Time‐Resolved Extended X‐ray Absorption Fine Structure (EXAFS) Studies by Means of an Energy Dispersive Spectrometer

The structures formed during the photodicosiation of CBr₄ in alcohol solution have been measured by means of a novel ultrafast time‐resolved x‐ray absorption fine structure (EXAFS) experimental system, suitable for the direct determination of ultrafast transient structures of molecules in the liquid and solid phase. The EXAFS spectra of the starting and final products of the reaction were measured and analyzed.     

Spatiotemporal Kinetics in Solution Studied by Time‐Resolved X‐Ray Liquidography (Solution Scattering)

Information about temporally varying molecular structure during chemical processes is crucial for understanding the mechanism and function of a chemical reaction. Using ultrashort optical pulses to trigger a reaction in solution and using time‐resolved X‐ray diffraction (scattering) to interrogate the structural changes in the molecules, time‐resolved X‐ray liquidography (TRXL) is a direct tool for probing structural dynamics for chemical reactions in solution. TRXL can provide direct structural information that is difficult to extract from ultrafast optical spectroscopy, such as the time dependence of bond lengths and angles of all molecular species including short‐lived intermediates over a wide range of times, from picoseconds to milliseconds. TRXL elegantly complements ultrafast optical spectroscopy because the diffraction signals are sensitive to all chemical species simultaneously and the diffraction signal from each chemical species can be quantitatively calculated from its three‐dimensional atomic coordinates and compared with experimental TRXL data. Since X‐rays scatter from all the atoms in the solution sample, solutes as well as the solvent, the analysis of TRXL data can provide the temporal behavior of the solvent as well as the structural progression of all the solute molecules in all the reaction pathways, thus providing a global picture of the reactions and accurate branching ratios between multiple reaction pathways. The arrangement of the solvent around the solute molecule can also be extracted. This review summarizes recent developments in TRXL, including technical innovations in synchrotron beamlines and theoretical analysis of TRXL data, as well as several examples from simple molecules to an organometallic complex, nanoparticles, and proteins in solution. Future potential applications of TRXL in femtosecond studies and biologically relevant molecules are also briefly mentioned.     

Microsecond X‐ray Absorption Spectroscopy Identification of CoI Intermediates in Cobaloxime‐Catalyzed Hydrogen Evolution

Rational development of efficient photocatalytic systems for hydrogen production requires understanding the catalytic mechanism and detailed information about the structure of intermediates in the catalytic cycle. We demonstrate how time‐resolved X‐ray absorption spectroscopy in the microsecond time range can be used to identify such intermediates and to determine their local geometric structure. This method was used to obtain the solution structure of the Co^I intermediate of cobaloxime, which is a non‐noble metal catalyst for solar hydrogen production from water. Distances between cobalt and the nearest ligands including two solvent molecules and displacement of the cobalt atom out of plane formed by the planar ligands have been determined. Combining in situ X‐ray absorption and UV/Vis data, we demonstrate how slight modification of the catalyst structure can lead to the formation of a catalytically inactive Co^I state under similar conditions. Possible deactivation mechanisms are discussed.     

Characterizing the Intermediates Compound I and II in the Cytochrome P450 Catalytic Cycle with Nonlinear X‐ray Spectroscopy: A Simulation Study

Cytochrome P450 enzymes are an important family of biocatalysts that oxidize chemically inert C?H bonds. There are many unresolved questions regarding the catalytic reaction intermediates, in particular P450 Compound I (Cpd‐I) and II (Cpd‐II). By using simple molecular models, we simulate various X‐ray spectroscopy signals, including X‐ray absorption near‐edge structure (XANES), resonant inelastic X‐ray scattering (RIXS), and stimulated X‐ray Raman spectroscopy (SXRS) of the low‐ and high‐spin states of Cpd‐I and II. Characteristic peak patterns are presented and connected to the corresponding electronic structures. These X‐ray spectroscopy techniques are complementary to more conventional infrared and optical spectroscopy and they help to elucidate the evolving electronic structures of transient species along the reaction path.     

