Applications for quantum cascade lasers and detectors in mid-infrared high-resolution heterodyne astronomy

Quantum cascade (QC) structures, for both emitting and detecting mid-infrared radiation, are powerful devices for spectroscopy. QC lasers (QCLs), which have been built for nearly 15 years, already play the leading role in certain wavelength regions. QC detectors (QCDs) are a fairly new development, which has been evolving from the QCL research. In high-resolution heterodyne spectrometers for astronomy, such as the Cologne tuneable heterodyne infrared spectrometer (THIS), QC devices help to open new windows to space as discussed in this paper. We will briefly review the use of QC devices in THIS, show recent results in measuring planetary atmospheric dynamics and give an outlook to astronomical goals for the future. PACS 33.70.Jg     

Prospects for octopus rhodopsin utilization in optical and quantum computation

Visual membranes of octopus, whose main component is the light-sensitive signal transducer octopus rhodopsin (octR), are extremely highly ordered, easily capture single photons, and are sensitive to light polarization, which shows their high potential for use as a QC detector. However, artificial membranes made of octR are neither highly enough ordered nor stable, while the bacterial homolog of octR, bacteriorhodopsin (bR), having the same topology as octR, forms both stable and ordered artificial membranes but lacks the optical properties important for optical QC. In this study, we investigate the structural basis for ordering of the two proteins in membranes in terms of crystallization behavior. We compare the atomic resolution 3D structures of octR and bR and show the possibility for structural bR/octR interconversion by mutagenesis. We also show that the use of (nano)biotechnology can allow (1) high-precision manipulation of the light acceptor, retinal, including converting its surrounding into that of bacterial rhodopsin, the protein already used in optical-computation devices and (2) development of multicomponent and highly regular 2D structures with a high potential for being efficient optical QC detectors. The text was submitted by the authors in English.     

In silico design of peptidic inhibitors targeting estrogen receptor alpha dimer interface

Human estrogen receptor alpha (ERα), which acts as a biomarker and as a therapeutic target for breast cancers, is activated by agonist ligands and co-activator proteins. Selective estrogen receptor modulators (SERM) act as antagonists in specific tissues and tamoxifen, a SERM, has served as a drug for decades for ERα-positive breast cancers. However, the ligand-selective and tissue-specific response of ERα biological activity and the resistance to tamoxifen treatment in advanced stages of ERα-positive breast cancers underscores the need to find a ligand-independent inhibitor for ERα. Here we present a ligand-independent approach of inhibiting ERα transactivation targeting its dimerization-a key process of ERα biological activity. Using in silico techniques, we first elucidated the hydrogen bond interactions involved in dimerization and identified three interfacial sequence motifs, where sequence I (DKITD) and sequence II (QQQHQRLAQ) of one monomer form hydrogen bonding with sequence II and sequence I of the second monomer, respectively, and sequence III (LSHIRHMSNK) hydrogen bonds with the same from the second monomer. Studying the structural stability and the binding affinity of the peptides derived from these sequence motifs, we found that an extended and ARG mutated version (LQQQHQQLAQ) of sequence II can act as a suitable template for designing peptidic inhibitors. It provides additional structural stability and interacts more strongly with ERα dimer interface groove formed by helices 9 and 10/11 and prevent ERα dimerization. Our result provides a novel therapeutic designing pipeline for ligand-independent inhibition of ERα.     

Kinetics and Thermodynamics of Glycans and Glycoproteins Binding to Holothuria scabra Lectin: A Fluorescence and Surface Plasmon Resonance Spectroscopic Study

Holothuria scabra produces a monomeric lectin (HSL) of 182 kDa. HSL showed strong antibacterial activity and induced bacterial agglutination under in vitro conditions, indicating its role in animals’ innate immune responses. Very few lectins have been reported from echinoderms and none of these lectins have been explored in detail for their sugar-binding kinetics. Affinity, kinetics and thermodynamic analysis of glycans and glycoproteins binding to HSL were studied by fluorescence and surface plasmon resonance spectroscopy. Lectin binds with higher affinity to O-linked than N-linked asialo glycans, and the affinities were relatively higher than that for sialated glycans and glycoproteins. T-antigen α-methyl glycoside was the most potent ligand having the highest affinity (Ka 8.32 ×10⁷ M^?1). Thermodynamic and kinetic analysis indicated that the binding of galactosyl Tn-antigen and asialo glycans is accompanied by an enthalpic contribution in addition to higher association rate coupled by low activation energy for the association process. Presence of sialic acid or protein matrix inhibits binding. Higher affinity of HSL for O-glycans than N-glycans had biological implications; since HSL specifically recognizes bacteria, which have mucin or O-glycan cognate on their cell surfaces and play a major role in animal innate immunity. Since, HSL had higher affinity to T-antigen, makes it a useful tool for cancer diagnostic purpose.     

