Bioinspired Total Synthesis of Complex Nucleoside Antibiotics A201A,A201D and A201E

Herein, bioinspired total syntheses of A201A, A201D, and A201E based on a previously reported biosynthetic pathway are presented. The challenging 1,2-cis-furanoside, a core structure of the A201 family, was obtained by remote 2-quinolinecarbonyl-assisted glycosylation. We accomplished the total synthesis of A201A and A201E based on the critical 1,2-cis-furanoside moiety through late-stage glycosylation without any interference from basic dimethyl adenosine. We also confirmed the absolute configuration of A201E by total synthesis. This modular synthesis strategy enables efficient preparation of A201 family antibiotics, allowing the study of their structure–activity relationships and mode of action. This study satisfies the increasing demand for developing novel antibiotics inspired by the A201 family.     

Bioinspired Total Synthesis of Complex Nucleoside Antibiotics A201A,A201D and A201E

Herein, bioinspired total syntheses of A201A, A201D, and A201E based on a previously reported biosynthetic pathway are presented. The challenging 1,2-cis-furanoside, a core structure of the A201 family, was obtained by remote 2-quinolinecarbonyl-assisted glycosylation. We accomplished the total synthesis of A201A and A201E based on the critical 1,2-cis-furanoside moiety through late-stage glycosylation without any interference from basic dimethyl adenosine. We also confirmed the absolute configuration of A201E by total synthesis. This modular synthesis strategy enables efficient preparation of A201 family antibiotics, allowing the study of their structure–activity relationships and mode of action. This study satisfies the increasing demand for developing novel antibiotics inspired by the A201 family.     

The “Facilitated Transition” hypothesis as an explanation for the gemdialkyl effect

A new technique of searching the conformational space of transition states was used to explore the cause of the rate acceleration in the gem-dialkyl effect in intramolecular cyclization reactions. Several previous hypotheses were discarded and a new hypothesis was advanced based on this new data. This hypothesis, the “Facilitated Transition” hypothesis, states that increased steric hindrance reduces the overall activation energy by facilitating rotation through the transition state. The older “Reactive Rotamer” hypothesis was eliminated by generating all conformations of the starting materials using the and computer programs and demonstrating that no relationship is found between rate increase and a change in the concentration of “reactive rotamers”.     

“Hole-burning spectra”. A new method for obtaining fine structure in absorption spectra of organic molecules

A new method is proposed for obtaining fine structure in broad-band absorption spectra of organic molecules in solid solutions at low temperature. This method is based on the laser burning of a series of narrow gaps in inhomogeneously broadened absorption spectra. A special spectral set-up has been developed for the measurement of the differential spectrum (a “hole-burning spectrum”) of “burnt” and “unburnt” samples. As an example the hole-burning spectrum of Zn-tetraphenylporphine in ethanol has been considered.     

A novel “green” synthesis of starch-capped CdSe nanostructures

This paper reports a “green” facile, room temperature, one-pot synthesis of starch-capped CdSe nanostructures with an obvious quantum confinement effect via a novel non-organometallic method. It is found that by simply tuning the Cd:Se molar ratio, dots and elongated particles of high aspect ratio could be prepared selectively in the presence of the same ligand concentration without any post-treatment. Spherical particles were produced at 1:1 ratio, while elongated particles were produced at 0.5:1 Cd:Se ratio. The X-ray diffraction (XRD) analysis showed that the particles were predominantly of wurtzite structure, with sharp diffraction patterns regardless of their size and shapes. We inferred that the elongated particles are formed by self-reorganisation occurring via adhesion between the spherical nanoparticles as a result of dipole–dipole interactions.     

Comment on “chiral discrimination in spherical tops”

The difference in the interaction energies of two co-rotating, and two counter-rotating, spherical-top molecules is of second order in the rotational constant B, and not first order. Co- and counter-spinning alkali-metal atoms exhibit a similar but numerically much larger “chiral” discrimination.     

“Model-free” kinetic analysis?

