The influence of halogen-bonding cooperativity on the hydrogen and lithium bonds: an ab initio study

ABSTRACT

Ab initio calculations are carried out to study linear NCH···(NCX)_1–5 and NCLi?…?(NCX)_1–5 clusters (X?=?F, Cl, Br). The aim is to study the influence of halogen-bonding cooperativity on the strength and bonding properties of hydrogen or lithium bond. Particular attention is given to parameters such as binding distances, interaction energies and cooperative energies in these systems. According to our results, the halogen-bonding cooperativity between the NCX molecules has an enhancing effect on the strength of hydrogen and lithium bonds, with an increase of 0.33–0.93 and 0.19–0.43?kcal/mol in NCH···(NCX)_n and NCLi···(NCX)_n, respectively. The enhancing effect of halogen bond on the hydrogen and lithium bond is dependent on the nature of halogen atom, and increases as X?=?F?相似文献   

Substituent effects in cooperativity of chalcogen bonds

In the present work, substituent effects on cooperativity of S···N chalcogen bonds are studied in XHS···NCHS···4-Z–Py (X = F, Cl; Z = H, F, OH, CH₃, NH₂, NO₂, and CN; and Py = pyridine) complexes using ab initio calculations. An increased attraction or a positive cooperativity is observed on introduction of a third molecule to the XHS···NCHS and NCHS···4-Z–Py binary systems. The shortening of each chalcogen bond distance in the ternary systems is dependent on the substituent Z and is increased in the order Z = NH₂ > OH > CH₃ > H > F > CN > NO₂. The electronic aspects of the complexes are analysed using molecular electrostatic potential, and the parameters derived from the atoms in molecules and natural bond orbital methodologies. According to interaction energy decomposition analysis, the electrostatic energies are important in the interaction energy of S···N bonds and may be regarded as being responsible for the stability of these complexes.     

An ab initio study on substituent and cooperative effects in bifurcated fluorine bonds

Bifurcated fluorine bond (BFB) interactions are studied in model binary complexes pairing N-formyl formamide derivatives and FX molecules (X = F, CN, NC, CF₃ and CCH) by means of ab initio calculations. The calculated F···O binding distances in these complexes are in the range of 2.813–3.048 Å. The corresponding interaction energies lie in a narrow range, from?2.25 to ?16.49 kJ/mol. The nature of BFBs is analysed by a vast number of methods including molecular electrostatic potential, quantum theory of atoms in molecules, non-covalent interaction index and natural bond orbital methods. According to the energy decomposition analysis, the electrostatic and dispersion effects have a dominant role in the formation of these complexes. The formation of a hydrogen- and lithium-bonding interaction tends to increase the strength of BFBs in the ternary XF:NFF-H:NH₃ and XF:NFF-Li:NH₃ complexes, respectively.     

Cooperativity effects between σ-hole interactions: a theoretical evidence for mutual influence between chalcogen bond and halogen bond interactions in F2S···NCX···NCY complexes (X = F,Cl, Br,I; Y = H,F, OH)

Quantum chemical calculations are performed to study the cooperativity effects between chalcogen bond and halogen bond interactions in F₂S···NCX···NCY complexes, where X = F, Cl, Br, I and Y = H, F, OH. These effects are investigated in terms of geometric and energetic features of the complexes, which are computed by second-order Møller–Plesset perturbation theory (MP2). For each F₂S···NCX···NCY complex studied, the effect of cooperativity on the chalcogen bond is dependent on the strength of halogen bond. The results indicate that the interaction energies of chalcogen and halogen bonds in the triads are more negative relative to the respective dyads. The interaction energy of chalcogen bond is increased by 31%–49%, whereas that of halogen bond by 28%–62%. The energy decomposition analysis reveals that electrostatic force plays a main role in the cooperativity effects between the chalcogen bond and halogen bond interactions. The topological analysis, based on the quantum theory of atoms in molecules, is used to characterise the interactions and analyse their enhancement with varying electron density at bond critical points.     