Time‐resolved ultrafast carrier dynamics in as‐grown nanocrystalline silicon films: the effect of film thickness and grain boundaries

In this letter, we have studied transient photoinduced absorption in as‐grown nanocrystalline silicon films with thickness varied from 5 to 30 nm. Effects of quantum confinement (QC) in z ‐direction and grain boundary distortions alter the carrier dynamics of these films considerably. Based on the determination of critical points in the first Brillouin zone of the band structure of materials, we have time‐resolved the relaxation times of surface‐related states and indirect valleys. When decreasing the film thickness down to the QC limit (∼10 nm) new ultrafast relaxation mechanisms start to play a dominant role in carrier dynamics due to the topological disordering of these ultrathin films. These relaxation mechanisms seem to be related with the traping/de‐traping of the excited carriers prior to recombination. (© 2008 WILEY‐VCH Verlag GmbH & Co. KGaA, Weinheim)     

Quantum quasi-cyclic low-density parity-check error-correcting codes

Due to the fault of the author(s) of the article entitled “Quantum quasi-cyclic low-density parity-check error-correcting codes”, published inChinese PhysicsB, 2009, Vol. 18, Issue 10, pp 4154--4160, has been found to partly copy from the articlearXiv:quant-ph/0701020v2on the arXiv preprint. So the above article inChinese PhysicsB has been withdrawn from the publication. [2 February 2010]     

Precision measurement of the quadrupole coupling and chemical shift tensors of the deuterons in alpha-calcium formate.

Using calcium formate, alpha-Ca(DCOO)2, as a test sample, we explore how precisely deuteron quadrupole coupling (QC) and chemical shift (CS) tensors Q and sigma can currently be measured. The error limits, +/-0.09 kHz for the components of Q and +/-0.06 ppm for those of sigma, are at least three times lower than in any comparable previous experiment. The concept of a new receiver is described. A signal/noise ratio of 100 is realized in single-shot FT spectra. The measurement strategies and a detailed error analysis are presented. The precision of the measurement of Q is limited by the uncertainty of the rotation angles of the sample and that of sigma by the uncertainty of the phase correction parameters needed in FT spectroscopy. With a 4-sigma confidence, it is demonstrated for the first time that the unique QC tensor direction of a deuteron attached to a carbon deviates from the bond direction; the deviation found is (1.2+/-0.3 degrees ). Evidence is provided for intermolecular QC contributions. In terms of Q, their size is roughly 4 kHz. The deuteron QC tensors in alpha-Ca(DCOO)2 (two independent deuteron sites) are remarkable in three respects. For deuterons attached to sp2 carbons, first, the asymmetry factors eta and, second, the quadrupole coupling constants C(Q), are unusually small, eta1=0.018, eta2=0.011, and C(Q1)=(151.27+/-0.06) kHz, C(Q2)=(154.09+/-0.06) kHz. Third, the principal direction associated with the largest negative QC tensor component lies in and not, as usual, perpendicular to the molecular plane. A rationalization is provided for these observations. The CS tensors obtained are in quantitative agreement with the results of an earlier, less precise, line-narrowing multiple-pulse study of alpha-Ca(HCOO)2. The assignment proposed in that work is confirmed. Finally we argue that a further 10-fold increase of the measurement precision of deuteron QC tensors, and a 2-fold increase of that of CS tensors, should be possible. We indicate the measures that need to be taken.     

Increasing Quantum Correlations Based on Measurement-Induced Disturbance via a Swapping Procedure with Two-Qubit Mixed States

In this paper, quantum correlation (QC) swapping for certain separable two-qubit mixed states is treated. A QC quantifier, measurement-induced disturbance (MID) (Luo in Phys Rev A 77:022301, 2008), is employed to characterize and quantify QCs in the relevant states. Properties of all QCs in the swapping process are revealed. Particularly, it is found that MID can be increased through QC swapping for certain separable two-qubit mixed states.     

