Photodissociation of Hydrated Hydrogen Iodide Clusters

Using high‐level ab initio calculations and excited state ab initio molecular dynamics simulations, we show that hydrated iodic acids release hydrogen radicals and/or hydrogen molecules as well as iodine radicals upon excitation. Its photoreaction process involving charge transfer to the solvent takes place in four steps: 1) hydration of the acid, 2) charge transfer to water upon excitation of hydrated acid, 3) detachment of the neutral iodine atom, and 4) detachment of the hydrogen radical. The iodine detachment process from excited hydrated hydro–iodic acids is exothermic and the detachment of hydrogen radicals from hydrated hydronium radicals is spontaneous if the initial kinetic energy of the cluster is high enough to get over the activation barrier of the detachment. The complete release of the radicals can be understood in terms of kinetics. This study shows how the hydrogen and halogen radicals are dissociated and released from their hydrated acids. Simple experiments corroborate our predicted mechanism for the release of hydrogen molecules from iodic acid in water by ultraviolet light.     

On the structure and dynamics of the hydrated sulfite ion in aqueous solution--an ab initio QMCF MD simulation and large angle X-ray scattering study

Theoretical ab initio quantum mechanical charge field molecular dynamics (QMCF MD) formalism has been applied in conjunction to experimental large angle X-ray scattering to study the structure and dynamics of the hydrated sulfite ion in aqueous solution. The results show that there is a considerable effect of the lone electron-pair on sulfur concerning structure and dynamics in comparison with the sulfate ion with higher oxidation number and symmetry of the hydration shell. The S-O bond distance in the hydrated sulfite ion has been determined to 1.53(1) ? by both methods. The hydrogen bonds between the three water molecules bound to each sulfite oxygen are only slightly stronger than those in bulk water. The sulfite ion can therefore be regarded as a weak structure maker. The water exchange rate is somewhat slower for the sulfite ion than for the sulfate ion, τ(0.5) = 3.2 and 2.6 ps, respectively. An even more striking observation in the angular radial distribution (ARD) functions is that the for sulfite ion the water exchange takes place in close vicinity of the lone electron-pair directed at its sides, while in principle no water exchange did take place of the water molecules hydrogen bound to sulfite oxygens during the simulation time. This is also confirmed when detailed pathway analysis is conducted. The simulation showed that the water molecules hydrogen bound to the sulfite oxygens can move inside the hydration shell to the area outside the lone electron-pair and there be exchanged. On the other hand, for the hydrated sulfate ion in aqueous solution one can clearly see from the ARD that the distribution of exchange events is symmetrical around the entire hydration sphere.     

Hydrogen detachment of the hydrated hydrohalogen acids upon attaching an excess electron

High level ab initio calculations are employed to investigate the excess electron attachment to the hydrated hydrohalogen acids. The excess electron leads to the dissociation of hydrogen halide acids, which results in the release of a hydrogen radical. Neutral HCl, HBr, and HI are dissociated by tetrahydration. Upon binding an excess electron, these hydrated hydrohalogen acids show that (i) the H-X bond strength weakens with redshifted H-X stretching frequencies, (ii) HX can have a bound-electron state, a dissociated structure, or a zwitter-ionic structure, and (iii) HClHBr is dissociated by tri/mono-hydration, while HI is dissociated even without hydration. This dissociation is in contrast to the case of electron attachment to hydrated hydrogen fluoric acids for which HF is not dissociated by more than ten water molecules.     

Hydration of the Calcium Dication: Direct Evidence for Second Shell Formation from Infrared Spectroscopy

Infrared laser action spectroscopy in a Fourier‐transform ion cyclotron resonance mass spectrometer is used in conjunction with ab initio calculations to investigate doubly charged, hydrated clusters of calcium formed by electrospray ionization. Six water molecules coordinate directly to the calcium dication, whereas the seventh water molecule is incorporated into a second solvation shell. Spectral features indicate the presence of multiple structures of Ca(H₂O)₇²⁺ in which outer‐shell water molecules accept either one (single acceptor) or two (double acceptor) hydrogen bonds from inner‐shell water molecules. Double‐acceptor water molecules are predominately observed in the second solvent shells of clusters containing eight or nine water molecules. Increased hydration results in spectroscopic signatures consistent with additional second‐shell water molecules, particularly the appearance of inner‐shell water molecules that donate two hydrogen bonds (double donor) to the second solvent shell. This is the first reported use of infrared spectroscopy to investigate shell structure of a hydrated multiply charged cation in the gas phase and illustrates the effectiveness of this method to probe the structures of hydrated ions.     

