Structures,energetics and vibrational spectra of (H2O)32 clusters: a journey from model potentials to correlated theory

Empirical model potentials are found to be very useful for generating most competitive minima of large water clusters, whereas correlated (e.g. second order-Møller–Plesset perturbation (MP2) theory or higher) calculations are necessary for predicting their accurate energetics and vibrational features. The present study reports the structures and energetics of (H₂O)₃₂ clusters at MP2 level using aug-cc-pvDZ basis set, starting with low-lying structures generated from model potentials. Such high-end and accurate calculations are made feasible by the cost-effective fragment-based molecular tailoring approach (MTA) in conjunction with the grafting procedure. The latter is found to yield electronic energies with a sub-millihartree accuracy with reference to their full calculation counterparts. The vibrational spectra of nine low-lying (H₂O)₃₂ isomers are obtained from the corresponding MTA-based Hessian matrix. All these low-lying isomers show almost similar spectral features, which are in fair agreement with the experiment. The experimental spectrum of (H₂O)₃₂ is thus better understood from the vibrational features of this set of very closely spaced isomers. The present case study of (H₂O)₃₂ clearly demonstrates the efficacy in obtaining accurate structures, energetics and spectra at correlated level of theory by combining model potential-based structures with fragmentation methods.     

A comparison between ab initio calculated and measured Raman spectrum of triclinic albite (NaAlSi3O8)

Albite is one of the most common minerals in the Earth's crust, and its polymorphs can be found in rocks with different cooling histories. The characteristic spectrum of vibration of the albite mineral reflects its structural Si/Al ordering. In this study, we report on the comparison between the Raman spectra measured on a natural and fully ordered (as deduced on the basis of single‐crystal X‐ray diffraction data) ‘low albite’, NaAlSi₃O₈, and those calculated at the hybrid Hartree–Fock/density functional theory level by employing the WC1LYP Hamiltonian, which has proven to give excellent agreement between calculated and experimentally measured vibrational wavenumbers in silicate minerals. All the 39 expected A_g modes are identified in the Raman spectra, and their wavenumbers and intensities, in different scattering configurations, correspond well to the calculated ones. The average absolute discrepancy is ~3.4 cm⁻¹, being the maximum discrepancy |Δv|_max ~ 10.3 cm⁻¹. The very good quality of the WC1LYP results allows for reliable assignments of the Raman features to specific patterns of atomic vibrational motion. Copyright © 2015 John Wiley & Sons, Ltd.     

Raman and infrared spectra,conformational stability,ab initio calculations and vibrational assignment of dimethylsilylisocyanate

The Raman (3200‐30 cm⁻¹) and/or infrared spectra (3500 to 400 cm⁻¹) of gaseous, liquid and solid dimethylsilylisocyanate, (CH₃)₂ Si(H)NCO, have been recorded. The MP2(full) calculations, employing a variety of basis sets with and without diffusion functions, have been used to predict the structural parameters, conformational stability, vibrational fundamental wavenumbers, Raman activities, depolarization values and infrared intensities to support the vibrational assignment. The low wavenumber Raman spectrum of the gas with a significant number of Q‐branches for the SiNC(O) bend is consistent with an essentially linear SiNCO moiety. The ab initio calculations supported this conclusion as all possible orientations of the NCO moiety lead to nearly the same energy. This result is at variance with the conclusion from the electron diffraction study that the heavy atom skeleton was bent with an angle of 152(5)° with one stable cis conformer. It is believed that this reported angle difference from 180° is due to the shrinkage effect. The SiH distance of 1.486 Å has been obtained from the isolated SiH stretching wavenumber. From the adjustment of the ab initio MP2(full)/6‐311+G(d,p) predicted structural parameters, a proposed structure is reported, which is expected to give rotational constants within a few megahertz of the actual ones. These experimental and theoretical results are compared with the corresponding quantities of similar molecules. Copyright © 2009 John Wiley & Sons, Ltd.     

Se_7环两种构型的结构和红外振动光谱的理论研究

在从头算层次上采用自洽场Hartree -Fock(SCF -HF)与密度泛函理论 (DFT)的定域自旋密度泛函SVWN和杂化泛函B3LYP方法以及 6 - 31 G(d)基组 ,计算优化了Se7环chair和boat两种分子构型。以B3LYP/ 6 - 31 G(d)优化的结构为基础 ,计算了Se7环两种构型的红外振动光谱 ,标定了这两种构型的各个简谐振动模式的对称性。计算结果与前人的理论、实验数据进行了比较。     

