Selective DNA-mediated assembly of gold nanoparticles on electroded substrates

Motivated by the technological possibilities of electronics and sensors based on gold nanoparticles (Au NPs), we investigate the selective assembly of such NPs on electrodes via DNA hybridization. Protocols are demonstrated for maximizing selectivity and coverage using 15mers as the active binding agents. Detailed studies of the dependences on time, ionic strength, and temperature are used to understand the underlying mechanisms and their limits. Under optimized conditions, coverage of Au NPs on Au electrodes patterned on silicon dioxide (SiO2) substrates was found to be approximately 25-35%. In all cases, Au NPs functionalized with non-complementary DNA show no attachment and essentially no nonspecific adsorption is observed by any Au NPs on the SiO2 surfaces of the patterned substrates. DNA-guided assembly of multilayers of NPs was also demonstrated and, as expected, found to further increase the coverage, with three deposition cycles resulting in a surface coverage of approximately 60%.     

A highly efficient and versatile microchip capillary electrophoresis method for DNA separation using gold nanoparticle as a tag

A highly efficient and versatile method for DNA separation using Au nanoparticles (Au NPs) as a tag based on microchip capillary electrophoresis (MCE) was developed. The thiol-modified DNA-binding Au NPs were utilized as a tag. Target DNA was sandwiched between Au NPs and probe DNA labeled with horseradish peroxidase (HRP). In electrophoresis separation, the difference in electrophoretic mobility between free probe and probe-target complex was magnified by Au NPs, which enabled the resulting mixture to be separated with high efficiency by microchip capillary electrophoresis. Horseradish peroxidase was used as a catalytic label to achieve sensitive electrochemical DNA detection via fast catalytic reactions. With this protocol, 27-mer DNA fragments with different sequences were separated with high speed and high resolution. The proposed method was critical to achieve improved DNA separations in hybridization analyses.     

Fluorescence resonance energy transfer in CdSe/ZnS-DNA conjugates: probing hybridization and DNA cleavage

Nucleic-acid-functionalized CdSe/ZnS quantum dots (QDs) were hybridized with the complementary Texas-Red-functionalized nucleic acid. The hybridization was monitored by following the fluorescence resonance energy transfer from the QDs to the dye units. Treatment of the QD/dye DNA duplex structure with DNase I resulted in the cleavage of the DNA and the recovery of the fluorescence properties of the CdSe/ZnS QDs. The luminescence properties of the QDs were, however, only partially recovered due to the nonspecific adsorption of the dye onto the QDs. Similarly, nucleic-acid-functionalized Au nanoparticles (Au NPs) were hybridized with the complementary Texas-Red-labeled nucleic acid. The hybridization was followed by the fluorescence quenching of the dye by the Au NPs. Treatment of the Au NP/dye DNA duplex with DNase I resulted in the cleavage of the DNA and the partial recovery of the dye fluorescence. The incomplete recovery of the dye fluorescence originated from the nonspecific binding of the dye units to the Au NPs. The nonspecific binding of the dye to the CdSe/ZnS QDs and the Au NPs is attributed to nonprotected surface vacancies in the two systems.     

Control over surface DNA density on gold nanoparticles allows selective and sensitive detection of mercury(II)

We have developed a new highly selective and sensitive technique for the detection of Hg(2+) using DNA-functionalized gold nanoparticles (Au NPs) and OliGreen. This system is the first that allows the detection of Hg(2+) based on the release of DNA molecules, induced by conformational changes on Au NP surfaces, and its sensitivity is highly dependent upon surface DNA density. When Hg(2+) ions interact with the thymidine units of the DNA molecules bound to the Au NPs through Au-S bonds, the conformations of these DNA derivatives change from linear to hairpin structures, causing the release of some of the DNA molecules from the surface of the Au NPs into the bulk solution to react with OliGreen. The fluorescence of OliGreen-DNA complexes increased with increasing concentration of Hg(2+), and Hg(2+) could be detected at concentrations as low as 25 nM. A linear correlation existed between the fluorescence intensity and the concentration of Hg(2+) over the range 0.05-2.5 microM (R(2) = 0.98). This simple and cost-effective probe was applied to determine the spiked Hg(2+) in the pond samples; the recoveries (96-102%) suggested low matrix interference and high sensitivity.     

