Preparation and enantiomer separation behavior of selectively methylated β-cyclodextrin-bonded stationary phases for high performance chromatography

Native and three selectively methylated β-cyclodextrin (β-CD)-bonded stationary phases without an unreacted spacer arm for liquid chromatography were prepared, where heptakis(2-O-methyl)-β-CD, heptakis(3-O-methyl)-β-CD and heptakis(2,3-di-O-methyl)-β-CD were used as the methylated β-CDs. The enantiomer separation abilities of the resulting β-CD stationary phases for 12 pairs of dansylamino acid enantiomers and six pairs of N-3,5-dinitrobenzoyl amino acid methyl esters as model solutes were investigated. The effects of pH and methanol content of the mobile phase on the retention and resolution were examined to optimize the mobile phase conditions. The optimum resolution for the dansylamino acids was achieved using a mobile phase consisting of 1.0% triethylammonium acetate buffer (pH 5.0)–methanol (v/v 4/6) on the β-CD stationary phase. Heptakis(3-O-methyl)- and heptakis(2,3-di-O-methyl)-β-CD-bonded stationary phases showed little enantiomer separation abilities for the dansylamino acids. The heptakis(2-O-methyl)-β-CD-bonded stationary phase exhibited no enantioselectivities for those solutes.

For the N-3,5-dinitrobenzoyl amino acid methyl esters, the optimum resolution was achieved using a mobile phase consisting of 1.0% triethylammonium acetate buffer (pH 5.0)–methanol (v/v 9/1) on a heptakis(2-O-methyl)-β-CD stationary phase. The heptakis(2,3-di-O-methyl)-β-CD-bonded stationary phases exhibited no enantioselectivities for the N-3,5-dinitrobenzoyl amino acid methyl esters. β-CD and heptakis(3-O-methyl)-β-CD-bonded stationary phases had no enantiomer separation abilities for those solutes except for the N-3,5-dinitrobenzoyl phenylalanine methyl ester.     

Oligodeoxynucleotides with extended zwitter-ionic internucleotide linkage

Two non-natural nucleoside analogues, N-(2-hydroxyethyl)-2′,5′-dideoxy-5′-aminothymidine (dT^NH) and N-(2-hydroxyethyl)-N-methyl-2′,5′-dideoxy-5′-aminothymidine (dT^NMe), have been prepared and used in the synthesis of oligodeoxythymidilates and mixed-sequence oligodeoxynucleotides, modified at internucleotide linkages. Both modified oligodeoxythymidilates and mixed-sequence oligodeoxynucleotides have been shown to form zwitter-ionic phosphate–amine pairs as evidenced by their decreased electrophoretic mobility in denaturing polyacrylamide gel.     

Synthesis, characterization and catalytic activity in Heck-type reactions of orthometallated Pd and Pt complexes derived from (1R,2R)-1,2-diaminocyclohexane