Ab initio study of the hydration of carbon dioxide: Additional comments based on refined calculations

Ab initio calculations on the formation of carbonic acid from the hydration of carbon dioxide with water dimer are re-examined. Fully optimized geometries of the three stationary points (minima and transition state) with the 3-21G basis set are reported. They possess non-planar structures. The inclusion of polarization (with the 6-31G* basis) and electron correlation (via Møller-Plesset perturbation theory to second through to fourth-order using the 6-31G basis) tends to enlarge the energy barrier (35–40 kcal mol⁻¹) for the double hydrogen transfer. This suggests that the neutral hydrolysis of CO₂ could require more water molecules (an oligomer) in an autocatalytic process rather than a dimer.     

The influence of water on the intercalation of epoxy monomers in Na-montmorillonite

The intercalation of a typical UV-curable epoxy monomer (CE) in unmodified montmorillonite and the effect of hydration on the intercalation reaction are studied. Montmorillonite in the sodium form was submitted to a controlled hydration/dehydration cycle and the water content was checked by TGA/XRD analyses. The structure of the hydrated Na+-montmorillonite was determined from the values of the basal spacings and from the water content of the hydrated form: a coordination of four water molecules per Na ion was found, corresponding to a minimum of energy calculated by molecular dynamics simulation. When dispersing the clay in the CE monomer, the anhydrous Na+-montmorillonite did not show any intercalation; on the contrary the hydrated form showed an increase of the basal spacing. A possible mechanism to explain the intercalation of the CE monomers is proposed.     

Theoretical Investigation on the Adsorption of Ag^＋ and Hydrated Ag^＋ Cations on Clean Si（111） Surface

In this paper, the adsorption of Ag^＋ and hydrated Ag^＋ cations on clean Si（111） surface were investigated by using cluster （Gaussian 03） and periodic （DMol^3） ab initio calculations. Si（111） surface was described with cluster models （Si14H17 and Si22H21） and a four-silicon layer slab with periodic boundary conditions. The effect of basis set superposition error （BSSE） was taken into account by applying the counterpoise correction. The calculated results indicated that the binding energies between hydrated Ag^＋ cations and clean Si（111） surface are large, suggesting a strong interaction between hydrated Ag^＋ cations and the semiconductor surface. With the increase of number, water molecules form hydrogen bond network with one another and only one water molecule binds directly to the Ag^＋ cation. The Ag^＋ cation in aqueous solution will safely attach to the clean Si（111） surface.     

Effect of exchangeable cation on the swelling property of 2:1 dioctahedral smectite--a periodic first principle study

We used both localized and periodic calculations on a series of monovalent (Li+, Na+, K+, Rb+, Cs+) and divalent (Mg2+, Ca2+, Sr2+, Ba2+) cations to monitor their effect on the swelling of clays. The activity order obtained for the exchangeable cations among all the monovalent and divalent series studied: Ca2+ > Sr2+ > Mg2+ > Rb+ > Ba2+ > Na+ > Li+ > Cs+ > K+. We have shown that, in case of dioctahedral smectite, the hydroxyl groups play a major role in their interaction with water and other polar molecules in the presence of an interlayer cation. We studied both type of clays, with a different surface structure and with/without water using a periodic calculation. Interlayer cations and charged 2:1 clay surfaces interact strongly with polar solvents; when it is in an aqueous medium, clay expands and the phenomenon is known as crystalline swelling. The extent of swelling is controlled by a balance between relatively strong swelling forces and electrostatic forces of attraction between the negatively charged phyllosilicate layer and the positively charged interlayer cation. We have calculated the solvation energy at the first hydration shell of an exchangeable cation, but the results do not correspond directly to the experimental d-spacing values. A novel quantitative scale is proposed with the numbers generated by the relative nucleophilicity of the active cation sites in their hydrated state through Fukui functions within the helm of the hard soft acid base principle. The solvation effect thus measured show a perfect match with experiment, which proposes that the reactivity index calculation with a first hydration shell could rationalize the swelling mechanism for exchangeable cations. The conformers after electron donation or acceptance propose the swelling mechanism for monovalent and divalent cations.     

Cooperative effects in water tetramers. Comparison between the empirical many-body model TCPE and ab initio calculations

Ab initio calculations at the MP2/6-311+G(2d,2p) and the empirical water many-body model TCPE have been applied to the study of four water tetramers corresponding to various molecular arrangements. For the cyclic tetramer (where each molecule is simultaneously donor and acceptor of hydrogen bonds, HBs), cooperative effects have been shown from ab initio computations to be stabilizing and to represent a contribution in the binding energy of 9 kcal mol⁻¹, while for the tetramer where only two molecules are simultaneously donor and acceptor of HB, such effects are stabilizing by only 1.5 kcal mol⁻¹. At last, for the tetramer where no molecule is simultaneously donor and acceptor of HBs, cooperative effects are smoothly destabilizing. TCPE predictions have been shown to be in good agreement with these ab initio estimates, both in terms of binding energy and cooperative effect contribution, which exhibits the accuracy of this potential.     

