A new route for the synthesis of phosphate esters: 2,2′‐[benzene‐1,2‐diylbis(oxy)]bis(5,5‐dimethyl‐1,3,2‐dioxaphosphinane) 2,2′‐dioxide

Podand‐type ligands are an interesting class of acyclic ligands which can form host–guest complexes with many transition metals and can undergo conformational changes. Organic phosphates are components of many biological molecules. A new route for the synthesis of phosphate esters with a retained six‐membered ring has been used to prepare 2,2′‐[benzene‐1,2‐diylbis(oxy)]bis(5,5‐dimethyl‐1,3,2‐dioxaphosphinane) 2,2′‐dioxide, C₆H₄{O[cyclo‐P(O)OCH₂CMe₂CH₂O]}₂ or C₁₆H₂₄O₈P₂, (1), 2‐[(2′‐hydroxybiphenyl‐2‐yl)oxy]‐5,5‐dimethyl‐1,3,2‐dioxaphosphinane 2‐oxide, [cyclo‐P(O)OCH₂CMe₂CH₂O](2,2′‐OC₆H₄–C₆H₄OH), (2), and oxybis(5,5‐dimethyl‐1,3,2‐dioxaphosphinane) 2,2′‐dioxide, O[cyclo‐P(O)OCH₂CMe₂CH₂O]₂, (3). Compound (1) is novel, whereas the results for compounds (2) and (3) have been reported previously, but we record here our results for compound (3), which we find are more precise and accurate than those currently reported in the literature. In (1), two cyclo‐P(O)OCH₂CMe₂CH₂O groups are linked through a catechol group. The conformations about the two catechol O atoms are quite different, viz. one C—C—O—P torsion angle is −169.11 (11)° and indicates a trans arrangement, whereas the other C—C—O—P torsion angle is 92.48 (16)°, showing a gauche conformation. Both six‐membered POCCCO rings have good chair‐shape conformations. In both the trans and gauche conformations, the catechol O atoms are in the axial sites and the short P=O bonds are equatorially bound.     

Poly[[diaquabis(μ2‐1‐oxo‐2,6,7‐trioxa‐1‐phosphabicyclo[2.2.2]octane‐4‐carboxylato)copper(II)] dihydrate]

The asymmetric unit of the title complex, {[Cu(C₅H₆O₆P)₂(H₂O)₂]·2H₂O}_n, consists of half a Cu atom, one complete 1‐oxo‐2,6,7‐trioxa‐1‐phosphabicyclo[2.2.2]octane‐4‐carboxylate anion ligand and two non‐equivalent water molecules. The Cu atom lies on a crystallographic inversion centre and has an elongated axially distorted octahedral environment. A two‐dimensional layer structure parallel to (100) is formed as a result of the connectivity brought about by each anion bonding to two different Cu atoms via a carboxylate O atom and a bridging O atom of a C—O—P group. The water molecules participate in extensive O—H...O hydrogen bonding. Neighbouring layers are linked together by intermolecular hydrogen‐bonding interactions. The crystal structure is characterized by intra‐ and interlayer motifs of a hydrogen‐bonded network. This study demonstrates the usefulness of carboxylates with caged phosphate esters in crystal engineering.     

[(4,4‐Dimethyl‐2‐oxo‐1,3‐oxazolidin‐3‐yl)methyl]phosphonic acid

The title compound, C₆H₁₂NO₅P, was synthesized as an inter­mediate phase in a search for new N‐(phosphono­methyl)glycine derivatives. The mol­ecules are held together by O—H⋯O hydrogen bonds, forming chains along the b axis in the crystal structure. The observed mol­ecular structure is compared with that calculated by the density functional theory method.     

3‐(Triphenyl­phospho­ranyl­idene)pentane‐2,4‐dione and dieth­yl 2‐(triphenyl­phospho­ranyl­idene)malonate

The title ylides, 3‐(triphenyl­phospho­ranyl­idene)pentane‐2,4‐dione, C₂₃H₂₁O₂P, (I), and diethyl 2‐(triphenyl­phospho­ranyl­idene)malonate, C₂₅H₂₅O₄P, (II), differ in the conformations adopted by their extended ylide moieties. In (I), one carbonyl O atom is syn and the other is anti with respect to the P atom, the ylide group is nearly planar, with a maximum P—C—(C=O) angle of 18.2 (2)°, and the P—C, C—C and C=O bond lengths are consistent with electronic delocalization involving the O atoms. In (II), both carbonyl O atoms are anti and the ester groups are twisted out of the plane of the near trigonal ylide C atom, reducing delocalization, the largest P—C—(C=O) angle being 30.2 (2)°.     

