Dielectric inserts for sensitivity and RF magnetic field enhancement in NMR volume coils

A method for enhancing the signal to noise ratio (SNR) in NMR volume coils is described. By introducing inserts made of low-loss, high dielectric constant material into specific locations in the coil, the SNR can often be enhanced by up to 20%, while B₁ homogeneity is hardly affected. A model for predicting the limit of the SNR improvement is also presented. The model accurately predicts the SNR gain obtained in both numerical simulations and experiment. An experiment was conducted on a mini-MRI system. Experimental results are in very good agreement with the simulations in regard to both SNR improvement and B₁ enhancement in transmission. Inserts made of ultra high dielectric constant materials can be as thin as few millimeters, thus, conveniently fitting into existing coil-sample gaps in volume coils.     

Near-infrared characterization of N-tertiobutoxycarbonyl-L amino acids.

The near-infrared absorption spectra of open-chain secondary amides and smallring lactams have revealed the sensitivity of certain NH combination bands to conformation of the amide grouping^1,3 more specifically to the cis and trans conformations of the secondary amide grouping². Some near-infrared characteristics of the peptide groups have been reported a long time ago^4,5 but despite their biological interest, no data are available for N-tertiobutoxycarbonyl amino acids. In this work, the near infiared spectra of the following molecules have been investigated in the solid state and in carbon tetrachloride solution.     

Magnesium chloride: an efficient 13C NMR relaxation agent for amino acids and some carboxylic acids

A series of amino acids and carboxylic acids were determined by 13C NMR spectroscopy. The results showed that addition of 3 M MgCl(2), led to shortening of relaxation time and 13C NMR integral area of samples was well proportional to the number of carbon atoms with reliability more than 95%. So MgCl(2) is proposed as an efficient relaxation agent for analysis of amino acids and some carboxylic acids.     

Optical nuclear polarization for sensitivity enhancement of2H NMR single-crystal studies

A gain in detection sensitivity of more than three orders of magnitude is achieved in high-resolution solid-state²H nuclear magnetic resonance of monocrystalline fluorene-d₁₀ by applying optical nuclear polarization via excited triplet states of acridine-h₉ guest molecules. The sensitivity gain is utilized to measure the angular dependence (rotation pattern) of the²H nuclear magnetic resonance lines. In this way the principal values and orientations of all²H quadrupolar tensors are determined. Except for the methylene deuterons, all tensors belonging to the same molecule have one principal axis in common, namely the axis perpendicular to the molecular plane, showing that in the crystal lattice the fluorene molecule is in a planar configuration.     

A solid-state N magic-angle spinning NMR study of some amino acids

Experimental strategies for the acquisition of high-quality 14N magic-angle spinning (MAS) NMR spectra of the simple amino acids, which exhibit 14N quadrupole coupling constants (C(Q)) on the order of 1.2 MHz, are devised. These are the first useful 14N MAS spectra reported for nitrogen compounds having a C(Q)(14N) value in excess of 1 MHz. The complete manifolds of spinning sidebands (ssbs), i.e., about 300 ssbs for a spinning frequency of 6.0 kHz, have been observed in the 14N MAS NMR spectra of a series of amino acids. In their crystal structure these amino acids all exhibit the zwitterionic form and thus the 14N MAS NMR spectra represent those of a rotating -NH(3)(+) group and not of an amino (-NH(2)) group. Computer simulations combined with fitting of simulated to the experimental ssb intensities result in the determination of precise values for the 14N quadrupole coupling (C(Q)) and its associated asymmetry parameter (eta(Q)) for the nitrogen sites in these molecules. For some of the amino acids the 14N MAS NMR spectra exhibit overlap between the manifolds of ssbs from two different nitrogen sites in accordance with their crystal structures. Computer analysis of these spectra results in two different sets of (C(Q), eta(Q)) values which mainly differ in the magnitudes for eta(Q).     

Electron spin resonance of radicals in X-irradiated single crystals of N-substituted amino acids

Angular distribution measurements of KX reactive scattering of a potassium dimer K₂ beam by allyl and alkyl halides are reported. The centre of mass differential cross sections are uncertainly determined but distinctly different from the rebound cross sections exhibited by K+CH₃I, C₂H₅I atom reactions. This change of dynamics may be rationalized in terms of the transfer of both K₂ valence electrons to the halide molecule. The reaction products seem likely to be a potassium halide and a potassium alkyl or allyl molecule.     