Mechanism of the Deaquation of Aquopentaaminocobalt（Ⅲ）Bromide

There are two theories,SN1 and SN2, for the mechanism of the deaquation of aquopentaamincobalt(Ⅲ） bromide(AAC-B). Both of the theories are supported by some experimental and calculated data. But there are not any experiments to determine directly the structure of the intermediates at dififferent reaction time.In this paper the structures of the intermediates at different reaction time in deaquation-anation of AACB were determined by extended X-ray absorption fine structure (EXAFS) and the reaction process was studied by the combination of X-ray powder diffraction and EXAFS.It was demonstrated that the deaquation-anation of AACB obeys the SN2 theory.     

Osteopontin: A Uranium Phosphorylated Binding‐Site Characterization

Herein, we describe the structural investigation of one possible uranyl binding site inside a nonstructured protein. This approach couples spectroscopy, thermodynamics, and theoretical calculations (DFT) and studies the interaction of uranyl ions with a phosphopeptide, thus mimicking a possible osteopontin (OPN) hydroxyapatite growth‐inhibition site. Although thermodynamical aspects were investigated by using time‐resolved laser fluorescence spectroscopy (TRLFS) and isothermal titration calorimetry (ITC), structural characterization was performed by extended X‐ray absorption fine structure (EXAFS) at the U L_III‐edge combined with attenuated total reflection Fourier transform infrared (ATR‐FTIR) spectroscopy. From the vibrational and fluorescence spectra, several structural models of a UO₂²⁺/peptide complex were developed and subsequently refined by using theoretical calculations to fit the experimental EXAFS obtained. The structural effect of the pH value was also considered under acidic to moderately acidic conditions (pH 1.5–5.5). Most importantly, the uranyl/peptide coordination environment was similar to that of the native protein.     

Time‐Resolved Synchrotron Radiation Excited Optical Luminescence: Light‐Emission Properties of Silicon‐Based Nanostructures

The recent advances in the study of light emission from matter induced by synchrotron radiation: X‐ray excited optical luminescence (XEOL) in the energy domain and time‐resolved X‐ray excited optical luminescence (TRXEOL) are described. The development of these element (absorption edge) selective, synchrotron X‐ray photons in, optical photons out techniques with time gating coincide with advances in third‐generation, insertion device based, synchrotron light sources. Electron bunches circulating in a storage ring emit very bright, widely energy tunable, short light pulses (<100 ps), which are used as the excitation source for investigation of light‐emitting materials. Luminescence from silicon nanostructures (porous silicon, silicon nanowires, and Si–CdSe heterostructures) is used to illustrate the applicability of these techniques and their great potential in future applications.     

Probing the Primary Photochemical Processes of Octahedral Iron(V) Formation with Femtosecond Mid‐infrared Spectroscopy

Species containing iron at an oxidation state higher than +III are often termed “high‐valent iron” and are considered to be key catalytic intermediates in biochemistry. Here, we report the direct time‐domain probing of the photochemical formation of an octahedral nitrido iron(V) complex through dinitrogen cleavage from an diazido iron(III) precursor by using femtosecond mid‐infrared (MIR) spectroscopy. From the time‐resolved vibrational spectra, a mechanism is suggested for the photooxidation of the metal within 10 ps. This mechanism involves an initial ultrafast non‐adiabatic transition, followed by a quasithermal N?N bond rupture on the ground‐state surface.     

Local Structure of ZnO Micro Flowers and Nanoparticles Obtained by Micro‐Segmented Flow Synthesis

The micro‐segmented flow technique was applied for continuous synthesis of ZnO micro‐ and nanoparticles with short residence times of 9.4 s and 21.4 s, respectively. The obtained particles were characterized by scanning electron microscopy (SEM) and transmission electron microscopy (TEM). Small angle X‐ray scattering (SAXS) and photoluminescence spectroscopy were used to determine the size and optical properties of ZnO nanoparticles. In addition, extended X‐ray absorption fine structure (EXAFS) spectroscopy was employed to investigate local structural properties. The EXAFS measurements reveal a larger degree of structural disorder in the nanoparticles than the microparticles. These structural changes should be taken into consideration while evaluating the size‐dependent visible emission of ZnO nanoparticles.     

