Theoretical characterization of the "very rapid" Mo(V) species generated in the oxidation of xanthine oxidase

Density functional theory calculations of the "very rapid" Mo(V) intermediate of xanthine oxidase (XO) result in a square pyramidal geometry with end-on coordination of the model substrate. The Mo-C8 distance is 3.18 A, longer than previously reported from ENDOR experiments (<2.4 A Howes; et al. Biochemistry 1996, 35, 1432; 2.7-2.9 A Mandikandan; et al. J. Am. Chem. Soc. 2001, 123, 2658). Theoretical gas-phase isotropic hyperfine coupling constants A(iso)(C8) (B3LYP/BSII, 7.68 MHz; B3P86/BSII, 8.64 MHz) compare well with experimental values for the "very rapid" Mo(V) intermediate of XO with xanthine (8.8 MHz, Howes et al.) and 2-hydroxy-6-methylpurine (7.9 MHz, Mandikandan et al.). Absolute values of A(iso) of the metal-bound substrate oxygen are similar in magnitude to that of experiment.     

Synthesis and modeling study of (2S,5R,6R)- and (2S,5R,6S)-6-hydroxy- 8-(1-decynyl)-benzolactam-V8 as protein kinase C modulators

[structures: see text] Both (2S,5R,6R)- and (2S,5R,6S)-6-hydroxy-8-(1-decynyl)benzolactam-V8 were designed and synthesized as PKC modulators. Biological assays reveal the (6R)-ligand to be 20-fold more potent than its (6S)-counterpart in binding to PKC alpha.     

Syntheses and structures of two chiral zincophosphite compounds: [Zn(C8H8N2)(HPO3)] and (C6H13N2)[Zn3(C6H12N2)(HPO3)3(H2PO3)

Employing achiral organic amines (2-methylbenzimidazole and 1,4-diazabicyclo[2.2.2]octane) as the structure-directing agent and ligand, two chiral zincophosphites, [Zn(C(8)H(8)N(2))(HPO(3))] 1 and (C(6)H(13)N(2))[Zn(3)(C(6)H(12)N(2))(HPO(3))(3)(H(2)PO(3))] 2, have been hydro(solvo)-thermally synthesized, crystallizing in the chiral space group P2(1)2(1)2(1). Single-crystal structural analysis reveals that compound 1 consists of alternating ZnO(3)N and HPO(3) units exhibiting a neutral one-dimensional chiral chain. Interestingly, the organic ligands interact with the inorganic chain via hydrogen-bonds in hydrogen-bonded helix fashion. Compound 2, a three-dimensional chiral open framework with 16-MR channels, is formed by the distorted {Zn(3)P(4)} secondary building unit (SBU). The organic amine molecules play dual roles as both ligands and countercations.     

Organically templated metal germanate: ionothermal synthesis of (C8H24N4)[NbOGe6O13(OH)2F

A very rare organically templated niobium germanate was synthesized and structurally characterized by single-crystal X-ray diffraction. The crystal shows an intense second harmonic generation signal. It is the first example of the synthesis of organically templated metal germanate using an ionic liquid as a solvent.     

Three-dimensional Octameric Assembly of Icosahedral M13 Units in [Au8Ag57(Dppp)4(C6H11S)32Cl2]Cl and its [Au8Ag55(Dppp)4(C6H11S)34][BPh4]2 Derivative

The high-dimensional (that is, three-dimensional (3D)) assembly of nanomaterials is an effective means of improving their properties; however, achieving this assembly at the atomic level remains challenging. Herein, we obtained a novel nanocluster, [Au₈Ag₅₇(Dppp)₄(C₆H₁₁S)₃₂C_l2]Cl (Dppp=1,3-bis(diphenylphosphino)propane) showing a 3D octameric assembly mode involving the kernel penetration of eight complete icosahedral Au@Ag₁₀Au₂ units for the first time. The atomically precise structure was determined by single-crystal X-ray diffraction, and further confirmed by thermogravimetric analysis, X-ray photoelectron spectroscopy, and electrospray ionization mass spectrometry measurements. Furthermore, ligand-induced transformation prompted the conversion of [Au₈Ag₅₇(Dppp)₄(C₆H₁₁S)₃₂Cl₂]Cl, with complete octameric fusion into [Au₈Ag₅₅(Dppp)₄(C₆H₁₁S)₃₄][BPh₄]₂, with incomplete octameric fusion. These observations will hopefully facilitate further research on the assembly of M₁₃ nanobuilding blocks.     