All kinetic analyses aim to determine a sufficient number of kinetic parameters, usually at least an apparent Arrhenius activation energy and pre-exponential factor, and a conversion function or kinetic model (making up a ‘kinetic triplet’), so that accurate extrapolations of kinetic behaviour can be made. “Model-free” methods of kinetic analysis postpone the problem of identifying a suitable kinetic model until an estimate of the activation energy has been made. A major reason for doing this is that misidentification of the kinetic model has a marked effect on the values obtained for the Arrhenius parameters in both isothermal and non-isothermal kinetic analyses. Some aspects of this problem are discussed.

The non-parametric kinetics (NPK) method [1 and 2] is a “model-free” method of kinetic analysis that does not seem to have received the attention that it deserves. This is probably because of its mathematical sophistication and the fact that the matrix and non-linear regression calculations involved are not readily automated. The principle of the method appears to be that of “forcing” a set of non-isothermal data into the set which should have been obtained if the experiments had been carried out isothermally. The method deserves wider testing and also raises some interesting aspects of the philosophy behind non-isothermal kinetic analysis.     

An experimental study on the “sequential order” rules in generalized two-dimensional correlation spectroscopy

Following our theoretical analysis on the “sequential order” rules in generalized two-dimensional (2D) correlation spectroscopy (H. Huang, Anal. Chem. 79 (2007) 8281–8292), an experimental study was conducted to test the “sequential order” rules using the FT-NIR data of poly(3-hydroxybutyrate) (PHB)/poly(l-lactic acid) (PLA) blends under uniaxial elongation and parallel polarization. The local sequential order concept proposed for the generalized two-dimensional (2D) correlation spectroscopy is now more clearly stated; “the intensity change at ν1 occurs predominantly before ν2” means that the starting time of the intensity change at ν1 is prior to that at ν2. It is this local sequential order which reflects the real and intuitive sequential order between two events in generalized situations. It has been found that the integrated/overall sequential order results obtained from the 2D correlation analysis may be contradictory to the intuitive local sequential order. In addition, different integrated/overall sequential orders could be obtained by selection of different sampling intervals from a certain set of experimental data, or choosing different number of the contours for the same sampling interval. These new experimental findings are a perfect reinforcement to our previous theoretical study and have further demonstrated the uncertainty of applying the “sequential order” rules in generalized 2D correlation spectroscopy.     

Consumer attitudes to radiation and irradiated potatoes at “radiation fair” in Osaka, Japan

“Radiation Fair” has been held in summer vacation season in August for more than 10 years in Osaka, the largest city of western Japan, for the purpose of public education and information transfer of radiation and radiation-related technology. We distributed questionnaires to the visitors for recent 3 years to inquire their status toward radiation and irradiated products including irradiated potatoes as well as impression toward the displays. According to the survey results, more than 60% of the kids visitors were satisfied with this exhibition as informative, more than half of the older visitors (16 years old and upward) indicated that they recognized the word of “radiation” when they were at elementary school and the most significant sources of this information were school lessons and the mass media. Consumer's image toward radiation seems to shift to more “positive” when correct knowledge about radiation is given. More than half of consumers did not know “irradiated potatoes” but the percentage indicating that irradiated potatoes was definitely hazardous was less than 10%.     

Syntheses of heparin - like pentamers containing “opened” uronic acid moieties

The syntheses of four analogues of pentasaccharide Ia, which corresponds to the minimal AT III binding region of heparin, are presented and the biological activities of these analogues will be discussed. Three of these analogues (i.e. compounds II, III and IV) contain an R-glyceric acid oxymethylene residue (i.e. B in fig.3) instead of -L-iduronic acid and in the other analogue (i.e. compound V) the β-D-glucuronic acid unit has been replaced by an s-glyceric acid oxymethylene residue (i.e. A in fig3). The R and S-glyceric acid oxymethylene residues represent an “opened” iduronic acid unit and an “opened” glucuronic acid unit, respectively, containing the essential carboxylate function in the appropriate configuration. The crucial step in the syntheses of these “opened” uronic acid pentamer analogues, was the preparation of the required glyceric acid oxymethylene residues 8a, 8b and 8c.