Investigations of low-amplitude radio frequency pulses at and away from rotary resonance conditions for I = 5/2 nuclei

Additional experimental evidence of rotary resonance effects for multiple-quantum coherence conversion in a spin-5/2 system is presented. Two-dimensional plots of the relative efficiency of MQ excitation and conversion are given as a function of radio frequency (rf) amplitude and pulse width. Data are presented for the excitation of five-quantum coherence (5QC), as well as for 5QC to three-quantum coherence (3QC) conversion, 5QC to IQC (the central transition coherence) conversion, and 3QC to IQC conversion. A two-fold increase in the signal-to-noise ratio is achieved by substituting low amplitude rf pulses in place of hard rf pulses for 5QC excitation and 5QC to 3QC conversion in a mixed multiple-quantum magic angle spinning (MAS) (MMQMAS) experiment. The anisotropic line shape for the low-amplitude rf pulse version of the MMQMAS experiment was observed to be distorted from the MAS line shape. The cause and implications of the distortion are discussed.     

Reaction Rate of Small Diffusing Molecules on a Cylindrical Membrane

Biomembranes consist of a lipid bi-layer into which proteins are embedded to fulfill numerous tasks in localized regions of the membrane. Often, the proteins have to reach these regions by simple diffusion. Motivated by the observation that IP₃ receptor channels (IP₃R) form clusters on the surface of the endoplasmic reticulum (ER) during ATP-induced calcium release, the reaction rate of small diffusing molecules on a cylindrical membrane is calculated based on the Smoluchowski approach. In this way, the cylindrical topology of the tubular ER is explicitly taken into account. The problem can be reduced to the solution of the diffusion equation on a finite cylindrical surface containing a small absorbing hole. The solution is constructed by matching appropriate ‘inner’ and ‘outer’ asymptotic expansions. The asymptotic results are compared with those from numerical simulations and excellent agreement is obtained. For realistic parameter sets, we find reaction rates in the range of experimentally measured clustering rates of IP₃R. This supports the idea that clusters are formed by a purely diffusion limited process.     

One phonon-assisted electron Raman scattering in a wurtzite cylindrical quantum well wire

We report the electron resonant Raman scattering (ERRS) process related to the longitudinal optical (LO), interface optical (IO) and quasi-confined (QC) phonons in a cylindrical GaN-AlN quantum well wire (QWW). We present the differential cross-section (DCS) and study the selection rules. Results reveal that the emitted photon frequency decreases with increasing the radius because of the size-selective Raman scattering effect and the built-in electric field. The contribution to the DCS mainly stems from the GaN-type LO (LO1), QC and IO phonons when the wire is thin, but the LO1 and QC phonons are dominant for the thick wire.     

An efficient three-dimensional adaptive quasicontinuum method using variable-node elements

A new quasicontinuum (QC) implementation using the so-called “variable-node finite elements” is reported in this work. Tetrahedral elements, which have been exclusively utilized for the conventional QC are replaced by hexahedral elements in conjunction with the so-called variable-node elements. This enables an effective adaptive mesh refinement in QC, leading to fast and efficient simulations compared with the conventional QC. To confirm the solution accuracy, comparison is made for a nanoindentation problem with a molecular dynamics simulation as well as a molecular mechanics solution. Further examples of nanoindentation are shown and discussed to demonstrate the effectiveness of the present scheme.     

Signature of quantum criticality in the density profiles of cold atom systems

In recent years, there has been considerable experimental effort using cold atoms to study strongly correlated many-body systems. One class of phenomena of particular interest is quantum critical (QC) phenomena. While prevalent in many materials, these phenomena pose notoriously difficult theoretical problems due to the vanishing of energy scales in the QC region. So far, there are no systematic ways to deduce the QC behavior of bulk systems from the data of trapped atomic gases. Here, we present a simple algorithm to use the experimental density profile to determine the T=0 phase boundary of bulk systems, as well as the scaling functions in the QC regime. We also present another scheme for removing finite-size effects of the trap. We demonstrate the validity of our schemes using exactly soluble models.     

Application of quantum cascade lasers to trace gas analysis

Quantum cascade (QC) lasers are virtually ideal mid-infrared sources for trace gas monitoring. They can be fabricated to operate at any of a very wide range of wavelengths from ∼ 3 μm to ∼ 24 μm. Seizing the opportunity presented by mid-infrared QC lasers, several groups world-wide are actively applying them to trace gas sensing. Real world applications include environmental monitoring, industrial process control and biomedical diagnostics. In our laboratory we have explored the use of several methods for carrying out absorption spectroscopy with these sources, which include multipass absorption spectroscopy, cavity ring down spectroscopy (CRDS), integrated cavity output spectroscopy (ICOS), and quartz-enhanced photoacoustic spectroscopy (QEPAS). PACS 42.62.Fi; 42.62.Be; 07.88.+y; 33.20.Ea     