FC(O)O自由基与NO反应机理的理论研究

用密度泛函理论(DFT)的B3LYP方法,在6-311G(d,p)基组水平上研究了FC(O)O自由基与NO反应的微观机理,全参数优化了反应过程中各反应物、中间体、过渡态和产物的几何构型,在CCSD(T)水平上计算了它们的能量,振动分析结果证实了中间体和过渡态的真实性,从对FC(O)O与NO的反应机理的研究结果看,FC(O)O与NO反应为4条反应通道多步反应过程,其反应的主要通道是FC(O)O+NO→M3→TS6→M5→FNO+CO₂,其主要产物是自由基FNO和CO_{2关键词： 密度泛函理论 反应机理 反应通道}     

FC(O)O2的结构及其自由基与NO反应的微观机理研究

用密度泛函理论(DFT)和哈特里-福克(HF)从头计算方法和半经验势方法等研究了FC(O)O₂ 的结构和振动性质.在DFT中采用B3LYP方法,在6-311G(d)基组上对FC(O)O₂自由基与NO反应的微观过程进行了分析.首先给出了各反应物、中间体、过渡态和生成物的几何构型,然后计算了它们的能量和频率,通过频谱分析得到反应的中间体和过渡态信息,即FC(O)O₂与NO反应为多反应通道,势垒高度和反应速度给出主要通道是FC(O)O₂     

New ring-like models and ab initio DFT study of the medium-range structures,energy and electronic properties of GeSe2 glass

Ab initio DFT calculations were performed on Ge_nSe_m nanoclusters (n?=?2, 3, 5, 6, 12; m?=?6–9, 14, 16, 30) that represent the local structure of GeSe₂ glass and on some ‘defect’ Ge_nSe_m clusters that are thought to be related to the inhomogeneity of the structure at the nanoscale. The optimal geometries, total energies and their derivatives as well as the electronic properties of Ge_nSe_m nanoclusters were calculated using traditional DFT method. In addition, the TD-DFT method has been applied to calculate the electronic band gaps of the clusters. The calculated physico-chemical properties of Ge_nSe_m nanoclusters and their couplings with the local-and medium-range order structure formations in GeSe₂ glass are analysed and discussed.     

Vibrational spectroscopic studies,conformations and ab initio calculations of 1,2‐bis(trifluorosilyl)ethane (SiF3CH2CH2SiF3)

Infrared spectra of 1,2‐bis(trifluorosilyl)ethane (SiF₃CH₂CH₂SiF₃) were obtained in the vapour and liquid phases, in argon matrices and in the solid phase. Raman spectra of the compound as a liquid were recorded at various temperatures between 293 and 270 K and spectra of an apparently crystalline solid were observed. The spectra revealed the existence of two conformers (anti and gauche) in the vapour, liquid and in the matrix. When the vapour was chock‐frozen on a cold finger at 78 K and annealed to 150 K, certain weak Raman bands vanished in the crystal. The vibrational spectra of the crystal demonstrated mutual exclusion between IR and Raman bands in accordance with C_2h symmetry. Intensity variations between 293 and 270 K of pairs of various Raman bands gave ΔH(gauche—anti) = 5.6 ± 0.5 kJ mol⁻¹ in the liquid, suggesting 85% anti and 15% gauche in equilibrium at room temperature. Annealing experiments indicate that the anti conformer also has a lower energy in the argon matrices, is the low‐energy conformer in the liquid and is also present in the crystal. The spectra of both conformers have been interpreted, and 34 anti and 17 gauche bands were tentatively identified. Ab initio and density functional theory (DFT) calculations were performed giving optimized geometries, infrared and Raman intensities and anharmonic vibrational frequencies for both conformers. The conformational energy difference derived in CBS‐QB3 and in G3 calculations was 5 kJ mol⁻¹. Copyright © 2009 John Wiley & Sons, Ltd.     

DFT studies on a high-energy density cage compound 1, 3, 5, 7, 9, 11-hexo(N(CH3)NO2)-2, 4, 6, 8, 10, 12-hexaazatetracyclo[5, 5, 0, 0, 0] dodecane

The infrared and Raman spectra, heat of formation (HOF) and thermodynamic properties were investigated by B3LYP/6-31G^** method for a new designed polynitro cage compound 1,3,5,7,9,11-hexo(N(CH₃)NO₂)-2,4,6,8,10,12-hexaazatetracyclo[5,5,0,0,0]dodecane. The detonation velocity (D) and pressure (P) were predicted by the Kamlet–Jacobs equations based on the theoretical density and condensed HOF. The bond dissociation energies and bond orders for the weakest bonds were analysed to investigate the thermal stability of the title compound. The computational result shows that the detonation velocity and pressure of the title compound are superior to those of hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX), but inferior to those of 1,3,5,7-tetranitro-1,3,5,7-tetraazacyclooctane (HMX) and hexanitrohexaazaisowurtzitane (HNIW). And the analysis of thermal stability shows that the first step of pyrolysis is the rupture of the N₇–NO₂ bond. The crystal structure obtained by molecular mechanics belongs to the P2₁ space group, with the lattice parameters Z = 2, a = 11.8246 Å, b = 10.4632 Å, c = 15.9713 Å, ρ = 1.98 g cm^?3.     