SPring‐8 BL36XU: Synchrotron Radiation X‐Ray‐Based Multi‐Analytical Beamline for Polymer Electrolyte Fuel Cells under Operating Conditions

We designed and constructed a beamline BL36XU at the 8 GeV synchrotron radiation facility SPring‐8 to provide information required for the development of next‐generation polymer electrolyte fuel cells (PEFCs) by clarifying the dynamic aspects of structures and electronic states of cathode catalysts under PEFC operating conditions and in the deterioration processes by accelerated durability test protcols. To investigate the mechanism and degradation process for the cathode electrocatalysis in practical PEFCs, we developed advanced time‐ and spatially‐resolved in‐situ/operando X‐ray absorption fine structure measurement systems and complementary analytical systems (X‐ray emission spectroscopy (XES), X‐ray diffraction (XRD), X‐ray computer tomography (CT) and hard X‐ray photoelectron spectroscopy (HAXPES)) and combined them to develop multi‐analytical systems at BL36XU. Multi‐analytical systems are very powerful for observing spatial‐temporal features of the transient processes occurring in complex systems such as PEFCs. This account describes the design, performance, and research results of the BL36XU and multi‐analytical in‐situ/operando systems.     

Characterization of aluminum–organic‐stabilized platinum–colloid networks with electron and photon spectroscopies

We have measured and interpreted the ultraviolet (HeI) and X‐ray photoelectron spectra and the metastable impact electron spectra (MIES) from aluminum–organic‐stabilized platinum–colloids and colloid networks, deposited on silicon substrates and characterized by X‐ray photoelectron spectroscopy, scanning Auger electron microscopy and transmission electron microscopy. MIES, in particular, gives information on the electronic structure of the spacer molecules interconnecting the colloids. In addition, changes in the electronic structure of the platinum clusters that are induced by different spacer molecules were identified by means of X‐ray absorption near‐edge structure measurements at the platinum L_III‐edge of these materials. This combination of techniques was also employed to follow the chemical changes that occur upon heating of the network in situ. It turns out that the thermal decomposition of the network is driven by the disintegration of the spacer molecules. Moreover, less sintering of the colloidal particles occurs in the networked systems than in unconnected particles. Most of the networked platinum–particles are still present in their original shape even after the destruction of spacer molecules. This observation could be linked to the encapsulation of these platinum particles into an (Al? O) protecting shell. Copyright © 2003 John Wiley & Sons, Ltd.     

Two‐ and Three‐Dimensional Molecular Organization of Schiff‐Base Derivatives

We have designed and synthesized a series of Schiff base derivatives, and studied their structural features in two‐dimensional (2D) and three‐dimensional (3D) states by combining scanning tunneling microscopy (STM) and X‐ray diffraction experiments. The Schiff‐base derivatives with short alkyl chains crystallize easily, which allows a detailed structural analysis by X‐ray diffraction. Due to the strong adsorbate–substrate interactions, those bases with long alkyl chains easily form 2D assemblies on highly oriented pyrolytic graphite (HOPG). The STM images indicate also that the introduction of two methoxy groups into the molecule can change the structure of these 2D assemblies as a result of the increased steric hindrances, for example: the Schiff‐base derivative, bearing both methoxy groups and C₁₆H₃₃ tails, forms 2D Moiré patterns, and an alignment of pairing Schiff‐base molecules may be easily resolved. Conversely, the Schiff base derivative, bearing solely C₁₆H₃₃ tails, forms 2D non‐Moiré patterns. It is demonstrated that the 3D structural features result from the compromise of intermolecular interactions of different molecular moieties. However, there is one more factor, which also governs the 2D structure: the adsorbate‐substrate interaction. The 3D crystal structure may thus help to understand many factors involved in the formation of 2D structures, and would be helpful for designing new molecular assemblies with tailoring functions.     