New Thioantimonates(III) with Different Sb:S Ratios: Solvothermal Syntheses and Crystal Structures of [(C3H10NO)(C3H10N)][Sb8S13], [(C2H8NO)(C2H8N)(CH5N)][Sb8S13], [(C6H16N2)(C6H14N2)][Sb6S10], and [C8H22N2][Sb4S7]

Four new thioantimonates(III) with compositions [(C₃H₁₀NO)(C₃H₁₀N)][Sb₈S₁₃] ( 1 ) (C₃H₉NO = 1‐amino‐3‐propanol, C₃H₉N = propylamine), [(C₂H₈NO)(C₂H₈N)(CH₅N)][Sb₈S₁₃] ( 2 ) (C₂H₇NO = ethanolamine, C₂H₇N = ethylamine, CH₅N = methylamine), [(C₆H₁₆N₂)(C₆H₁₄N₂)][Sb₆S₁₀] ( 3 ) (C₆H₁₄N₂ = 1,2‐diaminocyclohexane) and [C₈H₂₂N₂][Sb₄S₇] ( 4 ) (C₈H₂₀N₂ = 1,8‐diaminooctane) were synthesized under solvothermal conditions. Compound 1 : triclinic space group P$\bar{1}$ , a = 6.9695(6) Å, b = 13.8095(12) Å, c = 18.0354(17) Å, α = 98.367(11), β = 96.097(11) and γ = 101.281(11)°; compound 2 : monoclinic space group P2₁/m, a = 7.1668(5), b = 25.8986(14), c = 16.0436(11) Å, β = 96.847(8)°; compound 3 : monoclinic space group P2₁/n, a = 11.6194(9), b = 10.2445(5) Å, c = 27.3590(18) Å, β = 91.909(6)°; compound 4 : triclinic space group P$\bar{1}$ , a = 7.0743(6), b = 12.0846(11), c = 13.9933(14) Å, α = 114.723(10), β = 97.595(11), γ = 93.272(11)°. The main structural feature of the two atoms thick layered [Sb₈S₁₃]^2– anion in 1 are large nearly rectangular pores with dimensions 11.2 × 11.7 Å. The layers are stacked perpendicular to [100] to form tunnels being directed along [100]. In contrast to 1 the structure of 2 contains a [Sb₈S₁₃]^2– chain anion with Sb₁₂S₁₂ pores measuring about 8.9 × 11.5 Å. Only if longer Sb–S distances are considered as bonding interactions a layered anion is formed. The chain anion [Sb₆S₁₀]^2– in compound 3 is unique and is constructed by corner‐sharing SbS₃ pyramids. Two symmetry‐related single chains consisting of alternating SbS₃ units and Sb₃S₃ rings are bound to Sb₄S₄ rings in chair conformation. Finally, in the structure of 4 the SbS₃ and SbS₄ moieties are joined corner‐linked to form a chain of alternating SbS₄ units and (SbS₃)₃ blocks. Neighboring chains are connected into sheets that contain relatively large Sb₁₀S₁₀ heterorings. The sheets are further connected by sulfur atoms generating four atoms thick double sheets.     