Structure,electronic properties and vibrational spectra of (MgF2)n clusters through a combination of genetic algorithm and DFT-based approach

In this article, we look at the option of using a stochastic optimisation technique, namely genetic algorithm (GA) in association with density functional theory (DFT) to find out the global minimum structures of (MgF₂)_n clusters with the range of n being between 2 and 10. To confirm whether the structures are indeed the acceptable ones, we go on to evaluate several properties like IR spectroscopic modes, vertical excitation energy, cluster formation energy, vertical ionisation potential and the HOMO–LUMO gap. We stress on the fact that an initial estimation of structure using GA, on two empirical potentials (with and without inclusion of polarisation), leads to a very quick convergence to structures which are quite close to the structures obtained from quantum chemical calculations done from the outset, such as using a DFT calculation. The general structural trend of these systems to form three-dimensional networks is also clear from our study. The lowest energy isomers of these clusters show preference for four-membered Mg₂F₂ and six-membered Mg₃F₃ rings. In the IR spectra of (MgF₂)_n clusters, a blueshift of the Mg–F symmetric stretch and a redshift of asymmetric Mg–F stretching as n increases are obtained.     

An ab initio study of filled skutterudites ROs4P12 (R = Sm,Eu and Gd)

The elastic, electronic, magnetic and optical properties of filled skutterudite ROs₄P₁₂ (R = Sm, Eu and Gd) have been studied by first principles calculation. The full-potential linearized augmented plane wave method based on density functional theory was employed. For the exchange-correlation potential, local spin density approximation + Coulomb repulsion (LSDA + U) is used to treat the f-electrons more effectively. The numerical values of the elastic parameters are estimated in the framework of the Voigt–Reuss–Hill approximation. OsP-based filled skutterudite with localized 4f and 5d-electrons shows dense energy bands near Fermi energy originating from rare earth and Os atoms. The dense density of states near E_F reveals that these compounds are suitable for thermoelectric application. Optical constants including dielectric function, optical reflectivity and refractive index are calculated for photon energy radiation up to 12 eV. The exchange-splitting of R-4f states were analyzed to explain the ferromagnetic behavior of ROs₄P₁₂.     

Ab initio Study of Electronic Structure and Magnetic Properties of Two Novel Neptunium （V） Sulfates： iaK3（ipO2）4（SO4）4（H2O）2 and iaipO2SO4H2O

Ab initio within the full potential linearized augmented plane wave （FP-LAPW） method with the GGA＋U approach is applied to study the electronic structures of two compounds NaK3（NpO2）4（SO4）4（H2O）2 and NaNpO2SO4H2O. The present calculations show that the major part of the spin magnetic moment in these two compounds is from Np（V） ions, and the origin of the cation-cation interactions between Np comes from the spin polarization effect within Np-ONv-Np bonds.     

Electronic,mechanical, phase transition,and thermo-physical properties of TMC (TM = V,Nb, and Ta): high pressure ab initio study

The structural, electronic, mechanical, phase transition, and thermo-physical properties of refractory carbides, viz. VC, NbC, and TaC have been computed in stable B1 and high pressure B2 phases by means of two different ab initio calculations using pseudo- and full-potential schemes. These materials have mixed covalent-, metallic-, and ionic-type bonding. The calculations of elastic constants show the mechanical stability of these materials in B1 phase only. The brittle nature and anisotropy is observed in these materials in B1 phase. Non-central forces are present in both the phases. Elastic wave velocities and Debye temperature have also been calculated. The present results on structural, phase transition, elastic, and other properties are in reasonably good agreement with the available experimental and theoretical data. The calculations in high pressure phase need experimental verification.     