A theoretical study on the conformation of 3‐phosphinoxido‐ and 3‐phosphono‐1,2,3,4,5,6‐hexahydrophosphinine 1‐oxides

The title compounds ( 2 and 4 ) obtained by the diastereoselective hydrogenation of the corresponding 1,2,3,6‐tetrahydrophosphinine oxides ( 1 and 3 ) were subjected to a detailed quantum chemical study. The possible chair conformers were calculated at the HF/6‐31G* level of theory, according to which, the 1‐phenyl‐3‐P(O)Y₂‐substituted products ( 2 ) exist in the trans₁ form, in which all substituents are equatorial. At the same time, the 1‐ethoxy‐3‐dialkylphosphono compounds ( 4 ) adopt the cis conformations, in which the 1‐ethoxy group is axial and the 3‐P(O)(OR)₂ moiety is equatorial. The major diastereomer ( 4–1 ) is cis₃, in which the 5‐methyl group is axial, while the minor one is cis₁ with an equatorial methyl substituent. It is noteworthy that the rotational position of the exocyclic P(O)Z₂ function affected the energy content of the chair conformer to a high extent. The possibility of the involvement of the twist conformers was also considered. © 2005 Wiley Periodicals, Inc. Heteroatom Chem 16:520–524, 2005; Published online in Wiley InterScience ( www.interscience.wiley.com ). DOI 10.1002/hc.20148     

N1‐(4‐tert‐Butyl­phenyl)‐N2‐hydroxy‐α‐oxo‐α‐phenyl­acet­amidine and N2‐hydroxy‐N1‐(4‐nitro­phenyl)‐α‐oxo‐α‐phenyl­acet­amidine hemihydrate

In the title compounds, C₁₈H₂₀N₂O₂, (I), and C₁₄H₁₁N₃O₄·0.5H₂O, (II), respectively, the oxime groups have an E configuration. In (I), the mol­ecules exist as polymers bound by intermolecular C—H⋯O and O—H⋯N hydrogen bonds around inversion centres. In (II), intermolecular OW—H⋯N, OW—H⋯O and O—H⋯OW interactions stabilize the molecular packing.     

Synthesis of Enantiomerically Pure 1,5,5‐Trideuterated cis‐ and trans‐2,4‐Dioxa‐3‐phosphadecalins. 31P‐NMR Evidence of Covalent‐Bond Formation and the Stereochemical Implications in the Course of the Inhibition of δ‐Chymotrypsin

The irreversible inhibition of δ‐chymotrypsin with the enantiomerically pure, P(3)‐axially and P(3)‐equatorially X‐substituted cis‐ and trans‐configurated 2,4‐dioxa‐3‐phospha(1,5,5‐²H₃)bicyclo[4.4.0]decane 3‐oxides (X=F, 2,4‐dinitrophenoxy) was monitored by ³¹P‐NMR spectroscopy. ¹H‐Correlated ³¹P{²H}‐NMR spectra enabled the direct observation of the vicinal coupling (³J) between the P‐atom of the inhibitor and the CH₂O moiety of Ser¹⁹⁵ (=‘Ser¹⁹⁵’(CH₂O)), thus establishing the covalent nature of the ‘Ser¹⁹⁵’(CH₂O? P) bond in the inhibited enzyme. The stereochemical course of the phosphorylation is dependent on the structure of the inhibitor, and neat inversion, both inversion and retention, as well as neat retention of the configuration at the P‐atom was found.     

Layered poly[μ2‐aqua‐μ3‐dimethyl­formamide‐di‐μ3‐phenyl­phosphon­ato‐dipotassium]

The first structurally characterized alkali metal phospho­nate, the title compound, [K₂(C₆H₆O₃P)₂(C₃H₇NO)(H₂O)]_n, has a complex structure, with layers parallel to the crystallographic bc plane consisting of two crystallographically independent K atoms sandwiched between the three types of ligands present in the structure, viz. water molecules, dimethyl­formamide molecules and two crystallographically independent phenyl­phospho­nate ligands. Six O atoms coordinate to one K atom and seven to the other. The interlayer distance is 15.327 (4) Å. The K—O distances are in the range 2.739 (2)–2.932 (2) Å for the seven‐coordinate K atom and 2.650 (2)–2.821 (2) Å for the six‐coordinate K atom.     