The chiral bis-imine (1R,2R)-C₆H₁₀-[E---N=CH---C₆H₃---3,4-(OMe)₂]₂ 1 (LH) reacts with [Pd(OAc)₂] (1:1 molar ratio; OAc=acetate) giving the orthometallated [Pd(OAc)(C₆H₂---4,5-(OMe)₂---2-CH=N-(1R,2R)-C₆H₁₀---N=CH---C₆H₃-3′,4′-(OMe)₂-κ-C,N,N)] 2 (abbreviated as [Pd(OAc)(L-κ-C,N,N)]), through C---H bond activation on only one of the aryl rings and N,N-coordination of the two iminic N atoms. 2 reacts with an excess of LiCl to give [Pd(Cl)(L-κ-C,N,N)] 3. The reaction of 3 with AgClO₄ and neutral or anionic ligands L′ (1:1:1 molar ratio) affords [Pd(L-κ-C,N,N)(L′)](ClO₄) (L′=PPh₃ 4a, NCMe 5, pyridine 6, p-nitroaniline 7) or [Pd(I)(L-κ-C,N,N)] 8. Complex 4a reacts with wet CDCl₃ giving [Pd(C₆H₂---4,5-(OMe)₂---2-CH=N-(1R,2R)---C₆H₁₀---NH₂-κ-C,N,N)(PPh₃)](ClO₄) 4b as a result of the hydrolysis of the C=N bond not involved in the orthometallated ring. The molecular structure of 4b·CH₂Cl₂ has been determined by X-ray diffraction methods. Cleavage of the Pd---N bond trans to the C_aryl atom can be accomplished by coordination of strongly chelating ligands, such as acetylacetonate (acac) or bis(diphenylphosphino)ethane (dppe), forming [Pd(acac-O,O′)(L-κ-C,N)] 9 and [Pd(L-κ-C,N)(dppe-P,P′)](ClO₄) 12, while classical N,N′-chelating ligands such as 1,10-phenantroline (phen) or 2,2′-bipyridyl (bipy) behave as monodentate N-donor ligands yielding [Pd(L-κ-C,N,N)(κ¹-N-phen)](ClO₄) 10 and [Pd(L-κ-C,N,N)(κ¹-N-bipy)](ClO₄) 11. Treatment of 1 with PtCl₂(DMSO)₂ (1:1 molar ratio) in refluxing 2-methoxyethanol gives Cl₂Pt[(NH₂)₂C₆H₁₀---N,N′] 13a and [Pt(Cl)(C₆H₂---4,5-(OMe)₂---2-CH=N-(1R,2R)---C₆H₁₀---NH₂-κ-C,N,N)] 13b, while [Pt(Cl)(L-κ-C,N,N)] 14 can be obtained by reaction of [Pt(μ-Cl)(η³-2-Me---C₃H₄)]₂ with 1 in refluxing CHCl₃. Complexes 2 and 3 catalyzed the arylation of methyl acrylate giving good yields of the corresponding methyl cinnamates and TON up to 847 000. Complex 3 also catalyzes the hydroarylation of 2-norbornene, but with lower yields and without enantioselectivity.     

Molecular and crystal structures of N,N′-propylene- and N,N′-phenylene-diylbis [3-(1-aminoethyl)-6-methyl-2H-pyran-2,4(3H)-dione]

Two macrocyclic ligands, N,N′-propylene-diylbis[3-(1-aminoethyl)-6-methyl-2H-pyran-2,4(3H)-dione] I and N,N′-phenylene-diylbis[3-(1-aminoethyl)-6-methyl-2H-pyran-2,4(3H)-dione] II, have been prepared by the condensation of dehydroacetic acid (3-acetyl-4-hydroxy-6-methyl-2H-pyran-2-one) with 1,2-phenylenediamine and 1,3-propylenediamine. They have been characterized by means of elemental analysis, IR spectroscopy as well as by X-ray crystallography. The molecular structures of the compounds I and II can be described as consisting of two β-enaminone-2-pyrone rings interlaced with either alkyl chain in I or phenyl ring in II. The X-ray studies confirmed the existence of strong N–HO intramolecular hydrogen bonds in both structures. Their lengths are in accordance to lengths of RAHB intramolecular hydrogen bonds in 1,3-diketones, aryl-hydrazones, β-enaminones and related heterodienes (2.5–2.6 Å) [P. Gilli, V. Bertolasi, V. Ferretti and G. Gilli, J. Am. Chem. Soc., 122 (2000) 10405].     

A new bibenzyl derivative from Pleione bulbocodioides

A new bibenzyl derivative 1, named 2-（4＇＇-hydroxybenzy1）-3-（3＇-hydroxyphenethy1）-5-methoxy-cyclohexa-2,5-diene-1,4- dione, and two known stilbenoids （2, 3） were isolated from the tubers of Pleione bulbocodioides （Franch.） Rolfe. Their structures were elucidated by spectroscopic methods.     