Drawing out the structural information of the first layer of hydrated ions: ATR-FTIR spectroscopic studies on aqueous NH4NO3, NaNO3, and Mg(NO3)2 solutions

ATR-FTIR technique was used to obtain the difference spectra of aqueous NH4NO3 NaNO3, and Mg(NO3)2 solutions, with NO3- concentrations ranging from 0 to 4.00 mol dm(-3). The water monomers weakly hydrogen bonded with NO3- ions showed a positive peak near at 3565 cm(-1) for both Mg(NO3)2 and NH4NO3 solutions. The positive peak was shift to approximately 3543 cm(-1) for NaNO3 solutions due to the total contributions of the hydrated NO3- (approximately 3565 cm(-1)) and the hydrated Na+ (approximately 3440 cm(-1)). Compared with perchlorate solutions, the positive peak of nitrate solutions has a red shift of about 20 cm(-1) and the peak area is about half of that of perchlorate solutions with the same concentrations, indicating that the hydrogen bonding between NO3- and water monomers is relative stronger than that between ClO4- and water monomers, and NO3- has a strict requirement on the orientation of water molecules when hydrogen bonded with water monomers due to its planar structure. The ab initio calculations were used to understand the splitting of the nu3 band and hydration effect on the infrared activation of the nu1. The absorbance of nu3b, nu1 and nu2 bands, dependent on the type of cations, was observed to departed from Beer low with increasing concentrations, which is considered as the results of the interactions between cations and nitrate ions.     

Electrospray and matrix-assisted laser desorption/ionization mass spectral characterization of linear single nylon-6 oligomers

Synthetic nylon-6 single molecular mass oligomers were studied by matrix-assisted laser desorption/ionization (MALDI) and electrospray ionization (ESI) mass spectrometry. These oligomers, considered as model compounds for the study of nylon-6 polymers, gave good mass spectrometric results using both MALDI and ESI. In spite of the gentle nature of both techniques, the MALDI and ESI spectra showed evidence of end-group cleavage from the oligomer chains. MALDI-MS was found to give similar fragmentation patterns for all of the oligomer samples. An increase in doubly charged ion signals with increasing oligomer mass was observed in the ESI mass spectra, as was end-group fragmentation. Signals from oligomer clusters were observed in ESI-MS for the dimer, tetramer and hexamer, most likely due to non-covalent bonding among the low-mass oligomer molecules.     

Density functional study of intradimer proton transfers in hydrated adenine dimer ions, A2(+)(H2O)n (n = 0-2)

Structures of mono- and dihydrated adenine dimers and their cations were calculated using B3LYP density functional theory with the 6-31+G(d,p) basis set, in order to help understand photofragmentation experiments of hydrated adenine dimers from the energetics point of view. Several important pathways leading to the major fragmentation product, protonated adenine ion (AH(+)), thermodynamically at minimum costs were investigated at the ground-state electronic potential surface of hydrated adenine dimer cations. Our calculations suggest that the proton transfer from one adenine moiety to the other in hydrated dimer ions readily occurs with negligible barriers in normal hydration conditions. In asymmetrically hydrated ions, however, the proton transfer to more hydrated adenine moieties is kinetically hindered due to heightened transition-state barriers, while the other way is still barrierless. Such directional preference in proton transfer may be characterized as a unique dimer ion property, stemming from the difference in basicity of the two nitrogen atoms involved in the double hydrogen bond that would be equivalent without hydration. We also found that dimer cleavage requires about 4 times larger energy than evaporation of individual water molecules, so it is likely that most solvent molecules evaporate before the eventual dimer cleavage when available internal energy is limited.     

Ab initio molecular dynamics study of formate ion hydration

We perform ab initio molecular dynamics simulations of the aqueous formate ion. The mean number of water molecules in the first solvation shell, or the hydration number, of each formate oxygen is found to be consistent with recent experiments. Our ab initio pair correlation functions, however, differ significantly from many classical force field results and hybrid quantum mechanics/molecular mechanics predictions. They yield roughly one less hydrogen bond between each formate oxygen and water than force field or hybrid methods predict. Both the BLYP and PW91 exchange correlation functionals give qualitatively similar results. The time dependence of the hydration numbers are examined, and Wannier function techniques are used to analyze electronic configurations along the molecular dynamics trajectory.     

