Concentric tube vacuum chamber for high magnetic field,high-pressure ionization in a fourier transform ion cyclotron resonance mass spectrometer

A new differential pumping design for external source Fourier transform ion cyclotron resonance mass spectrometry is described. A network of concentric tubes of increasing diameter terminates at a series of conductance limits across which a pressure from atmosphere to low-10^?8 torr is achieved. This design permits high-pressure sources to be positioned within the solenoidal superconducting magnet less than 20 cm from the analyzer trapped ion cell. Ionization at high magnetic field offers the advantage of radial ion confinement and consequently delivers enhanced ion current to the trapped ion cell. Ion injection utilizing this vacuum chamber design is simpler than previously reported serial pumping stage designs because elaborate focusing optics to overcome the magnetic mirror effect are unnecessary. Two probe-mounted atmospheric pressure sources are described as evidence of the general applicability of the concentric tube vacuum chamber. An electrospray source that delivers several hundred picoamperes of ion current to the cell yields high-sensitivity spectra of proteins beyond 100 kDa. Improved pumping compared with a prototype concentric tube network configuration now permits mass resolution in excess of 20,000 for the [M + 4H]⁴⁺ ion of melittin. The resolution is sufficient to distinguish isotope peaks within a single charge state. A probe-mounted, pulsed-laser ablation source that permits cluster formation in the strong magnetic field is also demonstrated.     

Trapping and detection of ions generated in a high magnetic field electrospray ionization fourier transform ion cyclotron resonance mass spectrometer

The trapping and detection parameters employed with a Fourier transform ion cyclotron resonance (FTICR) mass spectrometer that is interfaced to a high magnetic field electrospray ionization (ES11 source are presented. ES1 occurs at atmospheric pressure in a 1.5-T field, and FTICR detection occurs 25 cm away at 3.0 T in either one of two cells separated by a conductance limit and maintained at pressure differentials of 5 × 10⁵ and 2 × 10⁷ torr, respectively. The continuous electrospray ion current traversing the high- and low-pressure cells is 350 and 100 pA, respectively. Retarding grid studies at the high-pressure cell indicate electrospray ion kinetic energies are controllable from less than an electronvolt to more than 10 eV. These kinetic energies are a function of desolvating capillary-skimmer assembly distance and the skimmer potential. Efficient accumulation of injected ions is accomplished only when the trap-plate potential matches the ion kinetic energy. If this condition is satisfied, the trapped ion cell fills to the ion space charge limit within a few hundred milliseconds. It is concluded that even at the high pressures used, the primary trapping mechanism cannot be solely collision dependent because the rate of ion accumulation is independent of background pressure. However, optimized FTICR excitation conditions for peptides and proteins in the mass range from 10³ to more than 10⁶ kDa are found to vary strongly with pressure; this is attributed to large mass- and charge-dependent differences in ion-molecule collision frequency.     

Enhancement of the effective resolution of mass spectra of high-mass biomolecules by maximum entropy-based deconvolution to eliminate the isotopic natural abundance distribution

Although high-resolution Fourier transform ion cyclotron resonance mass spectrometry can resolve individual isotopic masses for biomolecules of more than 100 ku, its effective mass accuracy is limited by the distribution of naturally occurring rare isotopes (¹³C, ¹⁵N, ¹⁸O, ³⁴S, etc.). In this article, we compare least-squares and maximum entropy methods for deconvolution of the isotopic natural abundance distribution to narrow the mass spectral isotopic abundance envelope for greatly enhanced effective mass resolution. We apply both methods to yield deconvolved high-resolution deuterium distributions for peptides and proteins subjected to H/D exchange prior to electrospray Fourier transform ion cyclotron resonance mass analysis. In addition, we show that even unresolved isotopic envelopes from a quadrupole mass spectrometer can be narrowed for considerably improved resolution there as well.     

Primary to quaternary protein structure determination with electrospray ionization and magnetic sector mass spectrometry

Electrospray ionization with a forward-geometry magnetic sector mass spectrometer was used for collisionally activated dissociation studies of multiply charged polypeptides and for studying non-covalently bound protein systems. The high-resolution capabilities of a high-performance instrument allow the resolution of isotopic contributions for product ions and molecular ion species. Determination of product ion charge states by this method reduces difficulties in the interpretation of product ion mass spectra from multiply charged precursors, which are generated either in the atmospheric pressure/vacuum electrospray interface or in the collision chamber of the mass spectrometer. Extended tandem mass spectrometric experiments have the potential for sequencing larger polypeptides. However, evidence for isomerization of gas-phase product ions from substance P and substance P analogues was observed, complicating the interpretation of product ion spectra. Non-covalent complexes can also be studied by electrospray ionization magnetic sector MS. The higher m/z range of such an instrument is a major advantage for studying weakly bound systems, such as heme–protein systems (myoglobin, hemoglobin) and protein aggregates (concanavalin A), because of their tendency to form complex ions with relatively low charge states.     