Improvement of resolution in solid state NMR spectra with J-decoupling: an analysis of lineshape contributions in uniformly 13C-enriched amino acids and proteins

In magic angle spinning (MAS) NMR spectra of highly and uniformly 13C,15N-enriched amino acids and proteins, homo-nuclear coupling interactions contribute significantly to the 13C linewidths, particularly for moderate applied magnetic field strengths and sample spinning frequencies. In this work, we attempted to dissect, analyze, and control the contributions of J-coupling and residual homo-nuclear dipolar coupling interactions to the linewidths of uniformly 13C,15N-enriched crystalline alanine; these studies were carried out at 9.4 T using a range of spinning frequencies from 5 to 15 kHz. The anisotropic second-order dipolar shifts and the J-splittings are comparable in their contribution to the linewidths, but behave very differently in terms of experimental protocols for line narrowing. In contrast to the J-coupling interactions, the second-order dipolar broadening cannot be refocused using selective pulses on the passively coupled spin. We carried out experiments to remove or refocus the 13C J-coupling interactions (omega1 J-decoupling) using a selective DANTE pulse in the center of the indirect evolution period. Inversion profiles and bandwidths of selective DANTE pulses acting on transverse magnetization, in the regime of moderate spinning frequencies, were characterized computationally and experimentally. A dramatic improvement in the resolution of the 2D spectrum was achieved when this decoupling protocol was employed.     

NMR chemical shifts in amino acids: effects of environments in the condensed phase

We present calculations of NMR chemical shifts in crystalline phases of some representative amino acids such as glycine, alanine, and alanyl-alanine. We explore the effects of environment on the chemical shifts in selected glycine geometries ranging from the crystalline phase to completely isolated molecules. In the crystalline and dilute molecular limits, the calculated distinct NMR chemical shifts are attributed to intermolecular hydrogen-bonds and dipole electric field effects, respectively.     

Field cycling by fast NMR probe transfer: Design and application in field-dependent CIDNP experiments

A novel field-cycling unit with fast digital positioning of a high-resolution nuclear magnetic resonance probe in a spatially varying magnetic field is described and used to measure CIDNP spectra of the amino acid-dye (histidine-bipyridyl) photoreaction system in the range between 0 and 7 T. The pattern of nuclear polarization varies with the magnetic field. In particular, strong polarization with an emission/absorption pattern (multiplet effect) is found at low field for two histidine ringprotons with scalar coupling below 3 Hz visible only because of the high resolution made possible by the new field-cycling setup. Also for the CH₂ protons in the β-position a multiplet effect is observed having a pattern changing with magnetic field. By analysis of the spin nutation the non-Boltzmann population differences of the nuclear levels have been determined.     

Improvement of resolution in solid state NMR spectra with J-decoupling: an analysis of lineshape contributions in uniformly C-enriched amino acids and proteins

In magic angle spinning (MAS) NMR spectra of highly and uniformly 13C,15N-enriched amino acids and proteins, homo-nuclear coupling interactions contribute significantly to the 13C linewidths, particularly for moderate applied magnetic field strengths and sample spinning frequencies. In this work, we attempted to dissect, analyze, and control the contributions of J-coupling and residual homo-nuclear dipolar coupling interactions to the linewidths of uniformly 13C,15N-enriched crystalline alanine; these studies were carried out at 9.4 T using a range of spinning frequencies from 5 to 15 kHz. The anisotropic second-order dipolar shifts and the J-splittings are comparable in their contribution to the linewidths, but behave very differently in terms of experimental protocols for line narrowing. In contrast to the J-coupling interactions, the second-order dipolar broadening cannot be refocused using selective pulses on the passively coupled spin. We carried out experiments to remove or refocus the 13C J-coupling interactions (omega1 J-decoupling) using a selective DANTE pulse in the center of the indirect evolution period. Inversion profiles and bandwidths of selective DANTE pulses acting on transverse magnetization, in the regime of moderate spinning frequencies, were characterized computationally and experimentally. A dramatic improvement in the resolution of the 2D spectrum was achieved when this decoupling protocol was employed.     

Sensitivity enhancement using paramagnetic relaxation in MAS solid-state NMR of perdeuterated proteins

