Displacement of neutral nitrogen donors by chloride in [Pt(SNS)(R-py)](ClO4)2 (SNS = 2,6-bis(methylthiomethyl)pyridine; R-py = pyridines): A reactivity comparison between meta- and para-substituted pyridines

The kinetics of the process [Pt(SNS)(R-py)]²⁺ + Cl⁻ → [Pt(SNS)Cl]⁺ + R-py {SNS = 2,6-bis(methylsulfanylmethyl)pyridine; R-py = meta- or para-substituted pyridines covering a wide range of basicity} were studied in methanol at 25 °C. The reactions obey the usual two-term rate law observed in the substitution reactions of square-planar d⁸ complexes. The plots of log k₂ {k₂ = second-order rate constants} against the pK_a of the heterocycles conjugate acids highlighted a different sensitivity of the two groups of N-donors to changes in basicity, thepara-substituted pyridines (4R-py) showing a weaker dependence on pK_a than the meta-substituted (3R-py). The results have been explained on the basis of a π-acidity difference between 3R-py and 4R-py which influences the reaction ground state.     

Kinetic study of the oxidative addition reaction between methyl iodide and [Rh(FcCOCHCOCF3)(CO)(PPh3)]: Structure of [Rh(FcCOCHCOCF3)(CO)(PPh3)(CH3)(I)]

The kinetics of oxidative addition of CH₃I to [Rh(FcCOCHCOCF₃)(CO)(PPh₃)], where Fc = ferrocenyl and (FcCOCHCOCF₃)⁻ = fctfa = ferrocenoylacetonato, have been studied utilizing UV/Vis, IR, ¹H and ³¹P NMR techniques. Three definite sets of reactions involving isomers of at least two distinctly different classes of Rh^III-alkyl and two different classes of Rh^III-acyl species were observed. Rate constants for this reaction in CHCl₃ at 25 °C, applicable to the reaction sequence below, were determined as k₁ = 0.00611(1) dm³ mol⁻¹ s⁻¹, k₋₁ = 0.0005(1) s⁻¹, k₃ = 0.00017(2) s⁻¹ and k₄ = 0.0000044(1) s⁻¹ while k₋₃ ? k₃ and k₋₄ ? k₄ but both ≠0. The indeterminable equilibrium K₂ was fast enough to be maintained during Rh^I depletion in the first set of reactions and during the Rh^IIIalkyl2 formation in the second set of reactions. From a ¹H and ³¹P NMR study in CDCl₃, K_c1 was found to be 0.68, K_c2 = 2.57, K_c3 = 1.00, K_c4 = 4.56 and K_c5 = 1.65.     

Environmental assessment of CFC alternatives: Rate constants for the reactions of OH radicals with fluorinated compounds

The rate constants for the reactions of OH radicals with CF₃OCHFCF₃, and CF₃CHFCF₃ have been measured over the temperature range 250-430 K. Kinetic measurements have been carried out using the flash photolysis, and laser photolysis methods combined, respectively, with the laser induced fluorescence technique. The influence of impurities in the samples has been investigated by using gas chromatography. No sizable effect of impurities was found on the measured rate constants of these fluorinated compounds, if the purified samples were used in the measurements. The following Arrhenius expressions were determined: k(CF₃OCHFCF₃) = (4.39 ± 1.38) × 10⁻¹³ exp[−(1780 ± 100)/T] cm³ molecule⁻¹ s⁻¹, and k(CF₃CHFCF₃) = (6.19 ± 2.07) × 10⁻¹³ exp[−(1830 ± 100)/T] cm³ molecule⁻¹ s⁻¹.     