Structural and spectral studies of N-2-(pyridyl)-, N-2-(3-, 4-, 5-, and 6-picolyl)- and N-2-(4,6-lutidyl)-N′-2-thiomethoxyphenylthioureas

Structures of the following compounds have been obtained: N-(2-pyridyl)-N′-2-thiomethoxyphenylthiourea, PyTu2SMe, monoclinic, P2₁/c, a=11.905(3), b=4.7660(8), c=23,532(6) Å, β=95.993(8)°, V=1327.9(5) ų and Z=4; N-2-(3-picolyl)-N′-2-thiomethoxyphenyl-thiourea, 3PicTu2SeMe, monoclinic, C2/c, a=22.870(5), b=7.564(1), c=16.941(4) Å, β=98.300(6)°, V=2899.9(9) ų and Z=8; N-2-(4-picolyl)-N′-2-thiomethoxyphenylthiourea, 4PicTu2SMe, monoclinic P2₁/a, a=9.44(5), b=18.18(7), c=8.376(12) Å, β=91.62(5)°, V=1437(1) ų and Z=4; N-2-(5-picolyl)-N′-2-thiomethoxyphenylthiourea, 5PicTu2SMe, monoclinic, C2/c, a=21.807(2), b=7.5940(9), c=17.500(2) Å, β=93.267(6)°, V=2893.3(5) ų and Z=8; N-2-(6-picolyl)-N′-2-thiomethoxyphenylthiourea, 6PicTu2SMe, monoclinic, P2₁/c, a=8.499(4), b=7.819(2), c=22.291(8) Å, β=90.73(3)°, V=1481.2(9) ų and Z=4 and N-2-(4,6-lutidyl)-N′-2-thiomethoxyphenyl-thiourea, 4,6LutTu2SMe, monoclinic, P2₁/c, a=11.621(1), b=9.324(1), c=14.604(1) Å, β=96.378(4)°, V=1572.4(2) ų and Z=4. Comparisons with other N-2-pyridyl-N′-arylthioureas having substituents in the 2-position of the aryl ring are included.     

Studies on the synthesis of biphenylneolignans. Part 1: Enantioselective synthesis of (S,S)- and (R,R)-2,2′-dimethoxy-4-(3-hydroxy-1-propenyl)-4′-(1,2,3-trihydroxypropyl)diphenyl ether

Two erythro-isomers of 2,2′-dimethoxy-4-(3-hydroxy-1-propenyl)-4′-(1,2,3-trihydroxypropyl)diphenyl ether, (7′S, 8′S)-9 and (7′R, 8′R)-9, were synthesized in seven steps, in which an improved method for the synthesis of the key intermediate 3 was developed. The absolute configuration of the target molecules was also confirmed.     

Excited-state intramolecular proton transfer (ESIPT) in 2-(2′-hydroxyphenyl)-oxazole and -thiazole

The azoles 2-(2′-hydroxyphenyl)oxazole (HPO) and 2-(2′-hydroxyphenyl)-4-methylthiazole (HPT) have been synthesised and studied in order to compare their photophysical characteristics. Their absorption and emission properties are reported in non-polar, alcoholic and aqueous media. Ground and excited state pK data were determined by spectroscopy and a model is proposed to explain the behaviour of HPT and HPO as a function of the pH. Excitation spectra and quantum chemical calculations suggest an equilibrium of ground state conformers. The calculations also predict a small energy barrier for rotation in the first excited singlet state for the proton transferred tautomers. The resulting twisted structure of the tautomer form possesses a biradicaloid nature, and is near-degenerate in energy with the first excited triplet state.     

Structural, spectral and thermal studies of N-2-(4-picolyl)- and N-2-(6-picolyl)-N′-(2-chlorophenyl)thioureas and N-2-(6-picolyl)-N′-(2-bromophenyl)thiourea

N-2-(4-picolyl)-N′-2-chlorophenylthiourea, 4PicTu2Cl, monoclinic, P2₁/c, a=10.068(5), b=11.715(2), β=96.88(4)°, and Z=4; N-2-(6-picolyl)-N′-2-chlorophenylthiourea, 6PicTu2Cl, triclinic, P-1, a=7.4250(8), b=7.5690(16), c=12.664(3) Å, =105.706(17), β=103.181(13), γ=90.063(13)°, V=665.6(2) ų and Z=2 and N-2-(6-picolyl)-N′-2-bromophenylthiourea, 6PicTu2Br, triclinic, P-1, a=7.512(4), b=7.535(6), c=12.575(4) Å, a=103.14(3), β=105.67(3), γ=90.28(4)°, V=665.7(2) ų and Z=2. The intramolecular hydrogen bonding between N′H and the pyridine nitrogen and intermolecular hydrogen bonding involving the thione sulfur and the NH hydrogen, as well as the planarity of the molecules, are affected by the position of the methyl substituent on the pyridine ring. The enthalpies of fusion and melting points of these thioureas are also affected. ¹H NMR studies in CDCl₃ show the NH′ hydrogen resonance considerably downfield from other resonances in their spectra.     

