Synchrotron fourier transform infrared microspectroscopy: A new tool to monitor the fate of organic contaminants in plants

FTIR microspectroscopy, with synchrotron radiation as a source, was used for the first time to study changes in plant structure induced by organic contaminants. Sunflower (Helianthus annuus L.) plants were grown hydroponically in the presence of benzotriazole. Changes in the plant structure due to uptake, incorporation, and/or transformation of benzotriazole were observed. False color intensity maps of benzotriazole treated secondary root sections showed changes in plant structure, as well as the presence of aromatic CH peaks due to incorporation of benzotriazole within the plant. The presence of the characteristic benzotriazole CH out-of-plane bending mode suggests that the contaminant aromatic ring remains intact upon the uptake by the plant. Simultaneously, the changes in the lignin structure suggest that the plant suffered damage by the uptake of the benzotriazole. Spectral variations between the untreated and benzotriazole treated sunflowers were uncovered using principal components analysis (PCA). PCA also revealed clustering according to the different benzotriazole treatments.     

Suitability of infrared spectroscopic imaging as an intraoperative tool in cerebral glioma surgery

Infrared spectroscopic imaging is a promising intraoperative tool which enables rapid, on-site diagnosis of brain tumors during neurosurgery. A classification model was recently developed using infrared spectroscopic images from thin tissue sections to grade malignant gliomas, the most frequent class of primary brain tumor. In this study the model was applied to 54 specimens from six patients with inhomogeneous gliomas composed of regions with different tumor density and morphology. The resection was controlled using neuronavigation which transfers the findings obtained by preoperative magnetic resonance imaging (MRI) into the operating field. For comparison, all specimens were independently evaluated by histopathology after hematoxylin and eosin staining. The infrared-derived grading agreed with histopathology and MRI findings for almost all specimens. With regard to histopathological assessment, sensitivities of 100% (22/22) and 93.1% (27/29) and specificities of 96.9% (31/32) and 88.0% (22/25) were achieved, depending on whether the classification was based on the predominant or maximal tumor grade, respectively, in the specimen. Altogether, in 98% (53/54) of all specimens the decision to continue or not continue tumor resection could have been made according to the infrared spectroscopic classification. This retrospective study clearly demonstrates that infrared spectroscopic imaging may help to define tumor margins intraoperatively and to detect high-grade tumor residues for achieving more radical tumor resection. MRT-guided tumor resection (left) is combined with infrared spectroscopy-based tissue classification (middle, right). With regard to histopathological assessment, sensitivities of 100% and 93.1% and specificities of 96.9% and 88.0% were achieved for 54 specimens. (TIF 47.1 KB)     

Classification of malignant gliomas by infrared spectroscopic imaging and linear discriminant analysis

Infrared (IR) spectroscopy provides a sensitive molecular fingerprint for tissue without external markers. Supervised classification models can be trained to identify the tissue type based on the spectroscopic fingerprint. Infrared imaging spectrometers equipped with multi-channel detectors combine the spectral and spatial information. Tissue areas of 4 x 4 mm(2) can be analyzed within a few minutes in the macroscopic imaging mode. An approach is described to apply this methodology to human astrocytic gliomas, which are graded according to their malignancy from one to four. Multiple IR images of three tissue sections from one patient with a malignant glioma are acquired and assigned to the six classes normal brain tissue, astrocytoma grade II, astrocytoma grade III, glioblastoma multiforme grade IV, hemorrhage, and other tissue by a linear discriminant analysis model which was trained by data from a single-channel detector. Before the model is applied here, the spectra are shown to be virtually identical. The first specimen contained approximately 95% malignant glioma regions, that means astrocytoma grade III or glioblastoma. The smaller percentage of 12-34% malignant glioma in the second specimen is consistent with its location at the tumor periphery. The detection of less than 0.2% malignant glioma in the third specimen points to a location outside the tumor. The results were correlated with the cellularity of the tissue which was obtained from the histopathologic gold standard. Potential applications of IR spectroscopic imaging as a rapid tool to complement established diagnostic methods are discussed.     