Previously, Ishii et al., could show that chelated paramagnetic ions can be employed to significantly decrease the recycle delay of a MAS solid-state NMR experiment [N.P. Wickramasinghe, M. Kotecha, A. Samoson, J. Past, Y. Ishii, Sensitivity enhancement in C-13 solid-state NMR of protein microcrystals by use of paramagnetic metal ions for optimizing H-1 T-1 relaxation, J. Magn. Reson. 184 (2007) 350-356]. Application of the method is limited to very robust samples, for which sample stability is not compromised by RF induced heating. In addition, probe integrity might be perturbed in standard MAS PRE experiments due to the use of very short duty cycles. We show that these deleterious effects can be avoided if perdeuterated proteins are employed that have been re-crystallized from D(2)O:H(2)O=9:1 containing buffer solutions. The experiments are demonstrated using the SH3 domain of chicken alpha-spectrin as a model system. The labeling scheme allows to record proton detected (1)H, (15)N correlation spectra with very high resolution in the absence of heteronuclear dipolar decoupling. Cu-edta as a doping reagent yields a reduction of the recycle delay by up to a factor of 15. In particular, we find that the (1)H T(1) for the bulk H(N) magnetization is reduced from 4.4s to 0.3s if the Cu-edta concentration is increased from 0mM to 250 mM. Possible perturbations like chemical shift changes or line broadening due to the paramagnetic chelate complex are minimal. No degradation of our samples was observed in the course of the experiments.     

A solid-state 14N magic-angle spinning NMR study of some amino acids

Experimental strategies for the acquisition of high-quality 14N magic-angle spinning (MAS) NMR spectra of the simple amino acids, which exhibit 14N quadrupole coupling constants (C(Q)) on the order of 1.2 MHz, are devised. These are the first useful 14N MAS spectra reported for nitrogen compounds having a C(Q)(14N) value in excess of 1 MHz. The complete manifolds of spinning sidebands (ssbs), i.e., about 300 ssbs for a spinning frequency of 6.0 kHz, have been observed in the 14N MAS NMR spectra of a series of amino acids. In their crystal structure these amino acids all exhibit the zwitterionic form and thus the 14N MAS NMR spectra represent those of a rotating -NH(3)(+) group and not of an amino (-NH(2)) group. Computer simulations combined with fitting of simulated to the experimental ssb intensities result in the determination of precise values for the 14N quadrupole coupling (C(Q)) and its associated asymmetry parameter (eta(Q)) for the nitrogen sites in these molecules. For some of the amino acids the 14N MAS NMR spectra exhibit overlap between the manifolds of ssbs from two different nitrogen sites in accordance with their crystal structures. Computer analysis of these spectra results in two different sets of (C(Q), eta(Q)) values which mainly differ in the magnitudes for eta(Q).     

The dose response relationship of free radicals at high doses of gamma-irradiated amino acids and dipeptides

Free radical saturation at high doses has been confirmed for the γ-radiolysis of some amino acids and dipeptides. Spectral changes have been observed for the electron spin resonance signals from irradiated polycrystalline glycylglycine at high doses. The mechanisms proposed to explain the saturation phenomenon have been examined and found to be incomplete. A new model has been tentatively proposed to explain both the saturation and the spectral changes.     

Diffusion of paramagnetically labeled proteins in cartilage: enhancement of the 1-D NMR imaging technique

Quantifying the diffusive transport of large molecules in avascular cartilage tissue is important both for planning potential pharamacological treatments and for gaining insight into the molecular-scale structure of cartilage. In this work, the diffusion coefficients of gadolinium-DTPA and Gd-labeled versions of four proteins-lysozyme, trypsinogen, ovalbumin, and bovine serum albumin (BSA) with molecular weights of 14,300, 24,000, 45,000, and 67,000, respectively-have been measured in healthy and degraded calf cartilage. The experimental technique relies on the effect of the paramagnetic on the relaxation properties of the surrounding water, combined with the time course of a 1-dimensional spatial profile of the water signal in the cartilage sample. The enhanced technique presented here does not require a prior measurement of the relaxivity of the paramagnetic compound in the sample of interest. The data are expressed as the ratio of the diffusion coefficient of a compound in cartilage to its diffusion coefficient in water. For healthy cartilage, this ratio was 0.34 +/- 0.07 for Gd-DTPA, the smallest compound, and fell to 0.3 +/- 0.1 for Gd-lysozyme, 0.08 +/- 0.04 for Gd-trypsinogen, and 0.07 +/- 0.04 for Gd-ovalbumin. Gd-BSA did not appear to enter healthy cartilage tissue beyond a surface layer. After the cartilage had been degraded by 24-h trypsinization, these ratios were 0.60 +/- 0.03 for Gd-DTPA, 0.40 +/- 0.08 for Gd-lysozyme, 0.42 +/- 0.09 for Gd-trypsinogen, 0.16 +/- 0.14 for Gd-ovalbumin, and 0.11 +/- 0.05 for Gd-BSA. Thus, degradation of the cartilage led to increases in the diffusion coefficient of up to fivefold for the Gd-labeled proteins. These basic transport parameters yield insights on the nature of pore sizes and chemical-matrix interactions in the cartilage tissue and may prove diagnostically useful for identifying the degree and nature of damage to cartilage.     