Characterization of high‐aspect‐ratio periodic structures by X‐ray photoelectron spectroscopy

X‐ray photoelectron spectroscopy (XPS) is a powerful surface characterization technique often relied on for quantification of surface species and coverages. Investigation of silicon microrods, considered a model for high‐aspect‐ratio structures, at different angles with respect to substrate normal was determined to have a significant impact on the relative sensitivity of surface‐bound species on rods relative to the base substrate. Comparison between planar silicon and microrod arrays demonstrates that the angular dependence is complicated and that careful studies must optimize conditions to differentiate between surfaces. In addition, the use of reverse angle resolved XPS, where the substrate is turned away from the X‐ray source, is shown to assist in simplifying the spectrum by removing underlying signal from the substrate near the base. Copyright © 2016 John Wiley & Sons, Ltd.     

Impact of Metal Ions in Porphyrin‐Based Applied Materials for Visible‐Light Photocatalysis: Key Information from Ultrafast Electronic Spectroscopy

Protoporphyrin IX‐zinc oxide (PP‐ZnO) nanohybrids have been synthesized for applications in photocatalytic devices. High‐resolution transmission electron microscopy (HRTEM), X‐ray diffraction (XRD), and steady‐state infrared, absorption, and emission spectroscopies have been used to analyze the structural details and optical properties of these nanohybrids. Time‐resolved fluorescence and transient absorption techniques have been applied to study the ultrafast dynamic events that are key to photocatalytic activities. The photocatalytic efficiency under visible‐light irradiation in the presence of naturally abundant iron(III) and copper(II) ions has been found to be significantly retarded in the former case, but enhanced in the latter case. More importantly, femtosecond (fs) transient absorption data have clearly demonstrated that the residence of photoexcited electrons from the sensitizer PP in the centrally located iron moiety hinders ground‐state bleach recovery of the sensitizer, affecting the overall photocatalytic rate of the nanohybrid. The presence of copper(II) ions, on the other hand, offers additional stability against photobleaching and eventually enhances the efficiency of photocatalysis. In addition, we have also explored the role of UV light in the efficiency of photocatalysis and have rationalized our observations from femtosecond‐ to picosecond‐resolved studies.     

Efficient Solid‐State Light‐Emitting CuCdS Nanocrystals Synthesized in Air

Semiconductor nanocrystals (NCs) possess high photoluminescence (PL) typically in the solution phase. In contrary, PL rapidly quenches in the solid state. Efficient solid state luminescence can be achieved by inducing a large Stokes shift. Here we report on a novel synthesis of compositionally controlled CuCdS NCs in air avoiding the usual complexity of using inert atmosphere. These NCs show long‐range color tunability over the entire visible range with a remarkable Stokes shift up to about 1.25 eV. Overcoating the NCs leads to a high solid‐state PL quantum yield (QY) of ca. 55 % measured by using an integrating sphere. Unique charge carrier recombination mechanisms have been recognized from the NCs, which are correlated to the internal NC structure probed by using extended X‐ray absorption fine structure (EXAFS) spectroscopy. EXAFS measurements show a Cu‐rich surface and Cd‐rich interior with 46 % Cu^I being randomly distributed within 84 % of the NC volume creating additional transition states for PL. Color‐tunable solid‐state luminescence remains stable in air enabling fabrication of light‐emitting diodes (LEDs).     

Reversal of a Single Base‐Pair Step Controls Guanine Photo‐Oxidation by an Intercalating Ruthenium(II) Dipyridophenazine Complex

Small changes in DNA sequence can often have major biological effects. Here the rates and yields of guanine photo‐oxidation by Λ‐[Ru(TAP)₂(dppz)]²⁺ have been compared in 5′‐{CCGG AT CCGG}₂ and 5′‐{CCGG TA CCGG}₂ using pico/nanosecond transient visible and time‐resolved IR (TRIR) spectroscopy. The inefficiency of electron transfer in the TA sequence is consistent with the 5′‐TA‐3′ versus 5′‐AT‐3′ binding preference predicted by X‐ray crystallography. The TRIR spectra also reveal the differences in binding sites in the two oligonucleotides.     