Analogues II and III, containing an “opened” iduronic acid moiety, display a significant AT III mediated Xa activity. Compound III contains two extra sulphate groups at unit 2. Removal of the contributing O-sulphate groups at position 3 and 6 of unit 6 of compound II (i.e. compound IV) results in a seven-fold drop in Xa activity. Replacement of the β-D-glucuronic acid unit by an S-glyceric acid oxymethylene residue (i.e. compound V) leads to almost a complete loss of Xa activity, notwithstanding the fact that all the essential and contributing charged groups are present in the molecule.     

Investigation of coherence transfer between “CH3” and “CH2” groups in ethanol with time-resolved multiplex CARS technique

The coherence transfer between stretching vibration modes of C–H bonds in the ethanol is detected by time-resolved multiplex CARS technique and it occurs via “through-bond transfer” pathway. The time scale and velocity of coherence transfer are estimated at 90 fs and 1670 m/s. Moreover, coherence transfer process requires vibrational modes of acceptor and donor are different.     

Vapor liquid equilibrium modeling of alkane systems with Equations of State: “Simplicity versus complexity”

Two types of Equations of State (EoS), which are characterized here as “simple” and “complex” EoS, are evaluated in this study. The “simple” type involves two versions of the Peng–Robinson (PR) EoS: the traditional one that utilizes the experimental critical properties and the acentric factor and the other, referred to as PR-fitted (PR-f), where these parameters are determined by fitting pure compound vapor pressure and saturated liquid volume data. As “complex” EoS in this study are characterized the EoS derived from statistical mechanics considerations and involve the Sanchez–Lacombe (SL) EoS and two versions of the Statistical Associating Fluid Theory (SAFT) EoS, the original and the Perturbed-Chain SAFT (PC-SAFT).

The evaluation of these two types of EoS is carried out with respect to their performance in the prediction and correlation of vapor liquid equilibria in binary and multicomponent mixtures of methane or ethane with alkanes of various degree of asymmetry. It is concluded that for this kind of systems complexity offers no significant advantages over simplicity. Furthermore, the results obtained with the PR-f EoS, especially those for multicomponent systems that are encountered in practice, even with the use of zero binary interaction parameters, indicate that this EoS may become a powerful tool for reservoir fluid phase equilibria modeling.     

“In situ” ESR and UV-visible spectroscopic studies of iron phthalocyanine films deposited on gold electrodes

The electrochemical behaviour of iron phthalocyanine (Fe^IIPc) films, supported on gold substrates, was studied in 3.5 M NaOH solution, using cyclic voltammetry and coupled “in situ” ESR and UV-visible spectroscopic techniques. Two types of electron transfer were observed in the potential range from −0.45 to −1.0 V vs. Hg/HgO. According to the “in situ” spectroscopy investigations, these two processes were assigned respectively to electron transfers involving first the ligand ring, and then the centre iron ion.     

On “vapour---liquid” phase equilibrium in a finite system

A system of a finite number of particles (atoms, molecules) is considered under the condition N. T. V. = const. A “one drop-vapour” approximation is proposed, adapting the Mayer cluster-expansion formalism to describe the heterogeneous equilibrium state of the system. The mean cluster size distribution function obtained is compared with computer simulation results by Rao, Berne and Kalos and shows quite good agreement. The difficulties of applying the Boltzmann entropy hypothesis to the heterogenous (i.e. bistable) state of the system are discussed.     

Single and double asymmetric induction in Diels-Alder cycloadditions with chiral acylnitroso dienophiles

Diels-Alder reaction of the achiral 1-silyloxybutadiene 1a with the chiral acyinitroso dienophile 2a gave cycloadduct 4 in high diastereomeric excess (d.e. > 98 %), a result which is undoubtedly due to the C-2 symmetrical chiral dimethylpyrrolidine inductor. Excellent d.e. was also observed when the (R)-prolinol dienophile 2d was reacted with the chiral diene 1b (d.e. = 96 %), whereas cycloaddition of the (S) enantiomer 2e with 1b gave only poor asymmetric induction (d.e. = 4 %). These two latter examples nicely illustrate the influence of “matched pair” (1b/2d) versus “mismatched pair” (1b/2e) upon double asymmetric induction. All herein reported Diels-Alder cycloadditions were regiospecific.     