Electronic characterization of lithographically patterned microcoils for high sensitivity NMR detection

Nuclear magnetic resonance (NMR) offers a non-destructive, powerful, structure-specific analytical method for the identification of chemical and biological systems. The use of radio frequency (RF) microcoils has been shown to increase the sensitivity in mass-limited samples. Recent advances in micro-receiver technology have further demonstrated a substantial increase in mass sensitivity [D.L. Olson, T.L. Peck, A.G. Webb, R.L. Magin, J.V. Sweedler, High-resolution microcoil H-1-NMR for mass-limited, nanoliter-volume samples, Science 270 (5244) (1995) 1967–1970]. Lithographic methods for producing solenoid microcoils possess a level of flexibility and reproducibility that exceeds previous production methods, such as hand winding microcoils. This paper presents electrical characterizations of RF microcoils produced by a unique laser lithography system that can pattern three dimensional surfaces and compares calculated and experimental results to those for wire wound RF microcoils. We show that existing optimization conditions for RF coil design still hold true for RF microcoils produced by lithography. Current lithographic microcoils show somewhat inferior performance to wire wound RF microcoils due to limitations in the existing electroplating technique. In principle, however, when the pitch of the RF microcoil is less than 100 μm lithographic coils should show comparable performance to wire wound coils. In the cases of larger pitch, wire cross sections can be significantly larger and resistances lower than microfabricated conductors.     

Solid state 19F NMR parameters of fluorine-labeled amino acids. Part I: aromatic substituents

Structural parameters of peptides and proteins in biomembranes can be directly measured by solid state NMR of selectively labeled amino acids. The 19F nucleus is a promising label to overcome the low sensitivity of 2H, 13C or 15N, and to serve as a background-free reporter group in biological compounds. To make the advantages of solid state 19F NMR fully available for structural studies of polypeptides, we have systematically measured the chemical shift anisotropies and relaxation properties of the most relevant aromatic and aliphatic 19F-labeled amino acids. In this first part of two consecutive contributions, six different 19F-substituents on representative aromatic side chains were characterized as polycrystalline powders by static and MAS experiments. The data are also compared with results on the same amino acids incorporated in synthetic peptides. The spectra show a wide variety of lineshapes, from which the principal values of the CSA tensors were extracted. In addition, temperature-dependent T(1) and T(2) relaxation times were determined by 19F NMR in the solid state, and isotropic chemical shifts and scalar couplings were obtained in solution.     

Solid state 19F NMR parameters of fluorine-labeled amino acids. Part II: aliphatic substituents

A representative set of amino acids with aliphatic 19F-labels has been characterized here, following up our previous compilation of NMR parameters for single 19F-substituents on aromatic side chains. Their isotropic chemical shifts, chemical shift tensor parameters, intra-molecular 19F dipole-dipole couplings and temperature-dependent T1 and T2 relaxation times were determined by solid state NMR on twelve polycrystalline amino acid samples, and the corresponding isotropic 19F chemical shifts and scalar couplings were obtained in solution. Of particular interest are amino acids carrying a trifluoromethyl-group, because not only the 19F chemical shift but also the intra-CF3 homonuclear dipolar coupling can be used for structural studies of 19F-labeled peptides and proteins. The CF3-groups are further compared with CH2F-, CD2F-, and CD3-groups, using both 19F and 2H NMR to describe their motional behavior and to examine the respective linebroadening effects of the protonated and deuterated neighbors. We have also characterized two unnatural amino acids in which a CF3-label is rigidly connected to the backbone by a phenyl or bicyclopentyl moiety, and which are particularly well suited for structure analysis of membrane-bound polypeptides. The 19F NMR parameters of the polycrystalline amino acids are compared with data from the correspondingly labeled side chains in synthetic peptides.     

Time resolved CIDNP study of electron transfer reactions in proteins and model compounds

Intramolecular electron transfer (IET) from tyrosine to tryptophan cation radicals is investigated using time resolved chemically induced dynamic nuclear polarization (CIDNP) spectroscopy in combination with laser flash photolysis. In both the tryptophan-tyrosine dipeptide and the denatured state of hen lysozyme in aqueous solution, the transformation TrpH⁺ → TyrO by IET leads to an increase in the tyrosine radical concentration, growth in the tyrosine CIDNP signal, fast decay of the tryptophan CIDNP, and inversion of the phase of the CIDNP of the photosensitizing dye, 2,2′-dipyridyl. IET effects are not observed for mixtures of the amino acid or for the native state of lysozyme. The steady state CIDNP effects seen for denatured lysozyme thus depend not only on the accessibility of the amino acid residues on the surface of the protein but also on the reactivity of the radical intermediates.