A possible mechanism of the photooxidation of water sensitized by chlorophyll adsorbed at the interface

A four-electron mechanism is proposed for the photooxidation of water in a system of two immiscible liquids containing chlorophyll a, a water-soluble electron acceptor, a hydrophobic proton acceptor, and a buffer for maintaining optimal proton concentration. A hydrated chlorophyll oligomer, which is adsorbed at the interface and closely packed so that the electron clouds of porphyrin rings overlap, becomes excited upon illumination; an oxidized form of the pigment and a reduced form of the electron acceptor are formed. In the reaction centre, water is coordinatively bound to the magnesium of one of the chlorophyll molecules, by means of hydrogen bonds to a carboxyl group of another chlorophyll molecule and to a proton acceptor (the pentachlorophenyl anion) required in a model system for the protection of chlorophyll against pheophytinization. The oxidized chlorophyll oligomer, consisting of two hydrated dimers or a tetramer, can be responsible for the dark stage: the four-electron oxidation of water to molecular oxygen. Experimental data in favour of this mechanism are presented.     

Hydroxide ion hydration in aqueous solutions

Hydroxide ion hydration was studied in aqueous solutions of selected alkali metal hydroxides by means of Fourier transform infrared (FTIR) spectroscopy of HDO isotopically diluted in H2O. The quantitative difference spectra procedure was applied for the first time to investigate such systems. It allowed removal of bulk water contribution and separation of the spectra of solute-affected HDO. The obtained spectral data were confronted with ab initio calculated structures of small gas-phase and polarizable continuum solvation model (PCM) solvated aqueous clusters, OH-(H2O)n, n = 1-7, to establish the structural and energetic states of hydration spheres of the hydrated hydroxide anion. This was achieved by comparison of the calculated optimal geometries with the interatomic distances derived from HDO band positions. The energetic state of water in OH- hydration shells, as revealed by solute-affected HDO spectra, is similar to that of an isoelectronic F- anion. No evidence was found for the existence of stable hydroxide dimer, H3O2-, in an aqueous solution. Spectral data do confirm, however, existence of a weak interaction with a single water molecule at the hydrogen site of OH-.     

Ab initio study of L-orientational defect in the hydrogen-bonded pattern of liquid water

Current status of the theory of orientational defects in H-bonded pattern of liquid water is briefly reviewed. Ab initio calculated water clusters from dimer to heptamer are thoroughly analyzed in terms of H-bonded pattern. New water heptamer structure of norbornane type is found via ab initio HF 6-311G** calculation. Its normal vibrations are properly assigned. Two ab initio water hexamers that refer to orientational defects are revealed. This is the first evidence of ab initio orientational defect in H-bonded patterns of water clusters. Some properties including normal vibrations of these defects, are studied.     

Ab initio molecular dynamics study of carbon dioxide and bicarbonate hydration and the nucleophilic attack of hydroxide on CO2

We apply ab initio molecular dynamics (AIMD) to study the hydration structures of the carbon dioxide molecule and the bicarbonate and carbonate anions in liquid water. We also compute the free energy change associated with the nucleophilic attack of the hydroxide ion on carbon dioxide. CO2 behaves like a hydrophobic species and exhibits weak interactions with water molecules. The bicarbonate and carbonate ions are strongly hydrated and coordinate to an average of 6.9 and 8.7 water molecules, respectively. The energetics for the reaction in the gas phase are investigated using density functional theory and second-order M?ller-Plesset perturbation theory (MP2) in conjunction with high-quality basis sets. Using umbrella sampling techniques, we compute the standard state, aqueous phase free energy difference associated with the reaction CO2+OH--->HCO3- after correcting AIMD energies with MP2 results. Our predictions are in good agreement with experiments. The hydration structures along the reaction coordinate, which give rise to a predicted 9.7 kcal/mol standard state free energy barrier, are further analyzed.     

The effects of hydrogen-bonding environment on the polarization and electronic properties of water molecules

Adequate representation of the interactions that take place between water molecules has long been a goal of force field design. A full understanding of how the molecular charge distribution of water is altered by adjacent water molecules and by the hydrogen-bonding environment is a vital step toward achieving this task. For this purpose we generated ab initio electron densities of pure water clusters and hydrated serine and tyrosine. Quantum chemical topology enabled the study of a well-defined water molecule inside these clusters, by means of its volume, energy, and multipole moments. Intra- and intermolecular charge transfer was monitored and related to the polarization of water in hydrogen-bonded networks. Our analysis affords a way to define different types of water molecules in clusters.     

Predicted stability and structure of (HXeCCH)n (n=2 or 4) clusters and of crystalline HXeCCH

Ab initio calculations predict the existence of the dimer and tetramer of HXeCCH. The interaction energies are -6.66 and -19.40 kcal mol-1 for the dimer and tetramer, respectively. For both complexes, larger blue shifts of the Xe-H stretching mode are found, while the Xe-C stretching modes are slightly redshifted. The stability and structure of HXeCCH crystals is predicted by density functional theory calculations with periodic boundary conditions. Strong electrostatic interactions are found between the monomers in the crystal. The results are first evidence for the existence of crystalline materials made of a novel class of noble gas molecules.