Substantial Influence of Temperature on Anchoring of Gold‐Nanoparticle Monolayer for Performance of DNA Biosensors

This paper presents a way of modification of crystalline gold surface with a high quality layer of gold nanoparticles (Au NPs) via self‐assembled dithiol. The application of additional Au NPs monolayer prepared at various temperatures was tested with three types of biosensors previously described in the literature. The examined DNA biosensors differed by the detection method and the way of the immobilization of DNA probe at the modified gold electrode surface. For the immobilization of DNA probe in the sensing layer either the formation of SAM or the affinity binding (biotin – sterptavidin) or covalent attachment were used. The necessary condition of successful preparation of a perfect such monolayer is the preparation temperature of 4 °C. The preparation of Au NPs layers at higher than 4 °C temperatures leads to poor repeatability and unsatisfactory precision of the measurements. The application of the perfect Au monolayer lowers the detection limit (circa by 10 to 100 times) for all tested DNA biosensors.     

Amplified surface plasmon resonance based DNA biosensors, aptasensors, and Hg2+ sensors using hemin/G-quadruplexes and Au nanoparticles

Thiolated nucleic acid hairpin nanostructures that include in their stem region a "caged" G-quadruplex sequence, and in their single-stranded loop region oligonucleotide recognition sequences for DNA, adenosine monophosphate (AMP), or Hg(2+) ions were linked to bare Au surfaces or to Au nanoparticles (NPs) linked to Au surfaces. The opening of the hairpin nanostructures associated with the bare Au surface by the complementary target DNA, AMP substrate, or Hg(2+) ions, in the presence of hemin, led to the self-assembly of hemin/G-quadruplexes on the surface. The resulting dielectric changes on the surface exhibited shifts in the surface plasmon resonance (SPR) spectra, thus providing a readout signal for the recognition events. A similar opening of the hairpin nanostructures, immobilized on the Au NPs associated with the Au surface, by the DNA, AMP, or Hg(2+) led to an ultrasensitive SPR-amplified detection of the respective analytes. The amplification originated from the coupling between the localized surface plasmon associated with the NPs and the surface plasmon wave, an effect that cooperatively amplifies the SPR shifts that result from the formation of the hemin/G-quadruplexes. The different sensing platforms reveal impressive sensitivities and selectivities toward the target analytes.     

Spectrophotometric and physicochemical investigations of Congo,alizarin red dyes and BSA interactions with Au,Ag and Au/Ag mix nanoparticles,and their antimicrobial activities

Individual and mix metal nanoparticles of Ag and Au have been prepared by the reducing method where citrate was used as reducing/stabilizing agent. The prepared NPs were characterized with UV/Visible and transmission electron microscopic (TEM) tools. The characteristic peak in UV/Visible at 525, 444 and 531 nm for Au, Ag and Ag/Au mix NPs respectively, gave primary confirmation of prepared NPs. TEM analysis showed the size of nanoparticles as 44.04, 19.78 and 30.93 nm for Ag, Au and Ag/Au mix NPs respectively. Congo and alizarin red dye interactions studies have been performed with prepared NPs to see the removal of the pollutants from water. Congo dye has shown weaker interaction as compared to alizarin due to structural symmetry. Amongst all, the AgNPs have shown maximum 67% and 75% interactions with Congo red and alizarin respectively due to high negative charges on the surface. The Au, Ag and Au/Ag mix NPs have shown stronger interaction with bovine serum albumin (BSA) protein up to 51, 59, 55% respectively, estimated through UV/Vis and physicochemical analysis. The biological evaluations of the prepared NPs have shown their antibacterial activity against Gram + ve and –ve species showing up to 9 cm zone of inhibition. The BSA interaction and antibacterial activity of NPs reveal the importance of NPs in medicinal field.     

Wavelength Dependence of the Fluorescence Quenching Efficiency of Nearby Dyes by Gold Nanoclusters and Nanoparticles: The Roles of Spectral Overlap and Particle Size

The efficiency of the glutathione monolayer-protected gold nanocluster (NC) Au(25) (1.2 nm metal core diameter (d)) in quenching the emission of dyes intercalated into DNA is compared to that of 2 and 4 nm gold nanoparticles (NPs). In all cases, the DNA/dye moieties and the gold particles are not covalently attached but rather form non-covalent ground state complexes. Under these conditions, steady-state measurements reveal that the quenching efficiency of Au(25) is a factor of 10 lower than that of plasmonic 4 nm gold NPs but comparable to that of 2 nm particles which do not show a distinct plasmon band. Nonetheless, significant emission quenching is observed even at very low (nM) concentrations of Au(25). The quenching efficiency of the 4 nm NPs is significantly higher for dyes emitting near the wavelength of the plasmon peak whereas that of the 2 nm gold NPs is well described by the nano-surface energy transfer (NSET) model proposed by the Strouse group (J. Am. Chem. Soc. 127, 3115 2005). Interestingly, for Au(25) the maximum quenching efficiency occurs for dyes emitting in the same wavelength range as that of the 2 and 4 nm NPs (490-560 nm), where it shows no discrete absorption features, rather than for wavelengths coincident with its HOMO-LUMO, intra-band or inter-band transitions. The fluorescence quenching properties of Au(25) NCs are therefore found to be distinct from those of larger NCs and NPs but do not appear to conform to theoretical predictions advanced thus far.     