Improved fourier-transform ion-cyclotron-resonance mass spectrometry of large biomolecules

Initial results from a Fourier-transform mass spectrometer with a 6.2 Tesla magnet using electrospray ionization show substantial improvements in resolution, mass accuracy, mass range, signal/noise, and tandem mass spectromehy capabilities compared to our earlier 2.8 T instrument that demonstrated the first unit resolution mass spectra of molecules as large as myoglobin (17 kDa). The new instrument exhibits greater than 10⁶ and 10⁵ resolving power for 8.6 and 29 kDa, respectively, proteins. Using an internal standard, the mass measuring error for myoglobin is less than 1 ppm. Nozzle-skimmer dissociation during electrospray of carbonic anhydrase (29 kDa) has yielded 38 fragment ions for which both mass and charge are identifiable; of these, 21 have been assigned to expected oligopeptide fragments.     

Charge reduction lowers mass resolving power for isotopically resolved electrospray ionization Fourier transform ion cyclotron resonance mass spectra

Electrospray ionization of synthetic or biological macromolecules above ∼1–2 kDa in mass typically produces ions of multiple charge states. Several recent papers have illustrated charge reduction as a means to simplify low-resolution electrospray ionization mass spectra, at the cost of significant loss in signal-to-noise ratio. However, if mass resolving power is sufficiently high (as in Fourier transform ion cyclotron resonance mass spectrometry) to resolve the heavy-atom isotopic distribution, then charge reduction actually lowers mass resolving power by a factor proportional to the ion charge. For proteins or nucleic acids of 10–50 kDa in mass, reducing the charge state to unity thus lowers mass resolving power by a factor of 10–50. In other words, as long as it is possible to resolve the isotopic distributions, charge reduction has no advantages for electrospray ionization mass spectrometry and has the very serious disadvantage of greatly degraded mass resolving power. Copyright © 2001 John Wiley & Sons, Ltd.     

Analysis of triacylglycerol hydroperoxides in human lipoproteins by Orbitrap mass spectrometer

Herein, we represent a simple method for the detection and characterization of molecular species of triacylglycerol monohydroperoxides (TGOOH) in biological samples by use of reversed-phase liquid chromatography with a LTQ Orbitrap XL mass spectrometer (LC/LTQ Orbitrap) via an electrospray ionization source. Data were acquired using high-resolution, high-mass accuracy in Fourier-transform mode. Platform performance, related to the identification of TGOOH in human lipoproteins and plasma, was estimated using extracted ion chromatograms with mass tolerance windows of 5 ppm. Native low-density lipoproteins (nLDL) and native high-density lipoproteins (nHDL) from a healthy donor were oxidized by CuSO₄ to generate oxidized LDL (oxLDL) and oxidized HDL (oxHDL). No TGOOH molecular species were detected in the nLDL and nHDL, whereas 11 species of TGOOH molecules were detected in the oxLDL and oxHDL. In positive-ion mode, TGOOH was found as [M + NH₄]⁺. In negative-ion mode, TGOOH was observed as [M + CH₃COO]^–. TGOOH was more easily ionized in positive-ion mode than in negative-ion mode. The LC/LTQ Orbitrap method was applied to human plasma and three molecular species of TGOOH were detected. The limit of detection is 0.1 pmol (S/N?=?10:1) for each synthesized TGOOH.

Fragmentation of phosphopeptides in an ion trap mass spectrometer

A systematic study of the fragmentation pattern of phosphopeptides in an electrospray (ESI) ion trap mass spectrometer is presented. We show that phosphotyrosine- and phosphothreonine-containing peptides show complicated fragmentation patterns. These phosphopeptides were observed to lose the phosphate moiety in the form of H₃PO₄ and/or HPO₃, but were also detected with no loss of the phosphate group. The tendency to lose the phosphate moiety depends strongly on the charge state. Thus, the highest observed charge state tends to retain the phosphate moiety with extensive fragmentation along the peptide backbone. We also show that phosphoserine-containing peptides have relatively simple fragmentation patterns of losing H₃PO₄. This loss is independent of the charge state. We suggest strategies for the accurate identification of phosphorylation sites using the ion trap mass spectrometer.     

