Crystal and molecular structure studies of 1′-Benzyl-8-(4-fluorobenzyl)-8-azaspiro[bicyclo-[3.2.1]octane-3,4′-imidazolidine]-2′,5′-dione

The title compound 1′-Benzyl-8-(4-fluorobenzyl)-8-azaspiro[bicyclo[3.2.1] octane-3,4′-imidazolidine]-2′,5′-dione, C₂₃H₂₃FN₃O₂ is synthesized and the structure is investigated by X-ray diffraction studies. The compound crystallizes in the triclinic crystal class in the P1 space group. The hydantoin ring adopts a planar conformation and is affected by the π conjugation. The pyrrolidine and piperidine rings in the bicyclo octane moiety adopt envelope and chair conformations respectively. The structure exhibits both inter- and intramolecular hydrogen bonds of the type N-H...O, C-H...O, and C-H...N. The oxygen atom in the hydantoin ring simultaneously accepts two hydrogen bonds to form a three-centered hydrogen bonding pattern.     

Hydrogen bonded complexes of cyanuric acid with pyridine and guanidinium carbonate

Hydrogen bonded complexes of cyanuric acid (CA) with pyridine, [C₃N₃H₃O₃:C₅H₅N], 1, and guanidinium carbonate [C₃H₂N₃][C(NH₂)₃],2, have been prepared at room temperature and characterized by single-crystal X-ray diffraction. Structure of 1 shows pyridine molecules substituting the inter-tape hydrogen bond in CA by N-H… N and C-H…O hydrogen bonds. The structure reveals CA-pyridine hydrogen-bonded single helices held together by dimeric N-H…O hydrogen bonding between CA molecules. In2, the CA tapes, resembling a sine wave interact with the guanidinium cations through N-H…O and N-H…N hydrogen bonds forming guanidinium cyanurate sheets.     

Structure of the C17H20FN3O 32+ ·2HSO 4? · H2O compound

A new compound of C₁₇H₂₀FN₃O₃²⁺ · 2HSO₄⁻·H₂O [ciprofloxacindi-um bis(hydrosulfate) monohydrate], C₁₇H₁₈FN₃O₃ 1-cyclopropyl-6-fluoro-1,4-dihydro-4-oxo-7-(1-piperazinyl)-3-quinolinecarboxylic acid (CfH, ciprofloxacin) is obtained and its crystal structure is determined. The crystal contains CfH₃²⁺ and HSO₄⁻ ions and crystallization water molecules. Hydrogen (H3), which forms an intramolecular hydrogen bond with oxygen O2 of the carboxyl group, is attached to the carbonyl O1 atom. Hydrogen H4 of the carboxyl group is hydrogen bonded to the crystallization water molecule which links CfH₃²⁺ with two HSO₄⁻ groups by hydrogen bonds. Both H atoms at N3 of the piperazine ring form hydrogen bonds with two oxygen atoms of other HSO₄⁻ anions. Intramolecular hydrogen bonds of two types are present in the CfH₃²⁺ cation. One of them forms a six-membered ring, bonding O1 and O2 atoms, while the other, also enclosing a six-membered ring, links fluorine and carbon C14 atoms. Original Russian Text Copyright ? 2009 by A. D. Vasiliev, N. N. Golovnev, and I. A. Baidina __________ Translated from Zhurnal Strukturnoi Khimii, Vol. 50, No. 1, pp. 165–168, January–February, 2009.     

Investigation of regioselectivity on the reaction of 5-bromo-2,4-dichloro-6-methylpyrimidine with ammonia

Regioselective displacement reaction of ammonia with 5-bromo-2,4-dichloro-6-methylpyrimidine was studied by X-ray crystallography analysis and showed the formation of 5-bromo-2-chloro-6-methylpyrimidin-4-amine as a main product. Reaction of the latter compound with secondary amines in boiling ethanol afforded 4-amino-5-bromo-2-substituted aminopyrimidines. The synthesized compound in this paper crystallized in the monoclinic crystal system space group P2₁/n. In the title cocrystal, 5-bromo-2-chloro-6-methylpyrimidin-4-amine·3H₂O, the asymmetric unit contains one crystallographically independent 5-bromo-2-chloro-6-methylpyrimidin-4-amine and three crystallization of water molecules. The typical intramolecular O−H⋯N as well as O−H⋯O hydrogen bond is observed in the crystalline network of the title compound. It is interesting to point out that the crystal structure is further stabilized by O−H⋯O hydrogen bonds created by (H₂O)_∞ clusters.     