Q-mode curve resolution of UV-vis spectra for structural transformation studies of anthocyanins in acidic solutions

Chemometric analysis of ultraviolet-visible (UV-vis) spectra for pH values 1.0, 3.3, 5.3, and 6.9 was used to investigate the kinetics and the structural transformations of anthocyanins in extracts of calyces of hibiscus flowers of the Hibiscus acetosella Welw. ex Finicius for the first time. Six different species were detected: the quinoidal base (A), the flavylium cation (AH⁺), the pseudobase or carbinol pseudobase (B), cis-chalcone (C_C), trans-chalcone (C_t), and ionized cis-chalcone (⁻CC). Four equilibrium constant values were calculated using relative concentrations, hydration, pK_h = 2.60 ± 0.01, tautomeric, K_T = 0.14 ± 0.01, acid-base, pK_a = 4.24 ± 0.04, and ionization of the cis-chalcone, pKCC=8.74±1.5×1⁰−2. The calculated protonation rate of the tautomers is KH+=0.08±7.6×10⁻³. These constants are in excellent agreement with those measured previously in salt form. From a kinetic viewpoint, the situation encountered is interesting since the reported investigation is limited to visible light absorption in acid medium. These models have not been reported in the literature.     

Oxidation of substituted pyridines by dimethyldioxirane: kinetics and solvent effects

The oxidation of a series of substituted pyridines by dimethyldioxirane (1) produced the expected N-oxides in quantitative yields. The second order rate constants (k₂) for the oxidation of a series of substituted pyridines (2a-g) by dimethyldioxirane were determined in dried acetone at 23 °C. An excellent correlation with Hammett sigma values was found (ρ = −2.91, r = 0.995). Kinetic studies for the oxidation of 4-trifluoromethylpyridine by 1 were carried out in the following dried solvent systems: acetone (k₂ = 0.017 M⁻¹ s⁻¹), carbon tetrachloride/acetone (7:3; k₂ = 0.014 M⁻¹ s⁻¹), acetonitrile/acetone (7:3; k₂ = 0.047 M⁻¹ s⁻¹), and methanol/acetone (7:3; k₂ = 0.68 M⁻¹ s⁻¹). Kinetic studies of the oxidation of pyridine by 1 versus mole fraction of water in acetone [k₂ = 0.78 M⁻¹ s⁻¹ (χ = 0) to k₂ = 11.1 M⁻¹ s⁻¹ (χ = 0.52)] were carried out. The results showed the reaction to be very sensitive to protic, polar solvents.     

Comparison of pyrimethanil-imprinted beads and bulk polymer as stationary phase by non-linear chromatography

A pyrimethanil-imprinted polymer (P1) was prepared by iniferter-mediated photografting a mixture of methacrylic acid and ethylene dimethacrylate onto homemade near-monodispersed chloromethylated polydivinylbenzene beads. The chromatographic behaviour of a column packed with these imprinted beads was compared with another column packed with irregular particles obtained by grinding a bulk pyrimethanil-imprinted polymer (P2). The comparison was made using the kinetic model of non-linear chromatography, studying the elution of the template and of two related substances, cyprodinil and mepanipyrim. Extension of the region of linearity, capacity factors for the template and the related substances, column selectivity, binding site heterogeneity, apparent affinity constant (K) and lumped kinetic association (k_a) and dissociation rate constant (k_d) were studied during a large interval of solute concentration, ranging between 1 and 2000 μg/ml. From the experimental results obtained, in the linearity region of solute concentration column selectivity and binding site heterogeneity remained essentially the same for the two columns, while column capacity (at 20 μg/ml, P1 = 23.1, P2 = 11.5), K (at 20 μg/ml, P1 = 8.3 × 10⁶ M⁻¹, P2 = 2.5 × 10⁶ M⁻¹) and k_a (at 20 μg/ml, P1 = 3.5 μM⁻¹ s⁻¹, P2 = 0.47 μM⁻¹ s⁻¹) significantly increased and k_d (at 20 μg/ml, P1 = 0.42 s⁻¹, P2 = 0.67 s⁻¹) decreased for the column packed with the imprinted beads. These results are consistent with an influence of the polymerisation method on the morphology of the resulting polymer and not on the molecular recognition properties due to the molecular imprinting process.     