Di‐μ‐acetato‐O:O′‐di‐μ‐acetato‐O,O′:O′‐bis­{[(cyclo­penta­dienyl)tris­(di­methyl­phosphito‐P)­cobalt‐O,O′,O′′]neodymium(III)}

In the title compound, [{η⁵‐CpCo[P(O)(OMe)₂]₃}Nd(O₂CCH₃)₂]₂, with a centrosymmetric mol­ecule, each Nd atom has an eight‐coordination environment, surrounded by a tripodal {L_OMe = CpCo[P(O)(OMe)₂]₃} and four bridging acetato ligands. The coordination geometry around each Nd centre is described as a distorted square‐antiprism and the two different types of acetato ligands have μ‐O:O′‐ and μ‐O,O′:O′‐acetato coordination modes. The Nd—O distances are in the range 2.378 (4)–2.594 (5) Å and the Nd?Nd distance is 3.9913 (6) Å.     

trans‐Chloridobis[(Z)‐1‐imino‐1‐methoxyethane‐κN](triphenylphosphane‐κP)platinum(II) chloride monohydrate

The title compound, [PtCl(C₃H₇NO)₂(C₁₈H₁₅P)]Cl·H₂O or trans‐[PtCl{Z‐HN=C(Me)OMe}₂(PPh₃)]Cl·H₂O, crystallizes from an acetone solution of isomeric trans‐[PtCl{E‐HN=C(Me)OMe}₂(PPh₃)]Cl. The two HN=C(Me)OMe ligands show typical π‐bond delocalization over the N—C—O group [Cini, Caputo, Intini & Natile (1995). Inorg. Chem. 34 , 1130–1137] and have the unprecedented Z–anti configuration. The relative orientation of the imino ether ligands is head‐to‐tail.     

3,4‐Di­hydro‐6‐methyl‐3‐β‐d‐ribo­furan­osyl‐4,5′‐cyclo‐9H‐imidazo[1,2‐a]­purin‐9‐one hydrate

In the title compound, C₁₃H₁₃N₅O₄·H₂O (4,5′‐cyclo­wyosine·H₂O), the cyclization forces a syn arrangement of the aglycon with respect to the sugar moiety. The ribo­furan­ose part of the mol­ecule displays a β‐d configuration with an envelope C1′‐endo pucker. The mol­ecules are arranged in columns along the short a axis and are linked to water mol­ecules through O—H?O and O—H?N hydrogen bonds.     

4‐Ethynyl‐4‐hydroxycyclohexan‐1‐one and 4‐ethynyl‐4‐hydroxy‐2,3,5,6‐tetramethylcyclohexa‐2,5‐dien‐1‐one

The title compounds, C₈H₁₀O₂, (I), and C₁₂H₁₄O₂, (II), occurred as by‐products in the controlled synthesis of a series of bis­(gem‐alkynols), prepared as part of an extensive study of synthon formation in simple gem‐alkynol derivatives. The two 4‐(gem‐alkynol)‐1‐ones crystallize in space group P2₁/c, (I) with Z′ = 1 and (II) with Z′ = 2. Both structures are dominated by O—H?O=C hydrogen bonds, which form simple chains in the cyclo­hexane derivative, (I), and centrosymmetric dimers, of both symmetry‐independent mol­ecules, in the cyclo­hexa‐2,5‐diene, (II). These strong synthons are further stabilized by C[triple‐bond]C—H?O=C, C_methylene—H?O(H) and C_methyl—H?O(H) interactions. The direct intermolecular interactions between donors and acceptors in the gem‐alkynol group, which characterize the bis­(gem‐alkynol) analogues of (I) and (II), are not present in the ketone derivatives studied here.     

