5‐Methyl‐2′‐deoxy‐4′‐thio‐α‐uridine (R)‐­S‐oxide

The pyrimidine ring of the title compound, C₁₀H₁₄N₂O₅S, is planar to within 0.024 (1) Å and makes an angle of 75.46 (10)° with the mean plane of the thio­sugar ring. In terms of standard nucleoside nomenclature, this ring has the C3′‐endo conformation. The O5′—C5′—C4′—C3′ torsion angle is 166.5 (3)° and the glycosidic torsion angle S4′—C1′—N1—C2 is ?52.1 (2)° (syn).     

5‐Ethyl‐2′‐deoxy‐4′‐thiouridine (R)‐S‐oxide monohydrate

The pyrimidine ring of the title compound, C₁₁H₁₆N₂O₅S·H₂O, is planar to within 0.026 (1) Å and makes an angle of 77.73 (8)° with the mean plane of the thiosugar ring. In terms of standard nucleoside nomenclature, this ring has a C1′‐exo,C2′‐endo conformation. The O5′—C5′—C4′—C3′ torsion angle is ?167.4 (2)° and the glycosidic S4′—C1′—N1—C2 torsion angle is ?101.8 (2)° (anti).     

Methyl 3‐(4‐methoxyphenyl)prop‐2‐enoate

The title mol­ecule, C₁₁H₁₂O₃, is almost planar, with an average deviation of the C and O atoms from the least‐squares plane of 0.146 (4) Å. The geometry about the C=C bond is trans. The phenyl ring and –COOCH₃ group are twisted with respect to the double bond by 9.3 (3) and 5.6 (5)°, respectively. The endocyclic angle at the junction of the propenoate group and the phenyl ring is decreased from 120° by 2.6 (2)°, whereas two neighbouring angles around the ring are increased by 2.3 (2) and 0.9 (2)°. This is probably associated with the charge‐transfer interaction of the phenyl ring and –COOCH₃ group through the C=C double bond. The mol­ecules are joined together through C—H?O hydrogen bonds between the methoxy and ester groups to form characteristic zigzag chains extended along the c axis.     

(E)‐6‐Methoxy‐3‐(α‐methoxybenzyl­idene)benzo[b]furan‐2(3H)‐one at 173 K

The title compound, C₁₇H₁₄O₄, is an unprecedented new synthetic isoaurone‐type enol ether that has the E configuration. The planar furanone ring is fused to a methoxy­benzene ring system, with an interplanar angle of 175.7 (1)°. Due to this ring fusion, the six‐membered ring has a significant amount of ring strain, as shown by the internal ring angle range of 115.8 (1)–124.7 (1)°, whereas the vinylic phenyl ring has internal angles between 119.7 (1) and 120.2 (1)°. The mol­ecules form infinite hydrogen‐bonding layers along the b direction of the form C—H?O, where the keto O atom acts as a bifurcated acceptor. These layers are connected along the c direction by another hydrogen bond with a methoxy H atom as donor. In addition to this connection, the layers are stacked via centres of symmetry by a pair of symmetry‐related benzo­furan­one ring systems.     

p‐Cresyl 2,3‐an­hydro‐5‐deoxy‐5‐phthal­imido‐1‐thio‐α‐d‐lyxo­furan­oside

The crystal structure of the title compound, C₂₀H₁₇NO₄S, (I), was determined in order to compare the solution and solid‐state conformations. The mol­ecule was synthesized as a building block for incorporation into oligosaccharides comprised of conformationally restricted furan­ose residues. The furan­ose ring adopts an envelope conformation with the ring O atom displaced above the plane (an ^OE conformation). The pseudorotational phase angle (P) is 88.6° and the puckering amplitude (τ_m) is 31.5°. The C₂—C₁—S—C(Ph) torsion angle is ?163.2 (2)°, which places the aglycone in the exo‐anomeric effect preferred position. The C1—S—C14 bond angle is 99.02 (13)° and the plane of the cresyl moiety is oriented nearly parallel to the four in‐plane atoms of the furan­ose ring envelope. The orientation about the C4—C5 bond is gauche–gauche [Bock & Duus (1994). J. Carbohydr. Chem. 13 , 513–543].     