Probing hydroxyl radicals and their imaging in living cells by use of FAM-DNA-Au nanoparticles

The incorporation of gold nanoparticles (Au NPs) as quencher modules in fluorescent probes for DNA damage caused by intracellular hydroxyl radicals (HO*) is reported. Au NPs of 15 nm diameter were decorated with DNA oligomers terminating in thiol functions in their 3' positions and possessing 5' fluorophore modifications. The Au NPs, which have high extinction coefficients, functioned as excellent fluorescent quenchers in the fluorophore-Au NP composites. FRET is switched off as a factor of HO*-induced strand breakage in the single-stranded DNAs, restoring the fluorescence of the quenched fluorophores, which can be followed by spectrofluorimetry. In vitro assays with HO*-generating Fenton reagent demonstrated increases in fluorescence intensity with a linear range from 8.0 nM to 1.0 microM and a detection limit as low as 2.4 nM. Confocal microscopic imaging of macrophages and HepG2 revealed that the probe is cell-permeable and intracellular HO*-responsive. The unique combination of good selectivity and high sensitivity establishes the potential value of the probe for facilitating investigations of HO*-mediated cellular homeostasis and injury.     

Surface-plasmon-enhanced band emission of ZnO nanoflowers decorated with Au nanoparticles

A simple strategy was used to enhance band emission through the transfer of defect emission from ZnO to Au by using the energy match between the defect emission of ZnO and the surface plasmon absorbance of Au NPs through decorating the surface of ZnO nanoflowers with Au nanoparticles (Au NPs). The ZnO nanostructure, which was comprised of six nanorods that were attached on one side in a flower-like fashion, was synthesized by using a hydrothermal method. The temperature-dependent morphology and detailed growth mechanism were studied. The influence of the density of the Au NPs that were deposited onto the surface of ZnO on photoluminescence was investigated to optimize the configuration of the ZnO/Au system in terms of the maximum band emission. The sequential transfer of defect energy from ZnO to Au and electron transfer from excited Au to ZnO was proposed as a possible mechanism for the enhanced band emission.     

Surface‐Plasmon‐Enhanced Band Emission of ZnO Nanoflowers Decorated with Au Nanoparticles

A simple strategy was used to enhance band emission through the transfer of defect emission from ZnO to Au by using the energy match between the defect emission of ZnO and the surface plasmon absorbance of Au NPs through decorating the surface of ZnO nanoflowers with Au nanoparticles (Au NPs). The ZnO nanostructure, which was comprised of six nanorods that were attached on one side in a flower‐like fashion, was synthesized by using a hydrothermal method. The temperature‐dependent morphology and detailed growth mechanism were studied. The influence of the density of the Au NPs that were deposited onto the surface of ZnO on photoluminescence was investigated to optimize the configuration of the ZnO/Au system in terms of the maximum band emission. The sequential transfer of defect energy from ZnO to Au and electron transfer from excited Au to ZnO was proposed as a possible mechanism for the enhanced band emission.     

盐诱导金纳米粒子自组装和沉降制备具有宽波段吸收特性的黑金

通过向金溶胶中加入无机盐诱导金纳米粒子自组装,并自然沉降金纳米粒子组装体得到黑金薄膜.研究结果表明,该黑金薄膜在400~1600 nm的宽带范围内表现出很强的吸收能力（>80%）,在400~800 nm的可见范围内能达到94%,表现出高光热转换能力和宽波段的高表面增强拉曼散射（SERS）活性.     