Poly[[diaqua­cadmium(II)]‐μ4‐[N‐(phosphonato­methyl)ammonio]acetato]

The title compound, [Cd(C₃H₆NO₅P)(H₂O)₂]_n, is a three‐dimensional polymeric complex. The asymmetric unit contains one Cd atom, one N‐(phosphono­methyl)glycine zwitterion [(O⁻)₂OPCH₂NH₂⁺CH₂COO⁻] and two water mol­ecules. The coordination geometry is a distorted CdO₆ octa­hedron. Each N‐(phosphono­methyl)glycine ligand bridges four adjacent water‐coordinated Cd cations through three phospho­nate O atoms and one carboxyl­ate O atom, like a regular PO₄³⁻ group in zeolite‐type frameworks. One‐dimensional zigzag (–O—P—C—N—C—C—O—Cd–)_n chains along the [101] direction are linked to one another via Cd—O—P bridges and form a three‐dimensional network motif with three types of channel systems. The variety of O—H⋯O and N—H⋯O hydrogen bonds is likely to be responsible for stabilizing the three‐dimensional network structure and preventing guest mol­ecules from entering into the channels.     

Similarities and differences in the structures of 5‐bromo‐6‐hydroxy‐7,8‐dimethylchroman‐2‐one and 6‐hydroxy‐7,8‐dimethyl‐5‐nitrochroman‐2‐one

The title compounds, C₁₁H₁₁BrO₃, (I), and C₁₁H₁₁NO₅, (II), respectively, are derivatives of 6‐hydroxy‐5,7,8‐trimethylchroman‐2‐one substituted at the 5‐position by a Br atom in (I) and by a nitro group in (II). The pyranone rings in both molecules adopt half‐chair conformations, and intramolecular O—H...Br [in (I)] and O—H...O_nitro [in (II)] hydrogen bonds affect the dispositions of the hydroxy groups. Classical intermolecular O—H...O hydrogen bonds are found in both molecules but play quite dissimilar roles in the crystal structures. In (I), O—H...O hydrogen bonds form zigzag C(9) chains of molecules along the a axis. Because of the tetragonal symmetry, similar chains also form along b. In (II), however, similar contacts involving an O atom of the nitro group form inversion dimers and generate R₂²(12) rings. These also result in a close intermolecular O...O contact of 2.686 (4) Å. For (I), four additional C—H...O hydrogen bonds combine with π–π stacking interactions between the benzene rings to build an extensive three‐dimensional network with molecules stacked along the c axis. The packing in (II) is much simpler and centres on the inversion dimers formed through O—H...O contacts. These dimers are stacked through additional C—H...O hydrogen bonds, and further weak C—H...O interactions generate a three‐dimensional network of dimer stacks.     

Ethyl 3‐(2′‐deoxyuridin‐5‐yl)‐3‐hydroxy‐2‐iodopropanoate,a ­nucleoside analogue

In the title compound, C₁₄H₁₉IN₂O₈, an almost planar heterocyclic base is oriented anti with respect to the puckered sugar moiety. The sugar pucker is C2′‐endo/C3′‐exo, the N‐glycosidic torsion angle is 166.4 (4)° and the conformation of O5′ is +sc. The mol­ecules are linked by hydrogen bonds of the types N—H?O and O—H?O.     

5,5‐Di­methoxy‐2‐phenoxy‐1,3,2‐dioxaphosphorinane 2‐oxide

In the title compound, C₁₁H₁₅O₆P, the six‐membered dioxa­phospho­rinane ring of the cyclic phosphate triester exists in a distorted chair conformation, with the phenoxy group in an axial position. The phenyl ring and both methoxy groups are in a trans–gauche orientation with respect to the 1,3,2‐di­oxa­phospho­rinane ring. In the phosphate group, a significant deformation from the ideal tetrahedral shape is observed. The crystal structure is stabilized by a three‐dimensional network of C—H⋯O interactions.     

7‐Vinyl‐8‐aza‐7‐de­aza‐2′‐deoxy­adenosine monohydrate

In the title compound, 4‐amino‐1‐(2‐deoxy‐β‐d ‐eythro‐pento­furan­osyl)‐3‐vinyl‐1H‐pyrazolo­[3,4‐d]­pyrimidine monohydrate, C₁₂H₁₅N₅O₃·H₂O, the conformation of the gly­cosyl bond is anti. The furan­ose moiety is in an S conformation with an unsymmetrical twist, and the conformation at the exocyclic C—C(OH) bond is +sc (gauche, gauche). The vinyl side chain is bent out of the heterocyclic ring plane by 147.5 (5)°. The three‐dimensional packing is stabilized by O—H·O, O—H·N and N—H·O hydrogen bonds.     