Methyl (SR)‐10‐chloro‐1,2,3,4,5,6‐hexahydro‐6‐hydroxy‐8‐methoxy‐1‐methyl‐1,9‐phenanthroline‐6‐carboxylate

In the title compound, C₁₆H₁₉ClN₂O₄, the pyridine ring is nearly planar, the piperidine ring is non‐planar and the cyclo­hexane ring adopts a screw‐boat conformation. The carboxyl­ate group makes a dihedral angle of 80.9 (2)° with the least‐squares plane through the cyclo­hexane ring.     

Ethyl β‐{2‐[4‐(dimethylamino)phenyliminomethyl]‐1‐(phenylsulfonyl)indol‐3‐yl}acrylate

The title compound, C₂₈H₂₇N₃O₄S, crystallizes in the centrosymmetric space group P2₁/n, with one mol­ecule in the asymmetric unit. In the indole ring, the dihedral angle between the fused rings is 3.6 (1)°. The phenyl ring of the sulfonyl substituent makes a dihedral angle of 79.2 (1)° with the best plane of the indole moiety. The phenyl ring of the di­methyl­amino­phenyl group is orthogonal to the phenyl ring of the phenyl­sulfonyl group. The dihedral angle formed by the weighted least‐squares planes through the pyrrole ring and the phenyl ring of the di­methyl­amino­phenyl group is 7.8 (1)°. The molecular structure is stabilized by C—H?O and C—H?N interactions.     

2,2′‐Anhydro‐1‐(3′,5′‐di‐O‐acetyl‐β‐D‐arabinofuranosyl)uracil,a cyclouridine nucleoside with a C4′‐endo furanosyl conformation

2,2′‐Anhydro‐1‐(3′,5′‐di‐O‐acetyl‐β‐D‐arabinofuranosyl)uracil, C₁₃H₁₄N₂O₇, was obtained by refluxing 2′,3′‐O‐(methoxymethylene)uridine in acetic anhydride. The structure exhibits a nearly perfect C4′‐endo (⁴E) conformation. The best four‐atom plane of the five‐membered furanose ring is O—C—C—C, involving the C atoms of the fused five‐membered oxazolidine ring, and the torsion angle is only −0.4 (2)°. The oxazolidine ring is essentially coplanar with the six‐membered uracil ring [r.m.s. deviation = 0.012 (5) Å and dihedral angle = −3.2 (3)°]. The conformation at the exocyclic C—C bond is gauche–trans which is stabilized by various C—H...π and C—O...π interactions.     

5‐Phen­yl‐1,3,4‐thia­diazol‐2‐yl 2,3,4,6‐tetra­‐O‐acet­yl‐1‐thio‐β‐d‐glucopyran­oside

The structure of the title compound, C₂₂H₂₄N₂O₉S₂, is described. This compound consists of a sugar ring and a heterocyclic base linked unusually by an S atom. The sugar is in a ⁴C₁ chair conformation and forms dihedral angles of 49.54 (4) and 33.42 (5)° with the thia­diazole and phen­yl rings, respectively. The S atom occupies an equatorial position of the sugar ring and lies 1.807 (2) Å out of the corresponding mean plane.     

Ethyl 3‐amino‐6‐phenyl‐4‐tolylthieno[2,3‐b]pyridine‐2‐carboxylate

In the title compound, C₂₃H₂₀N₂O₂S, the central thieno­pyridine ring system is essentially planar, the dihedral angle between the planes of the two rings being 0.3 (2)°. The terminal ethyl carboxyl­ate group is twisted by 26.7 (3)° away from the central ring system. A short intramolecular hydrogen bond involving the amino N atom and the carbonyl O atom [N⋯O = 2.806 (4) Å] forms a pseudo‐six‐membered ring. Significant intermolecular C—H⋯N, C—H⋯O and C—H⋯π interactions contribute strongly to the stability of the structure, along with weak π–π‐stacking interactions.     