Synthesis and purity assessment of tetra- and pentaacyl lipid A of Chlamydia containing (R)-3-hydroxyicosanoic acid

Based on structural data of lipid A from Chlamydia trachomatis strains, chemically pure tetra- and pentaacyl 1,4′-bisphosphoryl as well as the related 4′-monophosphoryl derivatives of lipid A were synthesized. (R)-3-Hydroxyicosanoic acid as a chiral constituent was prepared via Noyori-reduction of methyl-3-oxoicosanoic acid. Synthetic intermediates were O-acylated with myristoic acid residues at positions 3 and 3′ and N-acylated with (R)-3-hydroxyicosanoic acid at both glucosamine units. Efficient purification methods for highly hydrophobic long-chain tri-, tetra- and pentaacyl progenitors of lipid A have been developed. Purity and homogeneity of the synthetic target compounds were confirmed by NMR and MS-data as well as a sensitive immunostaining approach. The tetra- and pentaacyl species serve as biomedical probes to investigate the endotoxic potential of chlamydial lipid A and to clarify its role in Chlamydia associated infections.     

Ethylene oligomerization by diimine iron(II) complexes/EAO

The catalytic properties of a series of Fe(II) diimine complexes (diimine=N,N′-o-phenylenebis(salicylideneaminato), N,N′-ethylenebis(salicylideneaminato), N,N′-o-phenylenebisbenzal, N,N′-ethylenebisbenzal) in combination with ethylaluminoxane (EAO) for ethylene oligomerization have been investigated. Treatment of the iron(II) complexes with EAO in toluene generates active catalytic systems in situ that oligomerize ethylene to low-carbon olefins. The effects of reaction temperature, ratios of Al/Fe and reaction periods on catalytic activity and product distribution have been studied. The activity of complex FeCl₂(PhCH=o-NC₆H₄N=CHPh) with EAO at 200°C is 1.35×10⁵ g oligomers/mol Fe·h, and the selectivity of C_4–10 olefins is 84.8%.     

Synthesis of 1,1′-methylenedi[(1R,1′R,3R,3′R,5R,5′R)-8-oxabicyclo[3.2.1]oct-6-en-3-ol] and derivatives: precursors of long-chain polyketides

Racemic 1,1′-methylene[(1RS,1′RS,3RS,3′RS,5RS,5′RS)-8-oxabicyclo[3.2.1]oct-6-en-3-ol] ((±)-6) derived from 2,2′-methylenedifuran has been resolved kinetically with Candida cyclindracea lipase-catalysed transesterification giving 1,1′-methylenedi[(1R,1′R,3R,3′R,5R,5′R)-8-oxabicyclo[3.2.1]oct-6-en-3-ol] (−)-6 (30% yield, 98% ee) and 1,1′-methylenedi[(1S,1′S,3S,3′S,5S,5′S)-8-oxabicyclo[3.2.1]oct-6-en-3-yl] diacetate (+)-8, (40% yield, 98% ee). These compounds have been converted into 1,1′-methylenedi[(4S,4′S,6S,6′S)- and (4R,4′R,6R,6′R)-cyclohept-1-en-4,6-diyl] derivatives.     

Asymmetric synthesis catalyzed by chiral ferrocenylphosphine-transition metal complexes VII. New chiral ferrocenylphosphines with C2 symmetry

A new chiral ferrocenylphosphine ligand, 2,2′-bis[1-N,N-dimethylamino)ethyl]-1,1′-bis(diphenylphosphino)ferrocene (2), which has C₂ symmetry and a functional group on the side chain, was prepared by ortho-lithiation and phosphination of 1,1′-bis[1-N,N-dimethylamino)ethyl]ferrocene followed by optical resolution; recrystallization of the diammonium salt with tartaric acid. An X-ray diffraction study of PdCl₂[(+)-2] showed that the complex has square-planar geometry with two cis chlorine and two phosphorus atoms and ligand (+)-2 has an (S) configuration on the 1-dimethylaminoethyl side chain and (R) ferrocene planar chirality.     