Cooperative effects between tetrel bond and other σ–hole bond interactions: a comparative investigation

Covalently bonded atoms of Groups IV–VII tend to have anisotropic charge distributions, the electronic densities being less on the extensions of the bonds (σ–holes) than in the intervening regions. These σ–holes often give rise to positive electrostatic potentials through which the atom can interact attractively and highly directionally with negative sites. In this work, cooperative effects between tetrel bond and halogen/chalcogen/pnicogen bond interactions are studied in multi-component YH₃M···NCX···NH₃ complexes, where Y = F, CN; M = C, Si and X = Cl, SH and PH₂. These effects are analysed in detail in terms of the structural, energetic, charge-transfer and electron density properties of the complexes. The nature of the σ–hole bonds is unveiled by quantum theory of atoms in molecules and natural bond orbital theory. A favourable cooperativity is found with values that range between ?0.34 and ?1.15 kcal/mol. Many-body decomposition of interaction energies indicate that two-body energy term is the most important source of the attraction, which its contribution accounts for 87%–96% of the total interaction energy.     

Halogen bond between hypervalent halogens YF3/YF5 (Y=Cl,Br, I) and H2X (X= O,S, Se)

ABSTRACT

The complexes of H₂X (X?=?O, S, Se) with hypervalent halogens YF₃ and YF₅ (Y?=?Cl, Br, I) have been studied. The σ-hole on the Y atom participates in a halogen bond with the lone pair on the chalcogen atom. In addition, some secondary interactions coexist with the halogen bond in most complexes. The interaction energy correlates with the nature of both X and Y atoms. In most cases, the complex is more stable for the heavier Y atom and the lighter X atom. Of course, there are some exceptions in H₂X···YF₃. YF₃ forms a more stable complex with H₂X than does YF₅. These complexes are dominated by electrostatic interaction and the halogen bond involving H₂S and H₂Se exhibits some covalent character.

Halogen bond plays an important role in chemical reactions and multivalent halogens can regulate chemical reactions by participating in a halogen bond. Thus we compare the effect of the chalcogen electron donor on the strength and nature of halogen bonding involving multivalent halogens.     

Prediction and characterisation of a chalcogen···π interaction with acetylene as a potential electron donor in XHS···HCCH and XHSe···HCCH (X = F,Cl, Br,CN, OH,OCH3, NH2, CH3) σ-hole complexes

It is well-known that many covalently bonded atoms of group VI have specific positive regions of electrostatic potential (σ-holes) through which they can interact with Lewis bases. This interaction is called ‘chalcogen bond’ by analogy with halogen bond and hydrogen bond. In this study, ab initio calculations are performed to predict and characterise chalcogen···π interactions in XHS···HCCH and XHSe···HCCH complexes, where X = F, Cl, Br, CN, OH, OCH₃, NH₂, CH₃. For the complexes studied here, XHS(Se) and HCCH are treated as a Lewis acid and a Lewis base, respectively. The CCSD(T)/aug-cc-pVTZ interaction energies of this type of σ-hole bonding range from ?1.18 to ?4.83 kcal/mol. The calculated interaction energies tend to increase in magnitude with increasing positive electrostatic potential on the extension of X–S(Se) bond. The stability of chalcogen···π complexes is attributed mainly to electrostatic and correlation effects. The nature of chalcogen···π interactions is unveiled by means of the atoms in molecules, natural bond orbital, and electron localisation function analyses.     

Electron density characteristics and charge transfer effect of hydrogen bond O–H···Pt(II): atoms in molecules study and natural bond orbital analysis