(Z)‐2‐(1‐Benzyl‐5‐nitro‐1H‐indol‐3‐ylmethyl­ene)‐1‐aza­bicyclo­[2.2.2]octan‐3‐one

In the title compound, C₂₃H₂₁N₃O₃, the indole ring is planar and the phenyl ring of the benzyl group makes a dihedral angle with the best plane of the indole ring of 73.77 (4)°. The double bond connecting the aza­bicyclic and indole moieties has Z geometry.     

3,4,6‐Tri‐O‐acetyl‐1,2‐O‐[1‐(exo‐ethoxy)ethylidene]‐β‐d‐mannopyranose 0.11‐hydrate

The title compound, C₁₆H₂₄O₁₀·0.11H₂O, is a key intermediate in the synthesis of 2‐deoxy‐2‐[¹⁸F]fluoro‐d ‐glucose (¹⁸F‐FDG), which is the most widely used molecular‐imaging probe for positron emission tomography (PET). The crystal structure has two independent molecules (A and B) in the asymmetric unit, with closely comparable geometries. The pyranose ring adopts a ⁴C₁ conformation [Cremer–Pople puckering parameters: Q = 0.553 (2) Å, θ = 16.2 (2)° and ϕ = 290.4 (8)° for molecule A, and Q = 0.529 (2) Å, θ =15.3 (3)° and ϕ = 268.2 (9)° for molecule B], and the dioxolane ring adopts an envelope conformation. The chiral centre in the dioxolane ring, introduced during the synthesis of the compound, has an R configuration, with the ethoxy group exo to the mannopyranose ring. The asymmetric unit also contains one water molecule with a refined site‐occupancy factor of 0.222 (8), which bridges between molecules A and B via O—H...O hydrogen bonds.     

Ethyl methyl 1,4‐dihydro‐4‐(3‐nitrophenyl)‐2,6‐bis(1‐piperidylmethyl)­pyridine‐3,5‐dicarboxylate

In the title compound, C₂₈H₃₈N₄O₆, the 4‐aryl substituent occupies a pseudo‐axial position approximately orthogonal to the plane of the di­hydro­pyridine ring [88.1 (3)°]. The di­hydro­pyridine ring adopts a flattened boat conformation. The H atom on the pyridine N atom is involved in a bifurcated intramolecular hydrogen bond, the acceptors being the N atoms of the two piperidyl­methyl groups [N?N 2.629 (4) and 2.695 (4) Å].     

4‐[1‐(Phenylsulfonyl)indol‐3‐yl]‐3a,4,5,9b‐tetrahydro‐3H‐cyclopenta[c]quinoline

In the title compound, C₂₆H₂₂N₂O₂S, the tetra­hydro­pyridine ring has a conformation intermediate between half‐chair and sofa. The tetrahydroquinoline mean plane makes a dihedral angle of 73.3 (1)° with the cyclopentene ring, which adopts an envelope conformation, and an angle of 45.45 (4)° with the indole best plane. The dihedral angle between the benzene and pyrrole rings is 2.6 (1)°. The orientations of the phenyl ring on the sulfonyl group and of the indole are governed by weak C—H?O interactions. The packing of the mol­ecule in the solid state is stabilized by C—H?O and C—H?N hydrogen bonds.     

1,2‐Bis[5‐(1,3‐dioxolan‐2‐yl)‐2‐ethyl‐3‐thien­yl]‐3,3,4,4,5,5‐hexa­fluoro­cyclo­pent‐1‐ene,a photochromic dithienylethene

The title compound, C₂₃H₂₂F₆O₄S₂, a photochromic dithienyl­ethene, is a promising material for optical storage and other optoelectrical devices. The mol­ecule adopts a photoactive antiparallel conformation in the crystalline state. The distance between the two reactive C atoms which are involved in potential ring closure is 3.829 (4) Å. The dihedral angles between the central cyclo­pentene ring and the adjacent thio­phene rings are 55.38 (7) and 54.81 (9)°. The colourless crystals turn magenta when exposed to UV radiation and the process is reversible.     