Asymmetric syntheses of protected (2S,3S,4S)-3-hydroxy-4-methylproline and 4′-tert-butoxyamido-2′-deoxythymidine

Described herein is a versatile approach to (i) (2S,3S,4S)-3-hydroxy-4-methylproline 3, a constituent of echinocandins and related oligopeptide antibiotics; (ii) (2S,3S)-3-hydroxyproline 1; (iii) (2R,3S)-3-hydroxyprolinol 5, and (iv) 4′-tert-butoxyamido-2′-deoxythymidine 6b. The method features a stepwise regio- and diastereoselective reductive furylation of the protected (3S,4S)-4-methylmalimide 10, (S)-malimide 9, and a chemoselective oxidative transformation of the furyl group to the carboxyl group as the key steps.     

Synthesis of isotopically labeled puromycin derivatives for kinetic isotope effect analysis of ribosome catalyzed peptide bond formation

The mechanism by which the ribosome catalyze peptide bond formation remains controversial. Here we describe the synthesis of dinucleotides that can be used in kinetic isotope effect experiments to assess the transition state of ribosome catalyzed peptide bond formation. These substrates are the isotopically labeled dinucleotide cytidylyl-(3′-5′)-3′-amino-3′-deoxy-3′-l-phenylalanyl-N⁶,N⁶-dimethyladenosine (Cm⁶A_NPhe-NH₂) and cytidylyl-(3′-5′)-3′-amino-3′-deoxy-3′-(l-2-hydroxy-3-phenylpropionyl)-N⁶,N⁶-dimethyladenosine (Cm⁶A_NPhe-OH). These substrates are active in peptide bond formation and can be used to measure kinetic isotope effects in ribosome catalyzed protein synthesis.     

N,N′-bis(substituted-phenyl)oxamides and their dinuclear pentacoordinate nickel(II) complexes

The preparation, spectroscopic characterization and magnetic study of N,N′-bis(substituted-phenyl)oxamidate-bridged nickel(II) dinuclear complexes of formula {[Ni(N₃-mc)]₂(μ-CONC₆H₄-X)}(PF₆)₂ (N₃-mc = 2,4,4-trimethyl-1,5,9-triazacyclo-dodec-1-ene (Me₃-N₃-mc) or 2,4,4,9-tetramethyl-1,5,9-triazacyclododec-1-ene (Me₄-N₃-mc), X = 2-Cl, 4-Cl, 2-OCH₃, 4-OCH₃) are reported. These paramagnetic nickel(II) complexes have been characterized by both one- and two-dimensional (COSY) ¹H NMR techniques. The COSY spectrum of 5 has allowed to achieve the assignment of the phenyl protons of the N,N′-diphenyloxamidate. The crystal structures of [Ni(Me₃-N₃-mc)(μ-CONC₆H₄-4-Cl)]₂(PF₆)₂ (6), [Ni(Me₃-N₃-mc)(μ-CONC₆H₄-4-OMe)]₂(PF₆)₂ (8) and [Ni(Me₄-N₃-mc)(μ-CONC₆H₄-2-Cl)]₂(PF₆)₂ (9) have been determined and their magnetic properties have been studied. The value of magnetic coupling between the two nickel(II) ions across the oxamidate bridge [J = − 37.6 (6), −39.9 (8) and −39.7 cm⁻¹ (9)] is sensitive to the distortion of the coordination sphere of the metal ions and the topology of the molecular bridge.     

Synthesis of new chiral amino ether derivatives: synthetic application of meso aziridinium ions prepared from β-amino alcohols

Methods of synthesis of new chiral amino ether derivatives through the opening of aziridinium ions, prepared in situ using trans-(±)-2-(1-N,N-dialkylamino)cyclohexyl mesylate with (R)-(+)-1,1′-bi-2-naphthol, are described. The (R,R,R)-diastereomer was obtained as the major product and isolated as an enantiopure salt, and characterized by single crystal X-ray analysis. The C₂-chiral (R,R,R,R,R)-diamino ether was obtained as the major product by opening of the aziridinium ion, prepared using trans-(±)-2-(1-pyrrolidino)cyclohexyl mesylate and (R)-(+)-1,1′-bi-2-naphthol in the presence of aq NaOH. This was also characterized by single crystal X-ray analysis.     