Determination of 77Se-77Se and 77Se-13C J-coupling parameters for the clusters [Re5OsSe8(CN)6]3- and [Re4Os2Se8(CN)6]2-

We have investigated rarely observed 77Se J-couplings (spin-spin couplings) in the mixed-metal face-capped octahedral clusters [Re5OsSe8(CN)6]3- and [Re4Os2Se8(CN)6]2- at natural abundance. To the best of our knowledge, these are the first observations of Se-Se spin-spin interactions between mu3-Se sites, important for stereochemical assignments in hexarhenium analogues, Chevrel phase materials, and similar cluster materials. NMR techniques such as COSY, INADEQUATE, and 2D J-resolved spectroscopy have been used in conjunction to study these interactions. The two isomers (cis and trans) of [Re4Os2Se8(CN)6]2- were distinguishable, and selective isotopic labeling of [Re5OsSe8(CN)6]3- with 13CN ligands enabled resonances to be assigned by observing the 2J (Se-M-C) couplings. For [Re5OsSe8(CN)6]3-, two different 2J (Se-M-Se) couplings were measurable on a single cluster, and these are related to one another through spin-spin interactions across a face diagonal or along an edge of the cube of inner selenium ligands. A rigorous analysis based on combinatorial math has been invoked to assign the couplings on the basis of the probability of multiple-spin interactions. The face diagonal association is found to result in a J-coupling interaction larger in magnitude than that from coupling along an edge of the cube-information critical for making stereochemical assignments of selenium sites.     

Three‐dimensional Octameric Assembly of Icosahedral M13 Units in [Au8Ag57(Dppp)4(C6H11S)32Cl2]Cl and its [Au8Ag55(Dppp)4(C6H11S)34][BPh4]2 Derivative

The high‐dimensional (that is, three‐dimensional (3D)) assembly of nanomaterials is an effective means of improving their properties; however, achieving this assembly at the atomic level remains challenging. Herein, we obtained a novel nanocluster, [Au₈Ag₅₇(Dppp)₄(C₆H₁₁S)₃₂C_l2]Cl (Dppp=1,3‐bis(diphenylphosphino)propane) showing a 3D octameric assembly mode involving the kernel penetration of eight complete icosahedral Au@Ag₁₀Au₂ units for the first time. The atomically precise structure was determined by single‐crystal X‐ray diffraction, and further confirmed by thermogravimetric analysis, X‐ray photoelectron spectroscopy, and electrospray ionization mass spectrometry measurements. Furthermore, ligand‐induced transformation prompted the conversion of [Au₈Ag₅₇(Dppp)₄(C₆H₁₁S)₃₂Cl₂]Cl, with complete octameric fusion into [Au₈Ag₅₅(Dppp)₄(C₆H₁₁S)₃₄][BPh₄]₂, with incomplete octameric fusion. These observations will hopefully facilitate further research on the assembly of M₁₃ nanobuilding blocks.     

The first noncoordinated phosphonium diylide, [Me2P(C13H8)2]-, and its ylidic and cationic counterparts: synthesis, structural characterization, and interaction with the heavy group 2 metals

Treatment of potassium or lithium fluorenide with MePCl2 generates the organophosphine MeP(C13H9)2, which on reaction with methyl iodide produces the phosphonium species [Me2P(C13H9)2]I in 74% yield. In the solid state, H...I contacts of < 3.3 A help generate a layered structure in which the fluorenyl rings are nearly parallel. On subsequent reaction of [Me2P(C13H9)2]I with either KH or K[N(SiMe3)2], the corresponding neutral phosphoylide, Me2P(C13H9)(C13H8), forms in 67% yield and was structurally characterized. The phosphonium iodide [Me2P(C13H9)2]I was allowed to react with Ae[N(SiMe3)2]2 (Ae = Ca, Ba), and the product from the reaction with the calcium complex was structurally identified as the salt [CaI(thf)5][Me2P(C13H8)2]. The anion, which is outside the coordination sphere of the calcium, represents the first structurally authenticated example of a free phosphonium diylide. The P-C(ylidic) bond length of 1.748(4) A reflects some partial multiple bond character. 1H and 31P NMR spectra suggest that the barium analogue is similar. Density functional theory calculations were performed on representative phosphonium diylides as an aid to interpreting the bonding in this class of compounds. Despite the strong electrostatic attraction that usually drives metal-ligand binding in highly ionic systems, calcium and barium prefer to coordinate to a single iodide ion and several neutral oxygen donors rather than to the charged diylide.     