Physical and Chemical Consequences of Size-Reduction of Gold: Bioresponse and Biodistribution

The article is dealing with the dependency of physical and chemical properties on size and coating of gold nanoparticles (Au NPs) and their potential in medicine. Full-shell clusters of the type Au₅₅(PR₃)₁₂Cl₆ are in the focal point due to their special properties. They act as quantum dots at room temperature and their stability is based on the perfect cuboctahedral structure. The bioresponse of the 1.4 nm Au₅₅ clusters is, compared with smaller and larger Au NPs, very special, indicated by high cytotoxicity. It is caused by oxidative stress in cells accompanied by direct interactions with DNA. Biodistribution in Wistar–Kyoto rats differs also characteristically from larger Au NPs. Larger Au NPs, intravenously injected, assemble almost quantitatively in the liver, whereas Au₅₅ clusters distribute over numerous other organs. All comparisons have been carried out by Au species with identical ligand molecules in order to have the same conditions concerning surface behaviour.     

Alkanetelluroxide-protected gold nanoparticles

The synthesis and characterization of the first air-stable tellurium-containing ligand-protected gold nanoparticles (NPs) are reported. Although the synthesis largely followed the well-known Brust two-phase approach, the starting ligand was dioctyl ditelluride rather than alkanetellurol, which is an analogue of the widely used alkanethiol. Dioctyl ditelluride was used because alkanetellurol is unstable. The 1H and 13C NMR spectra, as well as infrared spectra (IR) of the formed Au NPs, indicated that the Te-Te bond in the starting ligand was broken but the octyl group was intact. This was further corroborated by the solid-state 125Te NMR spectrum that displayed a very broad and significantly downfield-shifted peak, indicating that tellurium was directly bound to the Au core. Furthermore, the O 1s and Te 3d XPS spectra of the Au NPs indicated that the capping ligands were octanetelluroxide. An average particle size of 2.7 nm diameter as measured by transmission electron microscopy (TEM) corresponded to an Au607 core. A two-step weight loss of approximately 22.2% in total was observed in the thermogravimetric analysis, which indicated about 53% ligand monolayer coverage (i.e., Au607(Te(=O)C8H17)133). Additionally, dioctyl ditelluride demonstrated an intriguing reductive power that led to a more sophisticated chemistry of forming the air-stable octanetelluroxide-protected gold NPs. It has been found that (1) when the ratio of Au to Te was about 1.5 a colorless intermediate state similar to Au(I)-SR (the intermediate state widely accepted in the synthesis of thiolate-protected Au NPs) could be obtained and (2) this kind of intermediate state played a key role in the formation of stable Au NPs.     

A sensitive fluorimetric biosensor for detection of DNA hybridization based on Fe/Au core/shell nanoparticles

In this study, we reported a sensitive fluorescent biosensor for detection of DNA hybridization based on Fe/Au core/shell (Fe@Au) nanoparticles (NPs). First, Fe@Au NPs were synthesized using a reverse micelle method, with gold as the shell and iron as the core. The nanoparticle size was confirmed by transmission electron microscopy (TEM). Scanning electron microscopy (SEM) was performed in order to elucidate the morphology of the Fe@Au NPs. Then probe DNA with -SH at the 5'-phosphate end was covalently immobilized onto the surface of the Fe@Au NPs. The DNA hybridization event can be detected by a fluorescent method and methylene blue (MB) as the fluorescent probe. The decline of the fluorescence intensity of MB (ΔF) was linear with the concentration of the complementary DNA from 3.0 × 10(-13) to 1.0 × 10(-9) M with a detection limit of 1.0 × 10(-13) M (S/N = 3). In addition, this approach of DNA detection exhibited excellent selectivity, even for single-mismatched DNA detection.     

基于金银纳米立方体构建高灵敏CA-153传感器的研究

癌抗原-153(CA-153)是乳腺癌最重要的特异性标志物。利用CA-153与其抗体之间的特异性识别性构建"三明治"夹心结构的免疫传感器,在玻碳电极上修饰金纳米/氧化石墨烯复合材料,通过纳米金和CA-153抗体之间的吸附作用,将抗体固定于电极表面,以牛血清白蛋白封闭非特异性吸附位点。金银(AuAg)纳米立方体标记CA-153二抗,标记的AuAg纳米立方体催化过氧化氢氧化电子媒介体硫堇,采用差分脉冲伏安法检测CA-153的电化学信号。在最优条件下,此传感器的响应电流与CA-153浓度的对数在2.0×10~(-5)~100 U/mL范围内呈良好的线性关系,检出限(S/N=3)为7.0×10~(-6)U/mL。对实际血清样品进行加标回收实验,回收率为92.2%~110.2%,相对标准偏差不大于8.7%。     