Detection of illicit substances in fingerprints by infrared spectral imaging

FTIR and Raman spectral imaging can be used to simultaneously image a latent fingerprint and detect exogenous substances deposited within it. These substances might include drugs of abuse or traces of explosives or gunshot residue. In this work, spectral searching algorithms were tested for their efficacy in finding targeted substances deposited within fingerprints. “Reverse” library searching, where a large number of possibly poor-quality spectra from a spectral image are searched against a small number of high-quality reference spectra, poses problems for common search algorithms as they are usually implemented. Out of a range of algorithms which included conventional Euclidean distance searching, the spectral angle mapper (SAM) and correlation algorithms gave the best results when used with second-derivative image and reference spectra. All methods tested gave poorer performances with first derivative and undifferentiated spectra. In a search against a caffeine reference, the SAM and correlation methods were able to correctly rank a set of 40 confirmed but poor-quality caffeine spectra at the top of a dataset which also contained 4,096 spectra from an image of an uncontaminated latent fingerprint. These methods also successfully and individually detected aspirin, diazepam and caffeine that had been deposited together in another fingerprint, and they did not indicate any of these substances as a match in a search for another substance which was known not to be present. The SAM was used to successfully locate explosive components in fingerprints deposited on silicon windows. The potential of other spectral searching algorithms used in the field of remote sensing is considered, and the applicability of the methods tested in this work to other modes of spectral imaging is discussed.     

Fast FTIR imaging: A new tool for the study of semicrystalline polymer morphology

The distribution of chemical species and the degree of orientation in semicrystalline polymer systems have been studied using fast Fourier transform infrared (FTIR) imaging. A variety of poly(ethylene glycol) systems, including pure polymer, high and low molecular weight blends, and blends with amorphous polymers, were studied. It is shown that fast FTIR imaging can be used to determine the distribution of species with different molecular weights and can be used to determine the degree of segregation of different components in blends with amorphous polymers. Additionally, by employing an infrared polarizer, the degree of orientation was determined in these systems by the generation of spatially‐resolved dichroic ratio images. © 1999 John Wiley & Sons, Inc. J Polym Sci B: Polym Phys 37: 2353–2359, 1999     

Application of FTIR imaging to detect dietary induced biochemical changes in brown and white adipocytes

Fourier Transform Infrared microspectroscopy Imaging (FTIR imaging) has powerful advantages when used as a complementary technique to histopathological investigations. The common histopathological investigations use a number of chemical fixatives and deparaffinizing agents that alter lipid profiles of biological tissues, particularly in lipid-rich adipose tissues. An infrared image is made of a multitude of pixels. For each pixel, identified by its (x,y) coordinates, corresponds an FTIR spectrum that reveals the chemical composition at this specific location. As a result, it allows biochemical analysis in selective locations within samples. Moreover, functional group distribution maps can be used as a staining free technique for spatial characterization of different biomolecules. Though FTIR imaging has been reported as a powerful approach to characterize adipose tissues, the biochemical heterogeneity within adipose tissues has not been acknowledged. This study shows relative changes in brown and white adipose tissues of mice due to consumption of high-fat diet. In particular, we report cryosectioning of adipose tissues, image acquisition, and different image analysis methods to evaluate dietary induced changes in lipids stored in brown and white adipocytes. Since biochemical changes in adipocytes constitute an important component in obesity investigations, this study shows the potential use of FTIR imaging to compare relative biochemical changes associated with dietary interventions.     