Synthesis, structure, reactivity, and thermal isomerization of boron-substituted 13-vertex cobaltacarboranes (eta5-Cp)Co(eta6-R2C2B10Me8H2) (R = H, Et)

Reduction of boron-substituted carboranes o-R2C2B10Me8H2 (R = H, Et), thermal isomerization, and nucleophilic reaction of the resultant 13-vertex cobaltacarboranes were studied. Reaction of o-C2B10Me8H4 (1) with excess potassium metal in tetrahydrofuran (THF) gave, after recrystallization from a THF solution of 18-crown-6 ether, [[K(18-crown-6)(THF)2][K(18-crown-6)]][[4-(18-crown-6)-2,3,5,8,9,11,12,13-Me8-4,1,6-KC2B10H4]2] (2) in 78% yield. Interaction of 1 with excess sodium or potassium metal in THF, followed by treatment with CoCl2/CpNa and then aerobatic oxidation, afforded two boron-substituted 13-vertex cobaltacarboranes, 4-Cp-2,3,5,8,9,11,12,13-Me8-4,1,6-CoC2B10Me8H4 (3) and 4-Cp-2,3,5,9,10,11,12,13-Me8-4,1,6-CoC2B10Me8H4 (4), in 15% and 8% yield, respectively. Subsequently, thermal isomerization of 3 and 4 yielded another two new isomers, 4-Cp-2,3,5,6,8,11,12,13-Me8-4,1,9-CoC2B10Me8H4 (5) and 4-Cp-2,3,5,6,7,11,12,13-Me8-4,1,9-CoC2B10Me8H4 (6). Treatment of 3 or 4 with strong bases such as nBuLi and MeLi generated unexpected nucleophilic substitution products 4-nBuCp-2,3,5,8,9,11,12,13-Me8-4,1,6-CoC2B10Me8H4 (7), 4-nBuCp-2,3,5,9,10,11,12,13-Me8-4,1,6-CoC2B10Me8H4 (8a), and 4-MeCp-2,3,5,9,10,11,12,13-Me8-4,1,6-CoC2B10Me8H4 (8b) in good yields. Under the same reaction conditions, however, only one 13-vertex cobaltacarborane, 4-Cp-1,9-Et2-2,5,6,7,8,11,12,13-Me8-4,1,9-CoC2B10Me8H4 (10), was isolated when o-Et2C2B10Me8H2 (9) was used as the starting material. Complex 10 is a thermodynamically stable product and has a substitution pattern different from that of 3-6. These results show that the substituents on either the cage carbon or boron atoms have an important effect on the formation and thermal stability of the 13-vertex metallacarboranes. The formation of these complexes can be rationalized by the diamond-square-diamond mechanism.     

Synthesis, characterization, and theoretical study of stable isomers of C70(CF3)n (n = 2, 4, 6, 8, 10)

Reaction of C70 with ten equivalents of silver(I) trifluoroacetate at 320-340 degrees C followed by fractional sublimation at 420-540 degrees C and HPLC processing led to the isolation of a single abundant isomer of C70(CF3)n for n = 2, 4, 6, and 10, and two abundant isomers of C70(CF3)8. These six compounds were characterized by using matrix-assisted laser desorption ionization (MALDI) mass spectrometry, 2D-COSY and/or 1D 19F NMR spectroscopy, and quantum-chemical calculations at the density functional theory (DFT) level. Some were also characterized by Raman spectroscopy. The addition patterns for the isolated compounds were unambiguously found to be C1-7,24-C70(CF3)2, C1-7,24,44,47-C70(CF3)4, C2-1,4,11,19,31,41-C70(CF3)6, Cs-1,4,11,19,31,41,51,64-C70(CF3)8, C2-1,4,11,19,31,41,51,60-C70(CF3)8, and C1-1,4,10,19,25,41,49,60,66,69-C70(CF3)10 (IUPAC numbering). Except for the last compound, which is identical to the recently reported, crystallographically characterized C70(CF3)10 derivative prepared by a different synthetic route, these compounds have not previously been shown to have the indicated addition patterns. The largest relative yield under an optimized set of reaction conditions was for the Cs isomer of C70(CF3)8 (ca. 30 mol % of the sublimed mixture of products based on HPLC integration). The results demonstrate that thermally stable C70(CF3)n isomers tend to have their CF3 groups arranged on isolated para-C6(CF3)2 hexagons and/or on a ribbon of edge-sharing meta- and/or para-C6(CF3)2 hexagons. For Cs- and C2-C70(CF3)8 and for C2-C70(CF3)6, the ribbons straddle the C70 equatorial belt; for C1-C70(CF3)4, the para-meta-para ribbon includes three polar hexagons; for C1-7,24-C70(CF3)2, the para-C6(CF3)2 hexagon includes one of the carbon atoms on a C70 polar pentagon. The 10.3-16.2 Hz 7JF,F NMR coupling constants for the end-of-ribbon CF3 groups, which are always para to their nearest-neighbor CF3 group, are consistent with through-space Fermi-contact interactions between the fluorine atoms of proximate, rapidly rotating CF3 groups.     