金纳米粒子比色测定细胞色素c构象变化

金纳米粒子(AuNPs)的颜色会随着细胞色素c(Cytc)构象变化而发生较大的变化,作者在改变原测定流程的基础上利用这种有规律的变化研究和测定了H+和L-半胱氨酸(L-Cys)对Cytc的构象变化.实验中分别加入pH=1-13的Cytc,可以使AuNPs显示青、蓝、紫、红等明显不同的颜色,从而可以利用AuNPs比色快速测定不同pH值的Cytc构象变化.在pH=7时,当附加L-Cys浓度从低浓度变化到高浓度时,AuNPs颜色逐渐从紫色变化到蓝色、青色,从而实现利用AuNPs比色测定由L-Cys所引起Cytc构象变化.圆二色(CD)光谱证实了pH=1-13和不同浓度L-Cys下的Cytc构象变化.借助紫外-可见吸收光谱和扫描电子显微镜(SEM)进一步明确了加入Cytc后AuNPs的不同聚集状态与其颜色变化的关系.     

Electrochemically controlled assembly and logic gates operations of gold nanoparticle arrays

The reversible assembly of β-cyclodextrin-functionalized gold NPs (β-CD Au NPs) is studied on mixed self-assembled monolayer (SAM), formed by coadsorption of redox-active ferrocenylalkylthiols and n-alkanethiols on gold surfaces. The surface coverage and spatial distribution of the β-CD Au NPs monolayer on the gold substrate are tuned by the self-assembled monolayer composition. The binding and release of β-CD Au NPs to and from the SAMs modified surface are followed by surface plasmon resonance (SPR) spectroscopy. The redox state of the tethered ferrocene in binary SAMs controls the formation of the supramolecular interaction between ferrocene moieties and β-CD-capped Au NPs. As a result, the potential-induced uptake and release of β-CD Au NPs to and from the surface is accomplished. The competitive binding of β-CD Au NPs with guest molecules in solution shifted the equilibrium of the complexation-decomplexation process involving the supramolecular interaction with the Fc-functionalized surface. The dual controlled assembly of β-CD Au NPs on the surface enabled to use two stimuli as inputs for logic gate activation; the coupling between the localized surface plasmon, associated with the Au NP, and the surface plasmon wave, associated with the thin metal surface, is implemented as readout signal for "AND" logic gate operations.     

QCM and EC-SPR Studies of Cytochrome cSelf-assembled on Au Electrode and Enhancement of SPR Signal by Au Nanoparticles

Quartz crystal microbalance(QCM) and cyclic voltammetry(CV) were used to characterize the monolayer of cytochrome c(Cyt c), which was adsorbed on gold film modified with alkanethiol mixed monolayer. A direct comparison of protein surface coverages calculated from QCM and cyclic voltammetric measurements illustrates that the ratio of the electroactive Cyt c to the total surface-confined Cyt cis 34%, which suggests that the orientation is a main factor affecting the electroactivity of Cyt c. Moreover, surface plasmon resonance(SPR) measurement combined with CV “in situ” was used to investigate the conformational change of Cyt c in the redox process. Besides, Au nanoparticles(Au NPs) were adsorbed on the surface of Cyt c. The result indicates that Au NPs promote electron transfer between Cyt c and the gold electrode, and SPR result suggests Au NPs enhance SPR signal.     

SEC Characterization of Au Nanoparticles Prepared through Seed-Assisted Synthesis

In this paper we report the use of size-exclusion chromatography (SEC) for rapid determination of the sizes and size distributions of Au nanoparticles (NPs) prepared by seed-assisted synthesis. Analytical separation of Au NPs was performed in a polymer-based column of pore size 400 nm. We characterized the sizes and size distributions of the Au NPs by using 10 mM sodium dodecyl sulfate (SDS) as mobile phase and obtained a linear relationship (R ² = 0.986) between retention time and size of Au NPs within the range 9.8–79.1 nm; the relative standard deviations of these retention times were less than 0.3%. These separation conditions were used to characterize the sizes and size distributions of Au NPs prepared by seed-assisted synthesis. In addition to observing the elution times of the Au NPs we also simultaneously characterized their size-dependent optical properties by spectral measurement of the eluting peaks by use of an on-line diode-array detector (DAD), i.e., monitoring of the stability of the Au NP products. By using this approach we found the presence of SDS was beneficial in stabilizing the synthesized Au NPs. We also found that the volume of Au metal ions used affected the sizes of the final products. SEC seems an efficient tool for characterizing the sizes of NPs fabricated by seed-assisted synthesis.