Cyano-bridged bimetallic complexes of copper(II) with tetracyanonickelate(II). Crystal structure of [Cu(dpt)Ni(CN)4]

Five new complexes of composition [Cu(dpt)Ni(CN)₄] (1) (dpt=dipropylenetriamine), [Cu(dien)Ni(CN)₄]·2H₂O (2) (dien=diethylenetriamine), [Cu(N,N′-dimeen)Ni(CN)₄]·H₂O (3) (N,N′-dimeen=N,N′-dimethylethylenediamine), [Cu(N,N-dimeen)Ni(CN)₄]·H₂O (4) (N,N-dimeen=N,N-dimethylethylenediamine) and [Cu(trimeen)Ni(CN)₄] (5) (trimeen=N,N,N′-trimethylethylenediamine) have been obtained by the reactions of the mixture of Cu(ClO₄)₂·6H₂O, appropriate amine and K₂[Ni(CN)₄] in water and have been characterized by IR and UV–Vis spectroscopies and magnetic measurements. The crystal structure of [Cu(dpt)Ni(CN)₄] (1) has been determined by single-crystal X-ray analysis. The structure of 1 consists of a one-dimensional polymeric chain ---Cu(dpt)---NC---Ni(CN)₂---CN---Cu(dpt)--- in which the Cu(II) and Ni(II) atoms are linked by CN groups. The nickel atom is four coordinate with four cyanide-carbon atoms (two cyano groups are terminal and two cyano groups (in cis fashion) are bridged) in a square-planar arrangement and the copper atom is five coordinate with two cyanide-nitrogen and three dpt-nitrogen atoms, in a distorted square-pyramidal arrangement. The temperature dependence of magnetic susceptibility (2–300 K) was measured for compound 1. The magnetic investigation showed the presence of a very weak antiferromagnetic interaction (J=−0.16 cm⁻¹) between the copper atoms within each chain through the diamagnetic Ni(CN)₄ ²⁻ ions.     

Oligoribonucleotide synthesis by the use of 1-(2-cyanoethoxy)ethyl (CEE) as a 2′-hydroxy protecting group

A novel method for the synthesis of oligoribonucleotides using 1-(2-cyanoethoxy)ethyl (CEE) as a 2′-hydroxy protecting group has been developed. A CEE group was introduced to the 2′-position of N-acyl-3′,5′-O-silyl-protected ribonucleosides under acidic conditions in good yields. The 2′-O-CEE group was found to be stable in an aqueous or ethanolic ammonia and was quickly removed by treatment with anhydrous tetrabutylammonium fluoride (TBAF). A combination of the use of N-acyl and 2′-O-CEE protecting groups enabled a reliable and complete two-step deprotection, first with NH₃–EtOH, then with TBAF in THF, without cleavage of internucleotidic linkages.     

The interplay of skeletal deformations and ultrafast excited-state intramolecular proton transfer: Experimental and theoretical investigation of 10-hydroxybenzo[h]quinoline

The excited-state intramolecular proton transfer in the aromatic polycycle 10-hydroxybenzo[h]quinoline is investigated by means of transient absorption experiments with 30 fs time resolution, classical dynamics and wavepacket dynamics. The experiments establish the ultrafast transfer after UV excitation and show signatures of coherent vibrational motion in the keto product. To elucidate details of the proton transfer mechanism, the classical dynamics is also performed for 2-(2′-hydroxyphenyl)benzothiazole and the results are compared. For both systems the proton transfer takes place on the ultrafast scale of 30–40 fs, with good agreement between the theoretical investigations and the measurements. The dynamics simulations show that for both molecules the proton is handed over by means of skeletal deformation of the molecule. Due to the more rigid structure of 10-hydroxybenzo[h]quinoline the hydrogen migration mode participates more actively than in 2-(2′-hydroxyphenyl)benzothiazole.