A universal algorithm for fast and automated charge state deconvolution of electrospray mass-to-charge ratio spectra

This article describes a new algorithm for charge state determination and deconvolution of electrospray ionization (ESI) mass-to-charge ratio spectra. The algorithm (Zscore) is based on a charge scoring scheme that incorporates all above-threshold members of a family of charge states or isotopic components, and deconvolves both low- and high-resolution mass-to-charge ratio spectra, with or without a peak list (stick plot). A scoring weight factor, log (I/I ₀), in which I is the signal magnitude at a calculated mass-to-charge ratio, and I ₀ is the signal threshold near that mass-to-charge ratio, was used in most cases. For high-resolution mass-to-charge ratio spectra in which all isotopic peaks are resolved, the algorithm can deconvolve overlapped isotopic multiplets of the same or different charge state. Compared to other deconvolution techniques, the algorithm is robust, rapid, and fully automated (i. e., no user input during the deconvolution process). It eliminates artifact peaks without introducing peak distortions. Its performance is demonstrated for experimental ESI Fourier transform ion cyclotron resonance mass-to-charge ratio spectra (both low and high resolution). Charge state deconvolution to yield a “zero-charge” mass spectrum should prove particularly useful for interpreting spectra of complex mixtures, identifying contaminants, noncovalent adducts, fragments (N-terminal, C-terminal, internal), and chemical modifications of electrosprayed biomacromolecules.     

Analysis of solid uranium samples using a small mass spectrometer

A mass spectrometer for isotopic analysis of solid uranium samples has been constructed and evaluated. This system employs the fluorinating agent chlorine trifluoride (ClF₃) to convert solid uranium samples into their volatile uranium hexafluorides (UF₆). The majority of unwanted gaseous byproducts and remaining ClF₃ are removed from the sample vessel by condensing the UF₆ and then pumping away the unwanted gases. The UF₆ gas is then introduced into a quadrupole mass spectrometer and ionized by electron impact ionization. The doubly charged bare metal uranium ion (U²⁺) is used to determine the U²³⁵/U²³⁸ isotopic ratio. Precision and accuracy for several isotopic standards were found to be better than 12%, without further calibration of the system. The analysis can be completed in 25 min from sample loading, to UF₆ reaction, to mass spectral analysis. The method is amenable to uranium solid matrices, and other actinides.     

Effects of solvent and counterion on ion pairing and observed charge states of diquaternary ammonium salts in electrospray ionization mass spectrometry

Two diquaternary ammonium chloride salts have been used to examine the roles of solvent and counterion in determination of the degree of ion pairing in solution and the resultant charge state distributions in electrospray ionization mass spectrometry (ESI-MS). Three series of solvents, that is, alcohol, polar aprotic, and chlorinated solvents, have been employed to test the influence of solvent polarity and other parameters on the desorption behavior of diquaternary ammonium ions observed in ESI-MS. Solvents of higher polarity were found to yield gas-phase ions of higher charge states, in accordance with their reduced tendency toward ion pairing in solution. Counterion effects were investigated via the following approaches: (1) increase the diquaternary ammonium salt concentration; (2) increase the concentration of an external electrolyte that contained the common counterion Cl^?; (3) replace Cl^? with trifluoroacetate (TFA_c ^?); (4) increase the concentration of an external electrolyte that contained TFAc^?. These experiments indicate that variation of the specific counterion employed alters the degree of influence that the counterion exerts (via ion pairing) on electrospray ionization mass spectra. Increasing amounts of trifluoroacetate ions in a variety of solvent systems invariably led to a progressive shift of the observed ESI-MS charge states of diquaternary ammonium ions toward lower values.     