Fluorophilicity of alkyl and polyfluoroalkyl nicotinic acid ester prodrugs

The fluorophilicity of a series of hydrocarbon and fluorocarbon-functionalized nicotinic acid esters (nicotinates) is measured from their partitioning behavior (log K_p) in the biphasic solvent system of perfluoro(methylcyclohexane) (PFMC) and toluene. The chain length of the hydrocarbon or fluorocarbon alkyl group of the ester ranges from one to twelve carbon atoms. Knowledge of the fluorophilicity of these solutes is relevant to the design of these prodrugs for fluorocarbon-based drug delivery. The experimental log K_p values range from −1.72 to −3.40 for the hydrocarbon nicotinates and −1.64 to 0.13 for the fluorinated nicotinates, where only the prodrug with the longest fluorinated chain (2,2,3,3,4,4,5,5,6,6,7,7,8,8,8-pentadecafluorooctyl nicotinic acid ester) partitions preferentially into the fluorinated phase (log K_p = 0.13). Predictions of the partition coefficients using solubility parameters calculated from group contribution techniques or molecular dynamics simulation are in reasonable agreement for the perhydrocarbon nicotinates and short chained perfluorinated nicotinates (≈0.3-39% deviation). Significant deviations from experimental partition coefficients (greater than 100%) are observed for the longest chain perfluoroalkyl nicotinates.     

Enthalpy change and mechanism of oxidation of o-phenylenediamine by hydrogen peroxide catalyzed by horseradish peroxidase

The hydrogen peroxide-oxidation of o-phenylenediamine (OPD) catalyzed by horseradish peroxidase (HRP) at 37 °C in 50 mM phosphate buffer (pH 7.0) was studied by calorimetry. The apparent molar reaction enthalpy with respect to OPD and hydrogen peroxide were −447 ± 8 kJ mol⁻¹ and −298 ± 9 kJ mol⁻¹, respectively. Oxidation of OPD by H₂O₂ catalyzed by HRP (1.25 nM) at pH 7.0 and 37 °C follows a ping-pong mechanism. The maximum rate V_max (0.91 ± 0.05 μM s⁻¹), Michaelis constant for OPD K_m,S (51 ± 3 μM), Michaelis constant for hydrogen peroxide Km,H₂O₂ (136 ± 8 μM), the catalytic constant k_cat (364 ± 18 s⁻¹) and the second-order rate constants k₊₁ = (2.7 ± 0.3) × 10⁶ M⁻¹ s⁻¹ and k₊₅ = (7.1 ± 0.8) × 10⁶ M⁻¹ s⁻¹ were obtained by the initial rate method.     

High acidity of polycyano azatriquinanes—theoretical prediction by the DFT calculations

It is shown by the B3LYP/6-311+G(2d,p)//B3LYP/6-31G(d) calculations that the hexacyano derivative of aza-acepentalene is an extremely powerful superacid both in the gas phase and in DMSO as evidenced by the ΔH_acid = 255.1  kcal mol⁻¹ and pK_a (DMSO) = −26.5. Its synthesis is strongly recommended, in particular, since the related conjugate base hexachloro aza-acepentalenide anion was prepared recently.     

Complexation of β-cyclodextrin with carborane derivatives in aqueous solution

β-Cyclodextrin formed the most robust complexes with o-carboranols 1b and 1c in aqueous solution, and the association constants estimated from NMR titration studies indicated K_a >1 × 10⁶ M⁻¹ and K_a = 6 × 10⁵ M⁻¹, respectively.     