Reply to “Comments on the paper entitled ‘The formulation and modelling of the anodic dissolution of zinc through adsorbed intermediates’ ” by C. Cachet et al.

The points raised in the paper entitled “Comments on the paper entitled ‘The formulation and modelling of the anodic dissolution of zinc through adsorbed intermediates”’ have been discussed. It has been shown that, in contrast to the statements in the “Comments”, most of the papers concerning the reaction schemes suggested for the interpretation of the dissolution or deposition of metals, which were considered as a support for the opinion of the Authors of the “Comments”, support the views expressed in our original paper [J. Electroanal. Chem. 583 (2005) 148]. On the other hand, it has been stressed again that the criticism expressed in the original paper refers to dubious conclusions drawn on the basis of transient measurements.     

“In situ” radiation cleaning of underground water contaminated with cyanides - six years of experience

The locality of underground water, contaminated with cyanides, has been successfully cleaned by using the hydraulic barrier method (assembly of pumped wells) since 1986. The average cyanide concentrations in the outflow exceeded 35 m per litre. Contamination had to be eliminated before the discharge into the sewer system. The radiation approach “in situ” i.e. decomposition of cyanides by barrier, was applied and is still being used today. The cyanide concentration was lowered more than one order of magnitude. This process was approved by the Czechoslovak radiation security authorities and further applications of “in Situ” regeneration of underground water contamination is anticipated.     

Pigment identification on “Pietà” of Barletta, example of Renaissance Apulian sculpture: A Raman microscopy study

A study of the original painting layer of the “Pietà” of Barletta, a polychrome statue, important example of Renaissance Apulian sculpture, was performed by μ-Raman spectroscopy. Vermilion was identified in the original layer of the blood drops on Jesus knee. Lazurite was identified as the original blue pigment on Our Lady's veil and lace, currently a yellow ochre-like color. The use of lazurite demonstrates the historical-artistic importance of this polychrome statue, and supports the hypothesis that this artwork was probably commissioned by Our Lady's devotees to itinerant artists inspired by the more precious Vesperbilder model.     

Individuation of characteristic parameters of “glass paste” of Meridional Etruria by the use of scientific methodologies

The individuation of parameters that characterize decorations in “glass paste” of Etruscan jewels in Meridional Etruria area, by the use of scientific methodologies, has the aim to collocate this typology of manufacts in a historical and geographical context and to improve the knowledge of the technology connected with their realization. The term “glass paste” is widely used in humanistic literature to describe different materials, all based on a “glass like” composition, but its definition is lacking or confusing if the term is not referred to a scientific meaning.The glass analysis is difficult owing to the complexity of the elements that compose the various classes of vitreous materials. For this reason the interpretation of the composition table containing the values of the numerous glass elements, induces the use of statistical methods for the elaboration of the results. The multivariate analysis can be a valid tool for an immediate lecture of the common characteristics of the different typologies of vitreous materials.In this work, the application of the Principal Component Analysis (PCA), has been applied for the elaboration of chemical composition data obtained by electronic microanalysis (SEM-EDS) on findings coming from Etruscan archaeological sites of Nepi and Cerveteri, and on pearls of a necklace from Castellani's Collection. Besides, an attempt has been made to compare the chemical elements found in the vitreous materials of the jewelry with the elements of sands from probable sites along the rivers present in the Etruscan sites by following the indications reported by historical fonts.The obtained results furnished information in various directions, either for the characterization of each historical sample analyzed or the validation of the applied statistical methodology for the composition data elaboration, besides it has been possible to contribute in the knowledge of the possible existence of glass production sites in the Meridional Etruria, more specifically for the realization of decoration in glass paste.     

Sterilization of foods with low-energy electrons (“soft-electrons”)

Electrons with an energy of 300 keV or lower were defined as “Soft-electrons”, which showed several advantages over conventional irradiation with gamma-rays or high-energy electrons in decontamination of grains and spices. Energies of electrons necessary to reduce microbial loads to levels lower than 10 CFU/g were 60 keV for brown rice, 75 keV for wheat, 100 keV for white pepper, coriander and basil, 130 keV for buckwheat, 160 keV for rough rice, and 210 keV for black pepper. Electrons with such energies did not significantly influence the quality.