Azetidine,pyrrolidine and hexamethyleneimine at 170 K

The crystal structures of the cyclic amines azetidine (C₃H₇N), pyrrolidine (C₄H₉N) and hexamethyleneimine (homopiperidine, C₆H₁₃N), of the series (CH₂)_nNH, with n = 3, 4 and 6, respectively, have been determined at 170 K, following in situ crystallization from the melt. These structures provide crystallographic data to complete the homologous series of cyclic amines (CH₂)_nNH, for n = 2–6. Azetidine and pyrrolidine contain chains propagating along 2₁ screw axes, in which the molecules are linked by co-operative N—H...N hydrogen bonds. Azetidine has two molecules in its asymmetric unit, while pyrrolidine has only one. Hexamethyleneimine contains tetrameric hydrogen-bonded rings formed about crystallographic inversion centres, with two molecules in its asymmetric unit. The observation of crystallographically distinct molecules in the hydrogen-bonded chains of azetidine and cyclic hydrogen-bonded motifs in hexamethyleneimine is consistent with expectations derived from comparison with monoalcohols forming chains or rings by co-operative O—H...O hydrogen bonds. The next member of the cyclic amine series, heptamethyleneimine, forms a cubic plastic phase on cooling from the melt.     

Replacing the hydrogen in the intermolecular hydrogen bond of the cyanuric acid-bipyridyl adduct by Ag(I)

A complex between cyanuric acid (CA), 4,4′-bipyridyl (BP) and Ag(I), with the composition, [Ag₂(C₃H₂N₃O₃-κN)₂ (C₁₀H₈N₂-κN)] has been prepared. Crystal structure analysis shows that it has a chain structure in which the CA molecules are linked to the BP units through silver atoms by the formation of N-Ag-N bonds, wherein one of the hydrogens of CA is replaced by Ag(I), showing thereby the chains connected to one another by N-H...O hydrogen bonds formed between the CA molecules. This intermolecular chain structure resembles the chain structure of the CA.BP adduct where CA-BP-CA chains formed by N-H...N hydrogen bonds are linked to one another by N-H...O hydrogen bonds between the CA molecules.     

Synthesis and Crystal Structure of a Novel Supramolecular Compound [Mg(H_2O)_6](C_(16)H_(11)O_4SO_3)_2·10H_2O

IntroductionMolecularpolymerwithonedimensionalormultidimen sionalstructureassemblingthroughhydrogenbondsisanim portantresearchcontentinthesupramolecularchemistryandcrystalenginnering .1,2 Withthedevelopmentofnewtypefunctionalmaterialssuchasmolecularmagnetic ,selectedcatalysis ,reversiblecatalysis ,reversiblehost guestmolecular(ion)exchangeetc.,3themoleculardesignandsynthesishavealreadyattractedconsiderableattentioninsupramolecu larsystem .Thesupramolecularcomplexesandorganiccom poundscontainin…     

2‐Ethyl‐6‐methylpyridin‐3‐ol and its salt bis(2‐ethyl‐3‐hydroxy‐6‐methylpyridinium) succinate