In this report, we extended the works of Rizzato et al. [Angew. Chem. Int. Ed. 49, 7440 (2010)] on the nature of O–H···Pt hydrogen bond in trans-[PtCl₂(NH₃)(N–glycine)]·H₂O(1·H₂O) complex, by computational study of O–H···Pt interaction in [NBu₄][Pt(C₆F₅)₃(8-hydroxyquinaldine)], with emphasis on charge transfer effect in this interaction of platinum(II) and hydrogen atom. According to the crystallographic geometry reported by José María Casas et al., [NBu₄][Pt(C₆F₅)₃(8-hydroxyquinaldine)] possesses one O–H···Pt hydrogen bridging interaction, similar to the case in trans-[PtCl₂(NH₃)(N–glycine)]·H₂O(1·H₂O) complex. On the basis of topological criteria of electron density, we characterised this O–H···Pt interaction. Charge transferred between platinum(II) and σ^*_O–H orbital in this complex was calculated by using NBO method. The stabilised energy associated to charge transfer was estimated using a direct proportionality, that is 2–3 eV per electron transferred. Charge transfer effects in O–H···Pt hydrogen bonds were studied for these two complexes. Our results indicate that the interaction of O–H···Pt is closed–shell in nature with significant charge transfer, and that charge transfer effect is not negligible in the interaction of O–H···Pt. The second conclusion is different from the result of Rizzato et al.     

Cooperativity of tetrel bonds tuned by substituent effects

Substituent effects on cooperativity between N···X and C···X interactions are studied in the 4-Z-Py···XH₃(NC)···XH₃(NC) complexes, where X = C, Si; Z = H, F, OH, CH₃, NH₂, F, NC, CN, NO₂ and Py = pyridine. All N···X and C···X binding distances in the ternary complexes are always shorter than those in the corresponding binary complex. This indicates that the formation of the N···X interaction strengthens C···X bond in these complexes and vice versa. Our results reveal that the strength of N···X and C···X interactions in the ternary complexes considerably depends on the nature of X and Z substituents. For a given aromatic system, the shortening of N···X and C···X distances is more important for SiH₃(NC) complexes than CH₃(NC) counterparts. The mechanism of cooperative effects in the ternary complexes is unveiled by electrostatic potential analyses and natural bond theory.     

Theoretical study on cooperative interplay between anion–π and chalcogen-bonding interactions

The mutual influence between anion–π and chalcogen bond interactions is studied by ab initio calculations at the MP2/6-311++G^** level of theory. These effects are analysed in detail in terms of the structural, energetic, charge-transfer and electron density properties of the complexes. Interesting cooperativity effects are found when anion–π and chalcogen-bonding interactions coexist in the same complex. The effect of anion–π on the properties of chalcogen bonding is larger than that of chalcogen bonding on the properties of anion–π. The cooperative mechanism is analysed in terms of the electrostatic potentials, orbital interaction and electron density analysis.     

Effect of substitution and cooperativity on the Cl–F blue shift in single-electron halogen-bonded H3C ··· ClF complex

The effect of substitution and cooperativity on the blue shift of Cl–F stretch vibration in H₃C ··· ClF complex has been studied with quantum chemical calculations at the UMP2(Full)/aug-cc-pVTZ level. The electron-withdrawing group (F atom) in the electron donor decreases the blue shift, whereas the electron-donating group (methyl group) in the electron donor cause it to increase. The cooperativity between two different types of halogen bonds in H₃C ··· ClF ··· ClF complex enhances the strength of single-electron halogen bond and the blue shift. The natural bond orbital (NBO) and atoms in molecules (AIM) analyses have been performed for the halogen-bonded complexes.     

Tuning of tetrel bonds interactions by substitution and cooperative effects in XH3Si···NCH···HM (X = H,F, Cl,Br; M = Li,Na, BeH and MgH) complexes

In this work, the interplay between the tetrel bond and the dihydrogen bond is investigated in ternary XH₃Si···NCH···HM complexes, where X = H, F, Cl, Br and M = Li, Na, BeH, MgH. The nature of Si···N and H···H interactions is studied by molecular electrostatic potential (MEP), noncovalent interaction and electron localisation function analyses. All binding distances in the ternary complexes are shorter than those of isolated XH₃Si···NCH and NCH···HM systems. That is, the two types of interactions have a cooperative effect on each other. The results of the MEP analysis indicate that the enhancement of the Si···N and H···H bonds can mainly be attributed to the electrostatic interaction. The plot of the reduced density gradient versus sign (λ₂)ρ indicates that the location of the spike associated with each interaction in the ternary systems moves slightly towards the negative (λ₂)ρ values with respect to the binary systems. This confirms that both Si···N and H···H interactions in the ternary complexes are strengthened by the presence of other. Besides, cooperative effects lead to a considerable change in the ¹⁴N nuclear quadrupole coupling constant values of the ternary complexes relative to the XH₃Si···NCH complexes.     