Ethyl 2‐form­amido‐2‐(4‐iodo­benzyl)‐3‐(4‐iodo­phenyl)­propionate and ethyl 2‐(3‐bromo­benzyl)‐3‐(3‐bromo­phenyl)‐2‐form­amidopropionate

The title compounds, C₁₉H₁₉I₂NO₃ and C₁₉H₁₉Br₂NO₃, are derivatives of α‐amino­isobutyric acid with halogen substituents at the para and meta positions, respectively. The ethoxycarbonyl and formamide side chains attached to the C_α atom of the mol­ecule adopt extended and folded conformations, respectively. The crystal structures are stabilized by N—H⃛O, C—H⃛O, C—Br⃛O and C—I⃛O interactions.     

Methyl 2‐O‐β‐d‐glucopyranosyl‐α‐l‐rhamnopyranoside

The overall conformation of the title compound, C₁₃H₂₄O₁₀, is described by the glycosidic torsion angles ?_H (H1_g—C1_g—O2_r—C2_r) and ψ_H (C1_g—O2_r—C2_r—H2_r), which have values of 13.6 and 16.1°, respectively. The former is significantly different from the value predicted by consideration of the exo‐anomeric effect (?_H～ 60°) and from that in solution (?_H～ 50°), as determined previously by NMR spectroscopy. An intramolecular O3_r—H?O2_g hydrogen bond may help to stabilize the conformation in the solid state. The orientation of the hydroxy­methyl group of the glucose residue is gauche–gauche, with a torsion angle ω (O5_g—C5_g—C6_g—O6_g) of ?70.4 (4)°. Both pyranose rings are in their expected chair conformations, i.e.⁴C₁ for d ‐glucose and ¹C₄ for l ‐rhamnose.     

Copper(II) bis(4,4,4‐trifluoro‐1‐phenylbutane‐1,3‐dionate) complexes with pyridin‐2‐one, 3‐hydroxypyridine and 3‐hydroxypyridin‐2‐one ligands: molecular structures and hydrogen‐bonded networks

Copper(II) bis(4,4,4‐trifluoro‐1‐phenylbutane‐1,3‐dionate) complexes with pyridin‐2‐one (pyon), 3‐hydroxypyridine (hpy) and 3‐hydroxypyridin‐2‐one (hpyon) were prepared and the solid‐state structures of (pyridin‐2‐one‐κO )bis(4,4,4‐trifluoro‐3‐oxo‐1‐phenylbutan‐1‐olato‐κ²O ,O ′)copper(II), [Cu(C₁₀H₆F₃O₂)₂(C₅H₅NO)] or [Cu(tfpb‐κ²O ,O ′)₂(pyon‐κO )], (I), bis(pyridin‐3‐ol‐κO )bis(4,4,4‐trifluoro‐3‐oxo‐1‐phenylbutan‐1‐olato‐κ²O ,O ′)copper(II), [Cu(C₁₀H₆F₃O₂)₂(C₅H₅NO)₂] or [Cu(tfpb‐κ²O ,O ′)₂(hpy‐κO )₂], (II), and bis(3‐hydroxypyridin‐2‐one‐κO )bis(4,4,4‐trifluoro‐3‐oxo‐1‐phenylbutan‐1‐olato‐κ²O ,O ′)copper(II), [Cu(C₁₀H₆F₃O₂)₂(C₅H₅NO₂)₂] or [Cu(tfpb‐κ²O ,O ′)₂(hpyon‐κO )₂], (III), were determined by single‐crystal X‐ray analysis. The coordination of the metal centre is square pyramidal and displays a rare example of a mutual cis arrangement of the β‐diketonate ligands in (I) and a trans‐octahedral arrangement in (II) and (III). Complex (II) presents the first crystallographic evidence of κO‐monodentate hpy ligation to the transition metal enabling the pyridine N atom to participate in a two‐dimensional hydrogen‐bonded network through O—H…N interactions, forming a graph‐set motif R ₂²(7) through a C—H…O interaction. Complex (III) presents the first crystallographic evidence of monodentate coordination of the neutral hpyon ligand to a metal centre and a two‐dimensional hydrogen‐bonded network is formed through N—H…O interactions facilitated by C—H…O interactions, forming the graph‐set motifs R ₂²(8) and R ₂²(7).