for azetidines and phosphetanes, the C–X and C=Y bond lengths exhibit a major increase at axial conformations. In general, the C–C bond length decreases with the puckering angle for all heterocycles. While the heteroatom–H bonds (in the ring skeleton) are very sensitive to geometric changes, exhibiting an increasing behaviour for equatorial conformations and a decreasing behaviour for axial conformations highly puckered (? > ?20°). The C–X–C angle decreases monotonically with the puckering angle, increasing the Baeyer strain on the studied molecules. Finally, all methods predicted a similar behaviour for the studied parameters as function of the puckering angle, although some smaller differences in the predictions of their respective values, especially at HF level, were observed.     

Geometrical Model for Phenylthallium Dihalides

The geometry of the phenylthallium dihalides, PhTlX₂(X=F, Cl or Br) which has heitherto been unknown, has been proposed on the basis of several qualitative aspects and quantitative arguments. These molecules have a planar structure with C_2v symmetry and the ring geometry has been assumed to be the same as that of benzene. The ring-substituent bond length has been taken to be 2.218 A° in all the three molecules, and the Tl-F, Tl-Cl and Tl-Br bond lengths in respective molecules have been estimated to be 1.878, 2.366 and 2.520 A°. The remaining parameter inter-bond angle, F-Tl-F has been taken to be 116° in PhTlF₂, whereas, angles Cl-Tl-Cl and Br-Tl-Br in respective molecules have been taken to be 120°, as expected in the case of a pure sp² hybridization.     

Introducing boranorcaradienes with more stability than their corresponding borepins: Reversal of tautomerization via substituents at theoretical levels

In contrast to typical borepins, which appear about 40.0 kcalmol^?1 more stable than their corresponding tautomeric boranorcaradienes, we have found 2 species, which have reversed this trend and pushed the equilibrium in favor of their corresponding boranorcaradienes. They are namely 1a,9b‐dihydro‐1H‐borireno[2,3‐h]pyridazino[4,3‐f]cinnoline and 1a,9b‐dihydro‐1H‐borireno[2,3‐h]pyrimido[5,4‐f]quinazoline which stand up among 14 isomeric systems probed, at B3LYP/AUG‐cc‐pVTZ, M06‐2X/AUG‐cc‐pVTZ, MP2/AUG‐cc‐pVTZ, and HF/AUG‐cc‐pVTZ. Energy barriers are calculated in gas‐phase, where the possibility of a rapid interconversion of the isomers is ruled out. Generally, dibenzoboranorcaradienes assume C_s symmetry with planar geometry and dihedral angle of zero degree. In contrast, their corresponding borepins show a high tendency for puckering with dihedral angle of ~66°. The preference of the latter for puckered non‐planar geometries is evidenced by natural bonding orbitals calculations and visually through their frontier molecular orbitals. Main interactions appear to be hyperconjugations of σ and π bonds across the rings. Position and number of nitrogen atoms on the fused rings seem to affect the energy gap, dipole moment, symmetry, dihedral angle, the chemical shift, NICS, bond lengths, and charge distribution.     

On the relative intensities of the Raman active fundamentals,r0 structural parameters,and pathway of chair–boat interconversion of cyclohexane and cyclohexane‐d12

Raman spectra of liquid cyclohexane, C₆H₁₂, and deuterated cyclohexane, C₆D₁₂, were recorded with both parallel and perpendicular polarizations. The observed vibrational wavenumbers, depolarization ratios, and their intensities were measured and compared with the corresponding predicted values as well as the experimental values previously reported. The conformational energetics were obtained with the Møller–Plesset perturbation method to the second order [MP2(full)] as well as with density functional theory by the B3LYP method utilizing a variety of basis sets. The average ab initio predicted difference in energy between the more stable chair form (D_3d) and the less stable twisted‐boat form (D₂) is 2213 cm⁻¹ (26.47 kJ/mol), with a similar value of 2223 cm⁻¹ (26.59 kJ/mol) from the density function theory calculations. By using two dihedral angles as variables, we calculated the chair–boat interconversion pathway for cyclohexane at the MP2(full)/6‐31G(d) level. The harmonic force constants, Raman intensities, depolarization values, and the potential energy distribution were predicted from both MP2(full) and B3LYP calculations with the 6‐31G(d) basis set and compared with the experimental values for the chair form when available. The ‘adjusted’ r₀ structural parameters were obtained from MP2/6‐311 + G(d,p) calculations and previously reported microwave rotational constants of five isotopomers of cyclohexane: i.e. 1,1‐d₂, ¹³C‐1,1‐d₂, 1,1,2,2,3,3‐d₆, and d₁ (equatorial and axial). The determined distances in Å are: r(CC) = 1.536(3), r(CH)_ax = 1.098(1); r(CH)_eq = 1.095(1); and the angles in degrees: ∠CCH_ax = 108.8(3); ∠CCH_eq = 110.2(3); ∠CCC = 111.1(3); and ∠HCH = 107.6(3) with dihedral angle ∠CCCC = 55.7(3). These values are compared with those previously reported and it is found that the difference in the r₀ distances (0.003 Å) between the two CH values is much smaller than the difference (0.008 Å) previously reported for the r_s values. Copyright © 2008 John Wiley & Sons, Ltd.     

Analytical energy gradients for local second-order Møller-Plesset perturbation theory using intrinsic bond orbitals

ABSTRACT

We present the theory and an implementation for PAO-LMP2 analytical energy gradients (local second-order Møller-Plesset perturbation theory with domains of projected atomic orbitals), using intrinsic bond orbitals (IBOs). The accuracy of optimised LMP2 geometry parameters relative to canonical MP2 and CCSD(T) ones is benchmarked for more than 100 small- to medium-sized molecules. Using augmented triple-ζ basis sets, the deviations of computed LMP2 bond lengths and bond angles from the corresponding MP2 ones are small and quickly decrease with increasing domain sizes. For small domains, a systematic compensation between the intrinsic error of MP2 and the errors due to the local approximations is found, so that the LMP2 results deviate less from CCSD(T) than the MP2 ones. On the other hand, with extended domains, the differences between LMP2 and MP2 geometry parameters become negligible.