A periodic DFT study on adsorption of small molecules(CH_4,CO,H_2O,H_2S,NH_3)on the WO_3(001) surface-supported Au

Gas molecules(such as CH4,CO,H2O,H2S,NH_3)adsorption on the pure and Au-doped WO3(001)surface have been studied by Density functional theory calculations with generalized gradient approximation.Based on the the calculation of adsorption energy,we found the most stable adsorption site for gas molecules by comparing the adsorption energies of different gas molecules on the WO3(001)surface.We have also compared the adsorption energy of five different gas molecules on the WO3(001)surface,our calculation results show that when the five kinds of gases are adsorbed on the pure WO3(001)surface,the order of the surface adsorption energy is CO>H2S>CH4>H2O>NH3.And the results show that NH3 is the most easily adsorbed gas among the other four gases adsorbed on the surface of pure WO3(001)surface.We also calculated the five different gases on the Au-doped WO3(001)surface.The order of adsorption energy was found to be different from the previous calculation:CO>CH4>H2S>H2O>NH3.These results provide a new route for the potential applications of Au-doped WO3 in gas molecules adsorption.     

Phase stability,mechanical and thermodynamic properties of orthorhombic and trigonal MgSiN2: an ab initio study

Structural stability and mechanical and thermodynamic properties of the orthorhombic and trigonal MgSiN₂ polymorphs (or-MgSiN₂ and tr-MgSiN₂) were investigated through density functional theory and quasi-harmonic Debye model (QHDM). Our calculations show that or-MgSiN₂ is energetically the stable polymorph at low pressure, in agreement with previous experimental and theoretical study. Under pressure, a crystallographic transition from the orthorhombic structure to the trigonal one occurs around 25, 17.45 and 19.05 GPa as obtained from the generalized gradient approximation of Perdew-Wang (GGA-PW91), the generalized gradient approximation parameterized recently by Perdew et al (GGA-PBEsol) and the local density approximation developed by Ceperley and Alder and parameterized by Perdew and Zunger (LDA-CAPZ), respectively. Single-crystalline and polycrystalline elastic constants and related properties, namely Vickers hardness, acoustic Grüneisen parameter, minimum thermal conductivity, isotropic sound velocities and Debye temperature, were numerically estimated for both or-MgSiN₂ and tr-MgSiN₂. We have showed that the hardness of tr-MgSiN₂ is comparable to that of the harder materials like c-BN and B₆O. Temperature and pressure dependencies of volume, bulk modulus, thermal expansion, Grüneisen parameter, heat capacities and Debye temperature were investigated using QHDM.     

(H2O)6的稳定结构及异构过程研究

(H₂O)₆是形成三维立体结构的最小水分子团簇并具有能量较低的多个稳定异构体.本文利用从头计算方法研究了各稳定结构的异构化过程.(H₂O)₆的环状结构与最稳定结构的能量差0.31 eV为一个氢键的键能.水分子团簇的异构化是分子间氢键打开或重组的过程,不同异构体之间的转化每次只涉及一个氢键的打开或重组,异构化的能垒高度在0.07—0.21 eV之间. 关键词： 水分子团簇 2O)₆')" href="#">(H₂O)₆ 异构化过程 从头计算     

Spectroscopy and dissociation of sulfuryl halides SO2X2 (X=F,Cl)

The spectroscopy and dissociation of the sulfuryl halides SO₂F₂ and SO₂Cl₂ have been studied in detail using ab initio methods. The possibility of various dissociation channels has been explored taking into account that the fragmented atoms and molecules can stay in their ground state only. An interesting pattern was observed in their dissociation energy spectra for the dissociation channels. The singlet potential energy surfaces for the exit channels of these molecules have been analysed. The release of halogen molecules after dissociation is discussed from an industrial point of view. Finally, the enthalpy of formation of these molecules was computed using the ab initio results. Our results agree very well with the experimental values available.     

FT‐IR and FT‐Raman spectra and ab initio calculations of 3‐{[(2‐hydroxyphenyl) methylene]amino}‐2‐phenylquinazolin‐4(3H)‐one

Fourier transform infrared (FT‐IR) and Fourier transform (FT) Raman spectra of 3‐{[(2‐hydroxyphenyl)methylene]amino}‐2‐phenylquinazolin‐4(3H)‐one were recorded and analyzed. The vibrational wavenumbers of the title compound were computed using HF/6‐31G* and 6‐311G* basis sets and compared with experimental data. The assignments of the normal modes are done by potential energy distribution (PED)calculations. The prepared compound was identified by nuclear magnetic resonance (NMR) and mass spectra. Optimized geometrical parameters of the title compound are in agreement with reported structures. Shortening of CN bond lengths reveal the effect of resonance. The simultaneous IR and Raman activations of the CO stretching mode shows a charge transfer interaction through a π‐conjugated path. The first hyperpolarizability, infrared intensities and Raman activities are reported. The phenyl C C stretching modes are equally active as strong bands in both IR and Raman spectra, which are responsible for hyperpolarizability enhancement leading to nonlinear optical activity. Copyright © 2009 John Wiley & Sons, Ltd.