Mutual influence between triel bond and cation–π interactions: an ab initio study

Using ab initio calculations, the cooperative and solvent effects on cation–π and B···N interactions are studied in some model ternary complexes, where these interactions coexist. The nature of the interactions and the mechanism of cooperativity are investigated by means of quantum theory of atoms in molecules (QTAIM), noncovalent interaction (NCI) index and natural bond orbital analysis. The results indicate that all cation–π and B···N binding distances in the ternary complexes are shorter than those of corresponding binary systems. The QTAIM analysis reveals that ternary complexes have higher electron density at their bond critical points relative to the corresponding binary complexes. In addition, according to the QTAIM analysis, the formation of cation–π interaction increases covalency of B···N bonds. The NCI analysis indicates that the cooperative effects in the ternary complexes make a shift in the location of the spike associated with each interaction, which can be regarded as an evidence for the reinforcement of both cation–π and B···N interactions in these systems. Solvent effects on the cooperativity of cation–π and B···N interactions are also investigated.     

Dihydrogen bond in C2H4− n Cl n ··· NaH (n = 0, 1, 2, 3) complexes: ab initio,AIM and NBO studies

The dihydrogen-bonded complexes of ethylene and its chlorine derivatives with sodium hydride have been systematically investigated at the MP2/6-311++G(d,p) level. The studied complexes are divided into three groups (including Linear, Five- and Six-membered cyclic structures) based on the optimized structures. The structural, energetic and topological parameters are presented and analysed in terms of their possible correlation with the interaction energies and the intermolecular H?···?H distances. The nature of the electrostatic interaction in this type of dihydrogen bond has also been unveiled by means of atoms in molecules (AIM) and natural bond orbital (NBO) analysis. The effect of ring structure on the dihydrogen bonding systems has been considered by comparing with the corresponding linear structure. NBO analysis suggests that the electron density transfer (EDT) in cyclic structures have dual-channel character.     

The triel bond: a potential force for tuning anion–π interactions

Using ab-initio calculations, the mutual influence between anion–π and B···N or B···C triel bond interactions is investigated in some model complexes. The properties of these complexes are studied by molecular electrostatic potential, noncovalent interaction index, quantum theory of atoms in molecules (QTAIM) and natural bond orbital (NBO) analyses. According to the results, the formation of B···N or B···C triel bond interactions in the multi-component systems makes a significant shortening of anion–π distance. Such remarkable variation in the anion–π distances has not been reported previously. The strengthening of the anion–π bonding in the multi-component systems depend significantly on the nature of the anion, and it becomes larger in the order Br^? > Cl^? > F^?. The parameters derived from the QTAIM and NBO methodologies are used to study the mechanism of the cooperativity between the anion–π and triel bond interactions in the multi-component complexes.     

Strengthening of the halogen-bonding by an aerogen bond interaction: substitution and cooperative effects in O3Z···NCX···NCY (Z = Ar,Kr, Xe; X = Cl,Br, I; Y = H,F, OH) complexes

The geometry, interaction energy and bonding properties of ternary complexes O₃Z···NCX···NCY (Z= Ar, Kr, Xe; X = Cl, Br, I and Y = H, F, OH) are investigated with ab initio calculations at the MP2/aug-cc-pVTZ level. Two different types of intermolecular interactions are present in these complexes, namely, aerogen bond (Z···N) and halogen bond (X···N). The formation mechanism and bonding properties of these complexes are analysed with molecular electrostatic potentials, quantum theory of atoms in molecules and non-covalent interaction index. It is found that the cooperativity energies in the ternary complexes are all negative; that is, the interaction energy of the ternary complex is greater (more negative) than the sum of the interaction energies of the corresponding binary systems. Also, the cooperativity energies increase with the increase of the interaction energies. The cooperative effects in the ternary complexes make a decrease in the total spin–spin coupling constants across the aerogen bonding, J(Z–N), which can be regarded as a proof for the reinforce of Z···N interactions in the ternary complexes with respect to the binary systems.     