Crystal and molecular structures of heteroligand bis(hexafluoroacetylacetonato)copper(II) complexes with 3-imidazoline nitroxyl radicals,Cu(C5HF6O2)2:L=1:1 (L1=C13H18N3O,L2=C8H15N2O)

Crystal structures were determined for two new derivatives of heteroligand complexes of Cu(C₅HF₆O₂)₂ with nitroxyl radicals derived from 3-imidazoline: Cu(C₅HF₆O₂)₂(C₁₃H₁₈N₃O) (I) and Cu(C₅HF₆O₂)₂(C₈H₁₅N₂O) (II). The unit cell parameters for I are as follows: a=10.555(3), b=15.505(5), c=18.509(6) Å, V = 3029(1) ų, Z=4, d_calc=1.57 g/cm³, space group P2₁2₁2₁. The unit cell parameters for II are as follows: a=16.018(3), b=15.886(3), c=19.665(4) Å, V = 5004(1)ų, Z=8, d_calc=1.68 g/cm³, d_exp=1.68 g/cm³, space group P2₁2₁2₁. The structure of I is molecular. The coordination of the copper ion is a trigonal bipyramid formed by two oxygen atoms of the (hfac) ions and the nitrogen atom of the imidazoline heterocycle in the equatorial plane [Cu–O, 1.91(7), 2.242(7) Å, Cu–N, 2.010(7) Å] and the other oxygen atoms of the (hfac) anion in the axial positions [Cu–O, 1.940(6), 1.963(6) Å]. Complex II is polymeric. The two crystallographically independent Cu(hfac)₂ fragments are linked in a chain by means of two L² ligands. The coordination of the copper ions is a square bipyramid, whose equatorial plane is formed by the oxygen atoms of the (hfac) anion [Cu–O, 1.89(1)–2.03(1) Å]. The axial positions are occupied by nitrogen atoms [Cu–N, 2.52(1), 2.40(1) Å] and an oxygen atom of the NO fragment [Cu–O, 2.96(1), 2.67(1) Å] of different L² ligands. The ...Cu(hfac)₂–L²–Cu(hfac)₂–L₂... chains in the unit cell are located at two levels (x1/4 and 3/4).Institute of Inorganic Chemistry, Siberian Branch, Russian Academy of Sciences. Translated from Zhurnal Strukturnoi Khimii, Vol. 34, No. 2, pp. 126–133, March–April, 1993.     

Synthesis,characterization and in vitro cytotoxicity screening of some triarylbismuth(V) di(N‐salicylidene)amino carboxylates and the crystal structure of (2‐HOC6H4CHNCH2CO2)2Bi(C6H5)3

Four novel triarylbismuth(V) di(N‐salicylidene)amino carboxylates were synthesized. Their structures were confirmed by IR, ¹H NMR, ¹³C NMR and elemental analysis. The crystal structure of (2‐HOC₆H₄CH?NCH₂CO₂)₂BiPh₃ was determined by X‐ray diffraction. The in vitro cytotoxicity of all compounds against three human cancer cells (HL‐60, BGC‐823 and MDA‐MB‐435) at 10 µM are reported. Copyright © 2005 John Wiley & Sons, Ltd.