The title compounds, C₈H₁₁NO, (I), and 2C₈H₁₂NO⁺·C₄H₄O₄²⁻, (II), both crystallize in the monoclinic space group P2₁/c. In the crystal structure of (I), intermolecular O—H...N hydrogen bonds combine the molecules into polymeric chains extending along the c axis. The chains are linked by C—H...π interactions between the methylene H atoms and the pyridine rings into polymeric layers parallel to the ac plane. In the crystal structure of (II), the succinate anion lies on an inversion centre. Its carboxylate groups interact with the 2‐ethyl‐3‐hydroxy‐6‐methylpyridinium cations via intermolecular N—H...O hydrogen bonds with the pyridine ring H atoms and O—H...O hydrogen bonds with the hydroxy H atoms to form polymeric chains, which extend along the [01] direction and comprise R₄⁴(18) hydrogen‐bonded ring motifs. These chains are linked to form a three‐dimensional network through nonclassical C—H...O hydrogen bonds between the pyridine ring H atoms and the hydroxy‐group O atoms of neighbouring cations. π–π interactions between the pyridine rings and C—H...π interactions between the methylene H atoms of the succinate anion and the pyridine rings are also present in this network.     

4‐Aminopyridinium hydrogen maleate

The title compound, C₅H₇N₂⁺·C₄H₃O₄⁻, crystallizes in space group P2₁ with one ion pair in the asymmetric unit. The hydrogen maleate anion possesses nearly planar geometry and displays an extremely short intramolecular O—H...O hydrogen bond, with an O...O distance of 2.4198 (19) Å. Classical N—H...O hydrogen bonds, together with short C—H...O contacts, generate an extensive hydrogen‐bonding network.     

2′,4′‐Di­hydroxy‐3‐methoxy‐α,β‐di­hydro­chalcone and 2′,4‐di­hydroxy‐α,β‐di­hydro­chalcone: supramolecular structures formed by O—H⋯O,C—H⋯O and stacking interactions

The crystal structures of 2′,4′‐di­hydroxy‐3‐methoxy‐α,β‐di­hydro­chalcone, C₁₆H₁₆O₄, and 2′,4‐di­hydroxy‐α,β‐di­hydro­chalcone, C₁₅H₁₄O₃, have been determined. In both compounds, the structure consists of two nearly planar six‐membered aromatic rings connected by a propanal chain, which is bent in the methoxy compound and almost straight in the other compound. In the crystal structures, the molecular units of both compounds are linked by O—H⋯O hydrogen bonds to form infinite one‐dimensional chains. Hydro­gen bonds and C—H⋯O contacts in the crystal structures were studied by topological analysis of charge density based on Hartree–Fock calculations. Almost all of the investigated C—H⋯O contacts should be characterized as weak hydrogen bonds.     

Mixed cobalt(III) complexes with aromatic amino acids and di­amines. III.

The title compound, [Co(C₉H₁₀NO₃)₂(C₂H₈N₂)]Cl·4H₂O, is one of six possible diastereomers of the (1,2‐di­amino­ethane)­bis(S‐tyrosinato)­cobalt(III) complex. The cobalt(III) ion has an octahedral coordination, with three five‐membered chelate rings which have deformed coordination angles and coordinated O atoms in trans positions. In comparison with the previously reported crystal structure of the Δ‐C₁‐cis(O) diastereomer [Miodragovi?et al. (2001). Enantiomer, 6 , 299–308], the compound presented in this paper has more planar five‐membered amino­carboxyl­ate rings. Complex cations, chloride anions and water mol­ecules of crystallization are linked together by a network of hydrogen bonds. The chloride anions lie approximately between two Co atoms and form hydrogen bonds with all coordinated NH₂ groups. In the crystal structure, there is a weak intermolecular π?π interaction between the phenyl rings.     