Change in mechanistic pathway of hydroboration: A detailed kinetic study of H2BBr·SMe2 and HBBr2·SMe2

Hydroboration reactions of 1-octene and 1-hexyne with H₂BBr·SMe₂ in CH₂Cl₂ were studied as a function of concentration and temperature, using ¹¹B NMR spectroscopy. The reactions exhibited saturation kinetics. The rate of dissociation of dimethyl sulfide from boron at 25 °C was found to be (7.36 ± 0.59 and 7.32 ± 0.90) × 10⁻³ s⁻¹ for 1-octene and 1-hexyne, respectively. The second order rate constants, k₂, for hydroboration worked out to be 7.00 ± 0.81 M s⁻¹ and 7.03 ± 0.70 M s⁻¹, while the overall composite second order rate constants, k K, were (3.30 ± 0.43 and 3.10 ± 0.37) × 10⁻² M s⁻¹, respectively at 25 °C. The entropy and enthalpy values were found to be large and positive for k₁, whilst for k₂ these were large and negative, with small values for enthalpies. This is indicative of a limiting dissociative (D) for the dissociation of Me₂S and associative mechanism (A) for the hydroboration process. The overall activation parameters, ΔH^≠ and ΔS^≠, were found to be 98 ± 2 kJ mol⁻¹ and +56 ± 7 J K⁻¹ mol⁻¹ for 1-octene whilst, in the case of 1-hexyne these were found out to be 117 ± 7 kJ mol⁻¹ and +119 ± 24 J K⁻¹ mol⁻¹, respectively. When comparing the kinetic data between H₂BBr·SMe₂ and HBBr₂·SMe₂, the results showed that the rate of dissociation of Me₂S from H₂BBr·SMe₂ is on average 34 times faster than it is in the case of HBBr₂·SMe₂. Similarly, the rate of hydroboration with H₂BBr·SMe₂ was found to be on average 11 times faster than it is with HBBr₂·SMe₂. It is also clear that by replacing a hydrogen substituent with a bromine atom in the case of H₂BBr·SMe₂ the mechanism for the overall process changes from limiting dissociative (D) to interchange associative (I_a).     

Study of diffusion-controlled and activation-diffusion-controlled electron-transfer processes from quenching measurements

The diffusion-controlled rate constants, k_d, of various quenching reactions, [Ru(L)₃]^2+∗ (L = bpy, phen and 4,7-(CH₃)₂phen) + [Fe(CN)₆]³⁻, were measured through fluorescence measurements. From them, the effective values of viscosity coefficients for several methanol + water mixtures were calculated. These coefficients were checked through calculations of the rate constants of the reaction [IrCl₆]²⁻ + [Ru(bpy)₃]^2+∗, which were also obtained by fluorescence quenching measurements. The agreement between the two sets of data (experimental and predicted) is excellent. Besides, the trends of association, k_d, and dissociation, k_−d, rate constants for 2+/3−, 2+/2− and 2+/2+ reactions in methanol-water mixtures are discussed. The use of effective diffusion coefficients for estimating k_d and k_−d allowed us to obtain the intrinsic electron transfer rate constant, k_et, for the activation-diffusion-controlled process between [Ru(bpy)₃]^2+∗ and [Co(NH₃)₅Cl]²⁺ complexes from the observed (quenching) rate constant. The influence of methanol-water mixtures on k_et was rationalized by using the Marcus electron-transfer treatment.     

Kinetic simulation of living carbocationic polymerizations. II. Simulation of living isobutylene polymerization using a mechanistic model

This paper discusses the kinetic simulation of TiCl₄--coinitiated living carbocationic isobutylene (IB) polymerizations governed by dormant-active equilibria, using a mechanistic model. Two kinetic models were constructed from the same underlying mechanism: one using a commercial simulation software package (Predici^®), and the other using the method of moments. Parameter estimation from experimental batch reactor data with Predici yielded a rate constant of propagation k_p = 4.64 × 10⁸ ± 2.75 × 10⁸ L/mol s, with no constraints imposed. This agrees with k_p data measured with diffusion clock and competition methods, but disagrees with kinetically obtained k_p values. Estimation of rate constants with Predici^® and the GREG parameter estimation software packages revealed that it was difficult to estimate the complete set of kinetic parameters, due to correlated effects of the parameters on model predictions. Estimability analysis confirmed that some of the strongly correlating parameters could not be estimated simultaneously using the available experimental data. Using k_p = 6 × 10⁸ ± 2.75  × 10⁸ L/mol s measured by Mayr, and using starting estimates of other rate constants defined by experimentally observed correlations, yielded the set of rate constants required for the simulations. Both kinetic models yielded good agreement with experimental data, with the exception of M_w values that slightly diverged from the theoretically predicted ‘M_w−M_n = constant’ relationship. This may indicate the occurrence of a minor side reaction. However, the k_p/k₋₁ = 17.5 L/mol average run length calculated from measured and simulated MWD data agrees well with earlier literature values.     