Applications of synchrotron radiation micro-focus techniques to the study of polymer and biopolymer fibers

Micro-X-ray diffraction using synchrotron radiation has been developed in recent years as a tool for the local analysis of bulk polymer and biopolymer samples. Developments in X-ray optics associated with the introduction of third generation synchrotron radiation sources now allow routine experiments at the 1 μm scale. Several experiments at the 100 nm scale have also been reported with future developments aiming for the 50 nm scale and smaller. In this review, the current state of experimental possibilities have been summarised with an emphasis on in-situ fiber scanning and deformation studies. Examples of unconventional in-situ studies such as microhardness testing or hydration by inkjet printing systems demonstrate the largely unexplored potential of micro-X-ray diffraction techniques.     

EPR study of radiation damage to DNA irradiated with synchrotron soft X-rays around nitrogen and oxygen K-edge

In order to obtain detailed insights into the physicochemical mechanism of DNA damage induction, “in situ” measurement of electron paramagnetic resonance (EPR) signal from DNA constituent nucleobases, guanine and adenine, has been performed in a vacuum using monochromatic synchrotron soft X-rays. We found that short-lived unpaired electron species arise only during irradiation to the evaporated thin film on a surface. The EPR spectrum of the short-lived species significantly depends on the photon energy irradiated, and the spin concentration obtained from the EPR spectra shows a similar fine structure to the X-ray photoabsorption spectra (X-ray absorption near edge structure; XANES). For the adenine sample, the spin concentration alters strikingly by water absorption on the sample surface. Trapping of photo- or Auger electrons into a newly generated potential in the nucleobases as the consequence of photoelectric effect is suggested as mechanisms of the induction of the short-lived species.     

Content uniformity of pharmaceutical solid dosage forms by near infrared hyperspectral imaging: A feasibility study

Near-infrared imaging systems simultaneously record spectral and spatial information. Each measurement generates a data cube containing several thousand spectra. Chemometric methods are therefore required to extract qualitative and quantitative information. The aim of this study was to determine the feasibility of quantifying active pharmaceutical ingredient (API) and excipient content in pharmaceutical formulations using hyperspectral imaging.Two kinds of tablets with a range of API content were analysed: a binary mixture of API and cellulose, and a pharmaceutical formulation with seven different compounds. Two pixel sizes, 10 μm/pixel and 40 μm/pixel, were compared, together with two types of spectral pretreatment: standard normal variate (SNV) normalization and Savitzky-Golay smoothing. Two methods of extracting concentrations were compared: the partial least squares 2 (PLS2) algorithm, which predicts the content of several compounds simultaneously, and the multivariate classical least squares (CLS) algorithm based on pure compound reference spectra without calibration.Best content predictions were achieved using 40 μm/pixel resolution and the PLS2 method with SNV normalized spectra. However, the CLS method extracted distribution maps with higher contrast and was less sensitive to noisy spectra and outliers; its API predictions were also highly correlated to real content, indicating the feasibility of predicting API content using hyperspectral imaging without calibration.     

Fourier transform infrared study on the sorption of water to various kinds of polymer thin films

The state of sorbed water and the sorbing processes of water to various polymer thin films were studied with Fourier transform infrared (FTIR) spectroscopy. To prepare the polymer films, we used poly(ethylene glycol)s of different molecular weights and various kinds of vinyl polymers, such as poly(2‐methoxyethyl acrylate). The O? H stretching band of water sorbed in the films increased gradually on contact with water vapor at 50% relative humidity and leveled off. When O? H stretching bands of water sorbed to polymer films were compared, the peak positions and profiles of water sorbed to the polymeric materials with the same hydrogen‐bonding site were similar. A hybrid density‐functional method supported the assignment of the peaks. Furthermore, the diffusion coefficient (D) of water vapor in the polymer films was estimated by time‐resolved measurements of the sorbed water at the very initial stage (0–830 s). It was clearly shown that the D values of water vapor in the polymer materials with a strong hydrogen‐bonding site were smaller than those in hydrophobic polymers. The usefulness of the FTIR technique to investigate water sorption to polymer materials was definitely demonstrated. © 2001 John Wiley & Sons, Inc. J Polym Sci Part B: Polym Phys 39: 2175–2182, 2001