Three‐dimensional hydrogen‐bonded structures in the hydrated proton‐transfer salts of isonipecotamide with the dicarboxylic oxalic and adipic acid homologues

The structures of the 1:1 hydrated proton‐transfer compounds of isonipecotamide (piperidine‐4‐carboxamide) with oxalic acid, 4‐carbamoylpiperidinium hydrogen oxalate dihydrate, C₆H₁₃N₂O⁺·C₂HO₄⁻·2H₂O, (I), and with adipic acid, bis(4‐carbamoylpiperidinium) adipate dihydrate, 2C₆H₁₃N₂O⁺·C₆H₈O₄²⁻·2H₂O, (II), are three‐dimensional hydrogen‐bonded constructs involving several different types of enlarged water‐bridged cyclic associations. In the structure of (I), the oxalate monoanions give head‐to‐tail carboxylic acid O—H...O_carboxyl hydrogen‐bonding interactions, forming C(5) chain substructures which extend along a. The isonipecotamide cations also give parallel chain substructures through amide N—H...O hydrogen bonds, the chains being linked across b and down c by alternating water bridges involving both carboxyl and amide O‐atom acceptors and amide and piperidinium N—H...O_carboxyl hydrogen bonds, generating cyclic R₄³(10) and R₃²(11) motifs. In the structure of (II), the asymmetric unit comprises a piperidinium cation, half an adipate dianion, which lies across a crystallographic inversion centre, and a solvent water molecule. In the crystal structure, the two inversion‐related cations are interlinked through the two water molecules, which act as acceptors in dual amide N—H...O_water hydrogen bonds, to give a cyclic R₄²(8) association which is conjoined with an R₄⁴(12) motif. Further N—H...O_water, water O—H...O_amide and piperidinium N—H...O_carboxyl hydrogen bonds give the overall three‐dimensional structure. The structures reported here further demonstrate the utility of the isonipecotamide cation as a synthon for the generation of stable hydrogen‐bonded structures. The presence of solvent water molecules in these structures is largely responsible for the non‐occurrence of the common hydrogen‐bonded amide–amide dimer, promoting instead various expanded cyclic hydrogen‐bonding motifs.     

A planar cyclic hexamer of water molecules in dichlorido(2,4,6‐tri‐2‐pyridyl‐1,3,5‐triazine)cadmium(II) trihydrate

In the title compound, [CdCl₂(C₁₈H₁₂N₆)]·3H₂O, the Cd atom has a distorted square‐pyramidal coordination geometry. The solvent water molecules are hydrogen bonded to each other to form planar cyclic water hexamers, which, together with other hydrogen bonds, interlink the Cd complex molecules to give one‐dimensional supramolecular ribbons that extend along the [111] direction. The chains are assembled into two‐dimensional layers parallel to (111) by π–π stacking interactions. Furthermore, interlayer π–π stacking interactions and weak C—H...Cl hydrogen bonds complete the formation of a three‐dimensional framework.     

Aripiprazole salts. III. Bis(aripiprazolium) oxalate–oxalic acid (1/1)

The asymmetric unit of the title salt [systematic name: bis(4‐(2,3‐dichlorophenyl)‐1‐{4‐[(2‐oxo‐1,2,3,4‐tetrahydroquinolin‐7‐yl)oxy]butyl}piperazin‐1‐ium) oxalate–oxalic acid (1/1)], 2C₂₃H₂₈Cl₂N₃O₂⁺·C₂O₄²⁻·C₂H₂O₄, consists of one protonated aripiprazole unit (HArip⁺), half an oxalate dianion and half an oxalic acid molecule, the latter two lying on inversion centres. The conformation of the HArip⁺ cation differs from that in other reported salts and resembles more the conformation of neutral Arip units in reported polymorphs and solvates. The intermolecular interaction linking HArip⁺ cations is also similar to those in reported Arip compounds crystallizing in the space group P, with head‐to‐head N—H...O hydrogen bonds generating centrosymmetric dimers, which are further organized into planar ribbons parallel to (01). The oxalate anions and oxalic acid molecules form hydrogen‐bonded chains running along [010], which `pierce' the planar ribbons, interacting with them through a number of stronger N—H...O and weaker C—H...O hydrogen bonds, forming a three‐dimensional network.     