5‐Amino‐4‐(4‐diethylaminophenyl)‐2‐phenyl‐7‐(pyrrolidin‐1‐yl)‐1,6‐naph­thyridine‐8‐carbonitrile

In the title compound, C₂₉H₃₀N₆, the naphthyridine ring is almost planar with a dihedral angle of 5.4 (1)° between the pyridyl rings. The dihedral angles between the naphthyridine system and the diethyl­amino­phenyl, phenyl and pyrrolidine rings are 53.1 (1), 19.8 (1) and 20.9 (1)°, respectively. The pyrrolidine ring adopts a half‐chair conformation. The mol­ecule is stabilized by weak C—H?N interactions.     

Disorder and conformational analysis of methyl β‐d‐galactopyranosyl‐(1→4)‐β‐d‐xylopyranoside

Methyl β‐d ‐galactopyranosyl‐(1→4)‐β‐d ‐xylopyranoside, C₁₂H₂₂O₁₀, (II), crystallizes as colorless needles from water with positional disorder in the xylopyranosyl (Xyl) ring and no water molecules in the unit cell. The internal glycosidic linkage conformation in (II) is characterized by a ϕ′ torsion angle (C2′_Gal—C1′_Gal—O1′_Gal—C4_Xyl) of 156.4 (5)° and a ψ′ torsion angle (C1′_Gal—O1′_Gal—C4_Xyl—C3_Xyl) of 94.0 (11)°, where the ring atom numbering conforms to the convention in which C1 denotes the anomeric C atom, and C5 and C6 denote the hydroxymethyl (–CH₂OH) C atoms in the β‐Xyl and β‐Gal residues, respectively. By comparison, the internal linkage conformation in the crystal structure of the structurally related disaccharide, methyl β‐lactoside [methyl β‐d ‐galactopyranosyl‐(1→4)‐β‐d ‐glucopyranoside], (III) [Stenutz, Shang & Serianni (1999). Acta Cryst. C 55 , 1719–1721], is characterized by ϕ′ = 153.8 (2)° and ψ′ = 78.4 (2)°. A comparison of β‐(1→4)‐linked disaccharides shows considerable variability in both ϕ′ and ψ′, with the range in the latter (∼38°) greater than that in the former (∼28°). Inter‐residue hydrogen bonding is observed between atoms O3_Xyl and O5′_Gal in the crystal structure of (II), analogous to the inter‐residue hydrogen bond detected between atoms O3_Glc and O5′_Gal in (III). The exocyclic hydroxymethyl conformations in the Gal residues of (II) and (III) are identical (gauche–trans conformer).     

3‐(2‐Furyl)‐6‐(4‐methyl­phenyl)‐7H‐1,2,4‐triazolo­[3,4‐b][1,3,4]thia­diazine and its 6‐phenyl analogue

In the title compounds, C₁₅H₁₂N₄OS, (I), and C₁₄H₁₀N₄OS, (II), the thia­diazine ring adopts a skew‐boat conformation, while the triazole and furyl rings are essentially planar. The phenyl group is twisted by 33.5 (2) and 47.9 (1)° out of the triazole‐ring plane in (I) and (II), respectively.     

5‐Amino‐4‐(4‐diethyl­amino­phenyl)‐2‐(4‐hydroxy­phenyl)‐7‐(pyrrolidin‐1‐yl)‐1,6‐naphthyridine‐8‐carbo­nitrile

In the title compound, C₂₉H₃₀N₆O, the naphthyridine moiety is planar with a dihedral angle between the fused rings of 1.9 (1)°. The phenol ring is nearly coplanar, while the diethyl­amino­phenyl substituent is orthogonal to the central naphthyridine ring and the pyrrolidine ring makes an angle of 11.2 (1)° with it. The O atom of the hydroxy substituent is coplanar with the phenyl ring to which it is attached. The molecular structure is stabilized by a C—H?N‐type intramolecular hydrogen bond and the packing is stabilized by intermolecular C—H?π, O—H?N and N—H?O hydrogen bonds.