Study of binding and denaturation dynamics of IgG and anti-IgG using dual color fluorescence correlation spectroscopy

In this article, we present a systematic study on IgG and Fab fragment of anti-IgG molecules using fluorescence auto- and cross-correlation spectroscopy to investigate their diffusion characteristics, binding kinetics, and the effect of small organic molecule, urea on their binding. Through our analysis, we found that the diffusion coefficient for IgG and Fab fragment of anti-IgG molecules were 37 ± 2 μm² s⁻¹ and 56 ± 2 μm² s⁻¹, respectively. From the binding kinetics study, the respective forward (k_a) and backward (k_d) reaction rates were (5.25 ± 0.25) × 10⁶ M⁻¹ s⁻¹ and 0.08 ± 0.005 s⁻¹, respectively and the corresponding dissociation binding constant (K_D) was 15 ± 2 nM. We also found that urea inhibits the binding of these molecules at 4 M concentration due to denaturation.     

Calorimetric investigation of the effect of hydroxyanthraquinones in Rheum officinale Baill on Staphylococcus aureus growth

The inhibitory effects of five hydroxyanthraquinones (HAQs) from root and rhizoma of Rheum officinale Baill, a traditional Chinese medicinal (TCM) herb, on Staphylococcus aureus growth were investigated by calorimetry. The power-time curves of S.aureus with and without HAQ were acquired and the extent and duration of inhibitory effects on the metabolism evaluated by growth rate constants (k₁, k₂), half inhibitory ratio (IC₅₀), maximum heat output (P_max) and peak time (t_p). The value of k₁ and k₂ of S. aureus in the presence of the five HAQs decreased with the increasing concentrations of HAQs. Moreover, P_max was reduced and the value of t_p increased with increasing concentrations of the five drugs. The inhibitory activity varied for different drugs. IC₅₀ of the five HAQs was 4 μg ml⁻¹ for emodin, 3.5 μg ml⁻¹ for rhein, 10 μg ml⁻¹ for aloe-emodin, 1000 μg ml⁻¹ for chrysophanol, 1600 μg ml⁻¹ for physcion. The sequence of antimicrobial activity of the five HAQs: rhein > emodin > aloe-emodin > chrysophanol > physicion.     

Heat capacity, enthalpy and entropy of ternary bismuth tantalum oxides

Heat capacity and enthalpy increments of ternary bismuth tantalum oxides Bi₄Ta₂O₁₁, Bi₇Ta₃O₁₈ and Bi₃TaO₇ were measured by the relaxation time method (2-280 K), DSC (265-353 K) and drop calorimetry (622-1322 K). Temperature dependencies of the molar heat capacity in the form C_pm=445.8+0.005451T−7.489×10⁶/T² J K⁻¹ mol⁻¹, C_pm=699.0+0.05276T−9.956×10⁶/T² J K⁻¹ mol⁻¹ and C_pm=251.6+0.06705T−3.237×10⁶/T² J K⁻¹ mol⁻¹ for Bi₃TaO₇, Bi₄Ta₂O₁₁ and for Bi₇Ta₃O₁₈, respectively, were derived by the least-squares method from the experimental data. The molar entropies at 298.15 K, S°_m(298.15 K)=449.6±2.3 J K⁻¹ mol⁻¹ for Bi₄Ta₂O₁₁, S°_m(298.15 K)=743.0±3.8 J K⁻¹ mol⁻¹ for Bi₇Ta₃O₁₈ and S°_m(298.15 K)=304.3±1.6 J K⁻¹ mol⁻¹ for Bi₃TaO₇, were evaluated from the low-temperature heat capacity measurements.     