A high performance low magnetic field internal electrospray ionization-fourier transform ion cyclotron resonance mass spectrometer

A new in-magnetic field electrospray ionization (ESI) and Fourier transform ion cyclotron resonance mass spectrometer has been constructed and evaluated. This system is characterized by the use of multiple concentric cryopanels to achieve ultrahigh vacuum in the ion cyclotron resonance cell region, a probe-mounted internal ESI source, and a novel in-field shutter. Initial experiments demonstrate high resolution mass measurement capability at a field strength of 1 T. Mass resolution of 700,000 has been obtained for the 3+ charge state of Met-Lys-bradykinin (at m/z 440) generated by electrospray ionization. When electron impact ionization was employed, resolution in excess of 9,200,000 was achieved for nitrogen molecular ions (N ₂ ⁺ ). Isotopic resolution for molecular ions of bovine ubiquitin (MW=8565 µ) also was achieved by using small ion populations.     

Observation and implications of high mass-to-charge ratio ions from electrospray ionization mass spectrometry

High mass-to-charge ratio ions (> 4000) from electrospray ionization (ESI) have been observed for several proteins, including bovine cytochrome c (M _r 12,231) and porcine pepsin (M _r 34,584), by using a quadrupole mass spectrometer with an m/z 45,000 range. The ESI mass spectrum for cytochrome c in an aqueous solution gives a charge state distribution that ranges from 12 + to 2 +, with a broad, low-intensity peak in the mass-to-charge ratio region corresponding to the [M + H]⁺ ion. the negative ion ESI mass spectrum for pepsin in 1% acetic acid solution shows a charge state distribution ranging from 7? to 2?. To observe the [M - H]^? ion, harsher desolvation and interface conditions were required. Also observed was the abundant aggregation of the protens with average charge states substantially lower than observed for their monomeric counterparts. The negative ion ESI mass spectrum for cytochrome c in 1–100 mM NH₄OAc solutions showed greater relative abundances for the higher mass-to-charge ratio ions than in acuidic solutions, with an [M - H]^? ion relative abundance approximately 50% that of the most abundant charge state peak. The observation that protein aggregates are formed with charge states comparable to monomeric species (at fower mass-to-charge ratios) suggests that the high mass-to-charge ratio monomers may be formed by the dissociation of aggregate species. The observation of low charge state and aggregate molecular ions concurrently with highly charged species may serve to support a variation of the charged residue model, originally described by Dole and co-workers (Dole, M., et al. J. Chem. Phys. 1968, 49, 2240; Mack, L. L., et al. J. Chem. Phys. 1970, 52, 4977) which involves the Coulombically driven formation of either very highly solvated molecular ions or lower ananometer-diameter droplets.     

Gaseous myoglobin ions stored at greater than 300 K

Multiply-charged myoglobin ions retaining the prosthetic heme group have been formed by electrospray, injected into a quadrupole ion trap, and stored for up to one second prior to mass analysis. Collisional activation experiments indicate that these ions readily fragment into the charged heme group and the complementary apomyoglobin ion. No fragmentation is observed, however, upon ion storage in the presence of a neutral bath gas at 1 × 10^?3 torr for up to one second. The significance of this observation is that these non-covalently-bound ions, in which both the heme group and the polypeptide carry charge, are kinetically stable for over one second at room temperature and, perhaps, at higher temperatures. This suggests that other biologically relevant ions derived using electrospray and bound by non-covalent interactions can be studied using the various tools available with ion storage mass spectrometers and by other techniques that employ relatively high pressure environments for the study of gaseous ions.     

High pressure chemistry in a Fourier transform ion cyclotron resonance mass spectrometer using a split-pair magnet

A new experimental method has been developed to probe ion/molecule reactions at gas pressures up to 0. 1 torr. A Fourier transform ion cyclotron resonance (FTICR) mass spectrometer has been constructed to trap ions within the trapped ion cell at these pressures for time intervals up to several hundred milliseconds, allowing the ions to undergo several million collisions. Multiple pulsed valves inject the gaseous reagents in brief, high pressure bursts. A unique, high conductance vacuum chamber rapidly reduces the gas pressure from as high as 0.01 torr to near background pressures in 2–5 s for optimum operation of the FTICR for identifying the ionic products. A pressure of 0.1 torr is attainable but results in slower gas evacuation. High pressure operation of this instrument is demonstrated for ion chemistry in silane, argon, and silicon tetrafluoride. Pressures are sufficiently high to allow termolecular formation of adducts with the trapped ion cell. Negative ion formation in silane has greatly improved efficiency due to the high pressure ionization. Trace impurities at the ppm level in argon and silicon tetrafluoride are detected through chemical ionization afforded by the large number of ion/molecule collisions.     