Effect of sol‐gel polymerization of tetraethylorthosilicate on internal aggregate structure in zinc‐neutralized ethylene‐methacrylic acid ionomers

Sol‐gel reactions of tetraethylorthosilicate have been performed in three different zinc‐neutralized ethylene‐methacrylic acid copolymer ionomers for the purpose of creating nanostructured organic‐inorganic materials with enhanced properties. Extended X‐ray absorption fine structure (EXAFS) spectroscopy was used to understand the effect of this in situ reaction on ionic aggregate morphology. EXAFS spectra showed that no large changes occurred in the aggregate structure, indicating that the internal environment of the aggregates did not nucleate the reaction, at least to the extent that the ionic domains were significantly undisrupted. However, small changes in EXAFS patterns were evident. These changes could be a result of nucleation of the reaction at the edges of the aggregates, or aggregate size rearrangement caused by the insertion of inorganic moieties into the polymer. However, the results indicate that the latter cannot include significant amounts of unaggregated zinc ions. © 2000 John Wiley & Sons, Inc. J Polym Sci B: Polym Phys 39: 197–200, 2001     

Crystal‐Field and Covalency Effects in Uranates: An X‐ray Spectroscopic Study

The electronic structure of U^V‐ and U^VI‐containing uranates NaUO₃ and Pb₃UO₆ was studied by using an advanced technique, namely X‐ray absorption spectroscopy (XAS) in high‐energy‐resolution fluorescence‐detection (HERFD) mode. Due to a significant reduction in core–hole lifetime broadening, the crystal‐field splittings of the 5f shell were probed directly in HERFD‐XAS spectra collected at the U 3d edge, which is not possible by using conventional XAS. In addition, the charge‐transfer satellites that result from U 5f–O 2p hybridization were clearly resolved. The crystal‐field parameters, 5f occupancy, and degree of covalency of the chemical bonding in these uranates were estimated by using the Anderson impurity model by calculating the U 3d HERFD‐XAS, conventional XAS, core‐to‐core (U 4f–3d transitions) resonant inelastic X‐ray scattering (RIXS), and U 4f X‐ray photoelectron spectra. The crystal field was found to be strong in these systems and the 5f occupancy was determined to be 1.32 and 0.84 electrons in the ground state for NaUO₃ and Pb₃UO₆, respectively, which indicates a significant covalent character for these compounds.     

Direct Observation of Unstable Reaction Intermediates by Acid‐Base Complex Formation

The structures of several unstable or metastable reaction intermediates that were photoproduced in crystals were analyzed by using X‐ray techniques. The presence of enough void space around the reactive group(s) is an essential factor for the reaction to occur with retention of the single‐crystal form. To expand the void space, an acid group (COOH) was substituted onto the reactant molecule and acid‐base complex crystals were prepared with several amines, such as dibenzylamine and dicyclohexylamine. Following the formation of such acid‐base complexes in crystals, the metastable structures of nitrenes and red species of photochromic salicylideneanilines have been successfully analyzed by using X‐ray techniques. Moreover, the structure of a Pt complex anion in the excited state has been analyzed, which formed acid‐base complex crystals with various alkylammonium cations. The formation of acid‐base complexes will be a powerful tool for directly observing the structure of unstable or metastable reaction intermediates by using X‐ray techniques.     

Non‐Bonded Interactions Drive the Sub‐Picosecond Bilin Photoisomerization in the Pfr State of Phytochrome Cph1

Phytochromes are protein‐based photoreceptors harboring a bilin‐based photoswitch in the active site. The timescale of photosignaling via C₁₅=C₁₆ E‐to‐Z photoisomerization has been ambiguous in the far‐red‐absorbing P_fr state. Here we present a unified view of the structural events in phytochrome Cph1 post excitation with femtosecond precision, obtained via stimulated Raman and polarization‐resolved transient IR spectroscopy. We demonstrate that photoproduct formation occurs within 700 fs, determined by a two‐step partitioning process initiated by a planarization on the electronic excited state with a 300 fs time scale. The ultrafast isomerization timescale for P_fr‐to‐P_r conversion highlights the active role of the nonbonding methyl–methyl clash initiating the reaction in the excited state. We envision that our results will motivate the synthesis of new artificial photoswitches with precisely tuned non‐bonded interactions for ultrafast response.