Theoretical study of the HXYH dimers (X,Y = O,S, Se). Hydrogen bonding and chalcogen–chalcogen interactions

A theoretical study of the HXYH (X, Y?=?O, S and Se) monomers and dimers has been carried out by means of MP2 computational methods. For the monomers, isomerization (H₂X=Y//HXYH) and rotational transition state barriers have been calculated. Additionally, the molecular electrostatic potential of the isolated monomers has also been analysed. Due to the chiral nature of these compounds, homo and heterochiral dimers have been explored. The number of minima found for the dimers range between 13 and 22. The electron density of the complexes has been characterized with the Atoms in Molecules (AIM) methodology finding a large variety of interactions. The DFT-SAPT method has been used to analyse the components of the interaction energies. Concerning chalcogen–chalcogen interactions, although the most stable minima are formed through hydrogen bonds (especially if OH groups are present in the molecules) as the size of the atoms involved in the interaction increase, the chalcogen–chalcogen contacts become more important.     

Symmetric bifurcated halogen bonds: substituent and cooperative effects

ABSTRACT

The aim of this study is to investigate the geometries, interaction energies and bonding properties of the symmetrical bifurcated halogen bond interactions (BXBs) by means of ab initio calculations. For this purpose, the NCX (X = Cl, Br) molecule is paired with a series of N-formyl formamide (NFF) derivatives (NFF-Z, Z = H, CN, CCH, OH, CH₃ and Li), and the properties of the resulting complexes are studied by molecular electrostatic potential, quantum theory of atoms in molecules, noncovalent interaction index and natural bond orbital analyses. For a fixed NCX molecule, interaction energies increase in the order of Z = Li > CH₃ > H > OH > CCH > CN. We found a strong correlation between the interaction energies of NCX:NFF-Z complexes and molecular electrostatic potential minimum values associated with NFF-Z monomers. Moreover, cooperative effects between BXB and X???N halogen bond interactions are studied in the ternary NCX:NCX:NFF-Z systems. Our results indicate that the strength of BXB interactions in the ternary complexes is enhanced by the presence of X???N bonds. Besides, cooperativity effects tend to increase the covalency of BXBs in these systems.     

An ab initio study on competition between pnicogen and chalcogen bond interactions in binary XHS:PH2X complexes (X = F,Cl, CCH,COH, CH3, OH,OCH3 and NH2)

Chalcogen and pnicogen bond interactions are studied in the binary XHS:PH₂X complexes (X = F, Cl, CCH, COH, CH₃, OH, OCH₃ and NH₂) using quantum chemical calculations. These interactions can be explained in terms of electrostatic effects, considering the chalcogen or pnicogen as a Lewis acid due to the presence of an σ-hole. Almost a perfect linear relationship is found between the interaction energies and the magnitudes of the product of most positive and negative electrostatic potentials. This reveals that both the negative and positive regions of the interacting atoms can be used to predict the strength of the eventual interaction. The nature of chalcogen and pnicogen bond interactions is unveiled by means of the atoms in molecules and electron localisation function analyses.     

Chalcogen bonds formed through π-holes: SO3 complexes with nitrogen and phosphorus bases

The possibility of formation of chalcogen bonds through π-holes is examined by means of ab initio calculations at MP2/aug-cc-pVTZ level. We investigate the complexes of SO₃ with a series of electron-donating nitrogen bases (ZN), including NH₃, H₂C═NH, NH₂F, NP, NCH, NCF, NF₃, and N₂, and their phosphorous analogues (ZP). The ZN:SO₃ complexes show shorter chalcogen bond distances than the ZP:SO₃ counterparts, accompanied with the more negative interaction energy in the former than in the latter. To understand the nature of interactions, molecular electrostatic potential analysis is performed. In addition, the quantum theory of atoms in molecules and electron localisation function are employed to analyse the chalcogen bond properties in these complexes.