Speciation of Zn‐aminopolycarboxylic complexes by electrospray ionization mass spectrometry and ion chromatography with inductively coupled plasma mass spectrometry

The speciation of Zn‐aminopolycarboxylic complexes was investigated using both electrospray ionization mass spectrometry (ESI‐MS) and ion chromatography (IC) with inductively coupled plasma mass spectrometry (ICP‐MS). The resulting ESI mass spectra indicated that [Zn(HEDTA)]^1?, [Zn(NTA)]^1?, [Zn(EDTA)]^2? and [Zn(DTPA)]^3? were all simultaneously detected in solution; [Zn(NTA)]^1? exhibited the weakest intensity of all these Zn‐aminopolycarboxylic complexes. IC/ICP‐MS was also successfully used to separate Zn complexes by anion‐exchange chromatography using a mobile phase containing 30 mM (NH₄)₂HPO₄ at pH 7.5 giving reasonable resolution within 15 min. A weak peak attributable to the poor stability [Zn(NTA)]^1? ion was also observed using IC/ICP‐MS. With the exception of [Zn(NTA)]^1?, detection limits ranging from 0.5 to 1.0 µg/L were obtained and the proposed method was used for the determination of Zn aminopolycarboxylic complexes in soil solution. Copyright © 2009 John Wiley & Sons, Ltd.     

Automated data reduction for hydrogen/deuterium exchange experiments,enabled by high-resolution fourier transform ion cyclotron resonance mass spectrometry

Mass analysis of proteolytic fragment peptides following hydrogen/deuterium exchange offers a general measure of solvent accessibility/hydrogen bonding (and thus conformation) of solution-phase proteins and their complexes. The primary problem in such mass analyses is reliable and rapid assignment of mass spectral peaks to the correct charge state and degree of deuteration of each fragment peptide, in the presence of substantial overlap between isotopic distributions of target peptides, autolysis products, and other interferant species. Here, we show that at sufficiently high mass resolving power (m/Δm_50% ≥ 100,000), it becomes possible to resolve enough of those overlaps so that automated data reduction becomes possible, based on the actual elemental composition of each peptide without the need to deconvolve isotopic distributions. We demonstrate automated, rapid, reliable assignment of peptide masses from H/D exchange experiments, based on electrospray ionization FT-ICR mass spectra from H/D exchange of solution-phase myoglobin. Combined with previously demonstrated automated data acquisition for such experiments, the present data reduction algorithm enhances automation (and thus expands generality and applicability) for high-resolution mass spectrometry-based analysis of H/D exchange of solution-phase proteins.     

Application of dicesium metaborate ion for the determination of boron by thermal ionisation mass spectrometry

Application of dicesium metaborate ion /Cs₂BO ₂ ⁺ / in Thermal Ionisation Mass Spectrometry /TIMS/ for the determination of boron present at sub ppm level in heavy water moderator as well as for the isotopic composition of boron in boron carbide is reported. Contamination of samples with natural boron while determining trace levels of boron in heavy water was checked by analysing SRM-952 isotopic reference material. The atom ratios of boron in B₄C were determined by directly fusing the material on the tantalum filament with Cs₂CO₃ as well as with Na₂CO₃ and also by following the conventional fusion procedures and the results were compared.     

Effect of ion-molecule collisions in the vacuum chamber of an electrospray time-of-flight mass spectrometer on mass spectra of proteins

Electrospray ionization spectra of positive multiply charged ions of several proteins with molecular weight from 8565 to 339,100 u were recorded at different pressures of residual gas in the vacuum chamber of an electrospray time-of-flight mass spectrometer. The pressure was varied in the range (0.2 to 5) × 10^?6 torr. The effect of pressure was found to be significant even for the lightest protein investigated (ubiquitin), which resulted in a decrease of both sensitivity and resolution. Investigations of the arrival-time distributions and the energy distributions of ions showed that collision-induced dissociation (CID) of the protein ions in the drift region is the main process responsible for the effect. Several CID cross sections of proteins were estimated from a series of mass spectra recorded at different pressures in the reflecting mode: 1150 Ų for cytochrome c (averaged over charge states z = 14–18), 800 Ų for lysozyme (z = 8–10), 1840 Ų for apomyoglobin (z = 12–25), 800 Ų for holomyoglobin (z = 8), and 2500 Ų for carbonic anhydrase II (z = 22–35). Several experiments with large proteins in their native conformations and low charge states (m/z 0,000) demonstrate that these ions are less sensitive to high residual gas pressure.