An unusual syn conformation of 5‐formyluracil stabilized by supramolecular interactions

The asymmetric unit of the amino–oxo tautomer of 5‐formyluracil (systematic name: 2,4‐dioxo‐1,2,3,4‐tetrahydropyrimidine‐5‐carbaldehyde), C₅H₄N₂O₃, comprises one planar amino–oxo tautomer, as every atom in the structure lies on a crystallographic mirror plane. At variance with all the previously reported small‐molecule crystal structures containing the 5‐formyluracil residue, the formyl substituent in the title compound exhibits an unusual syn conformation. The molecules are linked into planar sheets parallel to the bc plane by a combination of six N—H...O and C—H...O hydrogen bonds. Four of the hydrogen bonds are utilized to stabilize the formyl group in the syn conformation.     

1,1,3,3‐Tetra­methyl­guanidinium dihydrogen­orthophosphate

In the title compound, C₅H₁₄N₃⁺·H₂PO₄^?, the cation has a central guanidinium fragment with a planar geometry, as expected for a central Csp² atom with a small charge delocalization along the three C—N bonds. The crystal packing is governed by hydrogen bonds so that the phosphate anions are linked head to tail, forming chains running parallel to the c direction. These chains in turn are interconnected by hydrogen bonds to intermediate tetra­methyl­guanidinium cations forming hydrogen‐bonded molecular layers stacked parallel to the bc crystal planes.     

Crystal structure of mixed-ligand silver(I) hydrogen iminodiacetate

The crystal structure of mixed-ligand silver(I) hydrogen iminodiacetate has been studied. The composition of the [Ag₂(C₄H₆NO₄)(NO₃)(H₂O)] _n ([Ag₂(HIda)(NO₃)(H₂O)] _n ) coordination polymer has been refined. The NO₃ and H₂O ligands in the complex form rather weak coordination bonds with the Ag atoms. The system of hydrogen bonds in the structure has been considered. The formation of a chain of hydrogen bonds between the disordered H₂O molecules was established.     

Synthesis and crystal structure of mercury(II) chloride–ferron (7-iodo-8-hydroxyquinoline-5-sulfonic acid) adduct

A mercury(II) chloride adduct of ferron (7-iodo-8-hydroxyquinoline-5-sulfonic acid), [HgCl₂ (C₉H₆INO₄)·H₂O] has been synthesized and characterized by X-ray diffraction analysis and spectroscopic studies. The compound crystallizes in P2₁/c space group, a?=?8.919(3), b?=?23.216(3), c?=?7.714(3)?Å, β?=?95.79(3)°. The coordination geometry around mercury is distorted square planar [(2+2) coordination] with two short Hg–Cl bonds [2.308(2) and 2.309(18)?Å] and two long Hg–O(sulfonate) [2.738(4)?Å] and Hg–O(water) [2.889(4)?Å] bonds. The sulfonic group is deprotonated, the proton having migrated to the quinoline N atom that forms intermolecular hydrogen bonds. The inversion related organic ligands are stacked over one another. The crystal structure is further stabilized by a C–H···O, O–H···O and N–H···O hydrogen bonds.     

A novel azide copper complex: [[Azido{bis[2-(piperidin-1-ylmethyl)pyridine]}copper(II)]perchlorate] hydrate

Synthesis and single crystal X-ray diffraction study were carried for compound {[Cu(C₁₁H₁₆N₄)₂(N₃)](ClO₄)} · H₂O (I). The structure is molecular, and the Cu²⁺ ion is in a five-coordinated compressed trigonal bipyramid environment. Copper ion is bound to five N atoms, in which four N atoms are from two chlelating ligands 2-(piperidin-1-ylmethyl)pyridine and the fifth N donor is from a monodentate azido ligand. The complex cations [Cu(C₁₁H₁₆N₄)₂(N₃)]⁺, the perchlorate anions, and solvent water molecules are further joined into three dimensional supramolecular networks by rich hydrogen bonds including strong O-H…N between solvent water and azide ion and O-H…O between solvent water and perchlorate ion, and weak hydrogen bonds C-H…O, and weak bifurcated hydrogen bonds C-H/C-H…N in which N atom of azide ion serving as bifurcated acceptor and two C-H groups as donors.