Theoretical estimates of optimal parameters for quantum cascade lasers

The quantum cascade (QC) laser is a new light source which is based on one type of carrier (electrons) making transitions between energy levels created by quantum confinement. In this paper, focusing on the working conditions which a QC laser should satisfy, we have discussed the subband lifespans in QC laser active regions. The results show that the population inversion condition can be achieved by resonant tunneling associated with an optical phonon, and this population inversion can be facilitated by the short escaping time of electrons from one active region to the neighboring active region. Our calculations also show that the lifespans of levels 3 and 2 are dominated by the phonon scattering time, and the escaping time from one active region to the next active region is determined by the thickness of exit barrier and the proper design of the miniband between the active regions.     

Characterization of keyhole limpet hemocyanin (KLH) glycans sharing a carbohydrate epitope with Schistosoma mansoni glycoconjugates

Keyhole limpet hemocyanin (KLH) is known to share carbohydrate epitopes with Schistosoma mansoni. In order to define the structural basis for the observed serological cross-reactivity, KLH glycans were released either by enzyme treatment or by hydrazinolysis and probed with a rabbit hyperimmune serum directed against S. mansoni egg antigen. Both major, non-reacting oligosaccharide species as well as the minor compounds recognized were isolated by two-dimensional high performance liquid chromatography and in part by lectin affinity chromatography, and characterized by mass spectrometry. The results revealed that KLH carries predominantly high mannose-type glycans as well as short sugar chains. As a characteristic feature, a number of the latter glycans contained a Gal(beta1-6)Man-unit, which has not yet been found in glycoprotein-N-glycans. Oligosaccharides cross-reacting with schistosomal glycans comprised a terminal Fuc(alpha1-3)GalNAc-motif, which appears to represent the main carbohydrate epitope mediating cross-reactivity of KLH with glycoconjugates from S. mansoni.     

Polar oscillation and dispersion properties of quasi-confined optical phonon modes in a wurtzite GaN/AlxGa1−xN nanowire

Under the dielectric continuum model and Loudon’s uniaxial crystal model, the properties of the quasi-confined (QC) optical phonon dispersions and the electron-QC phonons coupling functions in a cylindrical wurtzite nanowire are deduced via the method of electrostatic potential expanding. Numerical computations on a GaN/Al_0.15Ga_0.85N wurtzite nanowire are performed. Results reveal that, for a definite axial wave number k_z and a certain azimuthal quantum number m, there are infinite branches of QC modes. The frequencies of these QC modes fall into two regions, i.e. a high frequency region and a low frequency region. The dispersion of the QC modes are quite apparant only when k_z and m are small. The lower-order QC modes in the higher frequency region play more important role in the electron-QC phonon interactions. Moreover, for the higher-order QC modes in the high frequency region, the electrostatic potentials “escaping” out of the well-layer material nearly could be ignored.     

Protecting Qutrit Quantum Coherence

High dimensional quantum system plays a vital role in quantum information processing. However, decoherence induced by the coupling between quantum system and environment often destroys quantum resource. In this paper, we study the dynamics and protection of qutrit quantum coherence (QC) under amplitude damping (AD) decoherence. We propose two schemes to protect QC. We find that the first scheme can not always protect QC and the second scheme has prominent advantage over the first scheme. In addition, better protection requires lower success probability (SP).     

Effect of 1-Aminoanthracene (1-AMA) Binding on the Structure of Three Lipocalin Proteins,the Dimeric β Lactoglobulin,the Dimeric Odorant Binding Protein and the Monomeric α<Subscript>1</Subscript>-Acid Glycoprotein. Fluorescence Spectra and Lifetimes Studies

We studied effect of 1-aminoanthracene (1-AMA) binding on the structures of dimeric β lactoglobulin, dimeric odorant binding protein (OBP) and monomeric α₁-acid glycoprotein (lipocalin family proteins) by monitoring fluorescence excitation spectra and measuring fluorescence lifetimes of the tryptophan residues of the proteins. Results show that binding of 1-AMA to β lactoglobulin and OBP modifies their conformation even at low probe concentration compared to that of the proteins. Structural modification induces a red shift of the fluorescence excitation spectra maximum of tryptophan residues accompanied with an increase of the third fluorescence lifetime and a decrease of its pre-exponential factor. These effects were not observed for α₁-acid glycoprotein, probably as the result of carbohydrate presence. These data raise doubts concerning use of 1-AMA as a probe to study biological properties of β lactoglobulin and OBP.