Determination of pKa value, kinetic studies of decomposition and oxygen transfer for chromium(VI) peroxide

The determination of pK_a value for the unstable chromium(VI) peroxide, CrO(O₂)₂(H₂O) in aqueous solution is presented. The pK_a value is found to be (1.55 ± 0.03). The kinetic decomposition of chromium(VI) peroxide is dependent on the concentration of hydrogen peroxide in the pH range between 2.5 and 4.0. We have proposed the possible explanation for the formation of triperoxo chromium complex of hydrogen peroxide which is dependent on decomposition. Activation of coordinate peroxide in chromium(VI) peroxide observed in the kinetic studies is by reduction of thiolato-cobalt(III) complex. The rate constant (M⁻¹ s⁻¹, 15 °C) for the oxygen atom transfer reaction from CrO(O₂)₂(OH)⁻ to (en)₂Co(SCH₂CH₂NH₂)²⁺ is found to be (25.0 ± 1.3).     

A computational study on mixed-ligand N2P3 donor-set iron(II) and ruthenium(II) classical and non-classical hydrides

Iron and ruthenium classical and non-classical hydrides of the type [MH(N–N)P₃]⁺ and [M(η²-H₂)(N–N)P₃]²⁺ {M = Fe, Ru; N–N = 2,2′-bipyridine (bpy), 1,10-phenanthroline (phen); P = phosphites} were reported in 2004 together with an evaluation of the pseudo-aqueous pK_a values of the η²-H₂ complexes. The non-classical hydrides, even if doubly charged, showed a relatively low acidity, their pK_a values ranging between −5.4 and −4.3. Moreover, ruthenium(II) derivatives showed to be more acidic than the corresponding iron(II) complexes. Information about the structural and electronic proprieties of complexes of this type, which allowed to better understand the role of both the metal centres and the ancillary ligands in the acidity of the co-ordinated hydrogen molecule, was obtained on the basis of DFT B3LYP calculations.     

Challenges in modelling and optimisation of stability constants in the study of Cu-(TAPS)x-(OH)y system by polarography

This work describes the application of polarography, a technique scarcely used for modelling and optimisation of stability constants, in the study of copper complexes with [(2-hydroxy-1,1-bis(hydroxymethyl)ethyl)amino]-1-propanesulfonic acid (TAPS). Direct current polarography (DCP), using low total copper ion and large total ligand to total copper concentration, enabled the full characterization of Cu-(TAPS)_x-(OH)_y system, whose complexation occurs in the pH range of copper hydrolysis and Cu(OH)₂ precipitation. Cu-(TAPS)_x-(OH)_y system was studied by DCP and glass electrode potentiometry (GEP) in aqueous solution at fixed total ligand to total metal concentrations ratios and varied pH values (25.0 °C; I = 0.1 M, KNO₃). The predicted model, as well as the overall stability constants values, are (as log β): CuL⁺ = 4.2, CuL₂ = 7.8, CuL₂(OH)⁻ = 13.9 and CuL₂(OH)₂²⁻ = 18.94. GEP only allowed confirming the stability constants for CuL⁺ and CuL₂ and was used to determine the pKa of TAPS, 8.342.Finally, a briefly comparative analysis between TAPS and other structural related buffers was done. Evaluation based on log β_CuL versus pKa revealed that TES, TRIS, TAPS and AMPSO coordinated via amino and hydroxymethylgroups forming a five-membered chelate ring. For BIS-TRIS and TAPSO, and possibly DIPSO, one or more five-membered chelate rings involving additional hydroxyl groups are also likely formed.