Micelle‐Triggered β‐Hairpin to α‐Helix Transition in a 14‐Residue Peptide from a Choline‐Binding Repeat of the Pneumococcal Autolysin LytA

Choline‐binding modules (CBMs) have a ββ‐solenoid structure composed of choline‐binding repeats (CBR), which consist of a β‐hairpin followed by a short linker. To find minimal peptides that are able to maintain the CBR native structure and to evaluate their remaining choline‐binding ability, we have analysed the third β‐hairpin of the CBM from the pneumococcal LytA autolysin. Circular dichroism and NMR data reveal that this peptide forms a highly stable native‐like β‐hairpin both in aqueous solution and in the presence of trifluoroethanol, but, strikingly, the peptide structure is a stable amphipathic α‐helix in both zwitterionic (dodecylphosphocholine) and anionic (sodium dodecylsulfate) detergent micelles, as well as in small unilamellar vesicles. This β‐hairpin to α‐helix conversion is reversible. Given that the β‐hairpin and α‐helix differ greatly in the distribution of hydrophobic and hydrophilic side chains, we propose that the amphipathicity is a requirement for a peptide structure to interact and to be stable in micelles or lipid vesicles. To our knowledge, this “chameleonic” behaviour is the only described case of a micelle‐induced structural transition between two ordered peptide structures.     

Ubiquitin Associates with the N‐Terminal Domain of Nerve Growth Factor: The Role of Copper(II) Ions

Many biochemical pathways involving nerve growth factor (NGF), a neurotrophin with copper(II) binding abilities, are regulated by the ubiquitin (Ub) proteasome system. However, whether NGF binds Ub and the role played by copper(II) ions in modulating their interactions have not yet been investigated. Herein NMR spectroscopy, circular dichroism, ESI‐MS, and titration calorimetry are employed to characterize the interactions of NGF with Ub. NGF_1–14, which is a short model peptide encompassing the first 14 N‐terminal residues of NGF, binds the copper‐binding regions of Ub (K_D=8.6 10^?5 m ). Moreover, the peptide undergoes a random coil–polyproline type II helix structural conversion upon binding to Ub. Notably, copper(II) ions inhibit NGF_1–14/Ub interactions. Further experiments performed with the full‐length NGF confirmed the existence of a copper(II)‐dependent association between Ub and NGF and indicated that the N‐terminal domain of NGF was a valuable paradigm that recapitulated many traits of the full‐length protein.     

Structure of the O‐Glycosylated Conopeptide CcTx from Conus consors Venom

The glycopeptide CcTx, isolated from the venom of the piscivorous cone snail Conus consors, belongs to the κA‐family of conopeptides. These toxins elicit excitotoxic responses in the prey by acting on voltage‐gated sodium channels. The structure of CcTx, a first in the κA‐family, has been determined by high‐resolution NMR spectroscopy together with the analysis of its O‐glycan at Ser7. A new type of glycopeptide O‐glycan core structure, here registered as core type 9, containing two terminal L ‐galactose units {α‐L ‐Galp‐(1→4)‐α‐D ‐GlcpNAc‐(1→6)‐[α‐L ‐Galp‐(1→2)‐β‐D ‐Galp‐(1→3)‐]α‐D ‐GalpNAc‐(1→O)}, is highlighted. A sequence comparison to other putative members of the κA‐family suggests that O‐linked glycosylation might be more common than previously thought. This observation alone underlines the requirement for more careful and in‐depth investigations into this type of post‐translational modification in conotoxins.     

Oxonium Ions Substituting Cesium Ions in the Structure of the New High‐Pressure Borate HP‐Cs1−x(H3O)xB3O5 (x=0.5–0.7)

The new high‐pressure borate HP‐Cs_1?x(H₃O)_xB₃O₅ (x=0.5–0.7) was synthesized under high‐pressure/high‐temperature conditions of 6 GPa/900 °C in a Walker‐type multianvil apparatus. The compound crystallizes in the monoclinic space group C2/c (Z=8) with the parameters a=1000.6(2), b=887.8(2), c=926.3(2) pm, β=103.1(1)°, V=0.8016(3) nm³, R1=0.0452, and wR2=0.0721 (all data). The boron–oxygen network is analogous to those of the compounds HP‐MB₃O₅, (M=K, Rb) and exhibits all three structural motifs of borates—BO₃ groups, corner‐sharing BO₄ tetrahedra, and edge‐sharing BO₄ tetrahedra—at the same time. Channels inside the boron–oxygen framework contain the cesium and oxonium ions, which are disordered on a specific site. Estimating the amount of hydrogen by solid‐state NMR spectroscopy and X‐ray diffraction led to the composition HP‐Cs_1?x(H₃O)_xB₃O₅ (x=0.5–0.7), which implies a nonzero phase width.     

Photodissociation Spectroscopy of CD3I+ Generated by Mass‐Analyzed Threshold Ionization for Structure Determination

A method is devised better to resolve the subbands of the ground vibronic band in the mass‐analyzed threshold ionization (MATI) spectrum of CD₃I. By selective photodissociation of CD₃I⁺ in these subbands, high‐resolution spectra for the à ²A₁← ²E_3/2 transition are recorded. Spectral analysis confirms our previous suggestion that these subbands are due to cations in different rotational K states; this demonstrates the capability of MATI to generate rovibronically selected ion beams. By using the rotational constants of CH₃I⁺ and CD₃I⁺ obtained by spectral analysis, the zero‐point‐level geometries of the cations in the ²E_3/2 and à ²A₁ states are determined. To the best of our knowledge, this is the first time that the capability of MATI–PD to determine the geometry of a gas‐phase polyatomic cation in an excited electronic state is demonstrated.     

Characterization of different poly(2‐oxazoline) block copolymers by MALDI‐TOF MS/MS and ESI‐Q‐TOF MS/MS

A complete library of poly(2‐oxazoline) block copolymers was synthesized via cationic ring opening polymerization for the characterization by two different soft ionization techniques, namely matrix‐assisted laser desorption/ionization time‐of‐flight mass spectrometry (MALDI‐TOF MS) and electrospray ionization quadrupole time‐of‐flight mass spectrometry (ESI‐Q‐TOF MS). In addition, a detailed characterization was performed by tandem MS to gain more structural information about the block copolymer composition and its fragmentation behavior. The fragmentation of the poly(2‐oxazoline) block copolymers revealed the desired polymer structure and possible side reactions, which could be explained by different mechanisms, like 1,4‐ethylene or hydrogen elimination and the McLafferty +1 rearrangement. Polymers with aryl side groups showed less fragmentation due to their higher stability compared to polymers with alkyl side groups. These insights represent a further step toward the construction of a library with fragments and their fragmentation pathways for synthetic polymers, following the successful examples in proteomics. © 2010 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem, 2010     

Block length determination of the block copolymer mPEG‐b‐PS using MALDI‐TOF MS/MS

The molar mass determination of block copolymers, in particular amphiphilic block copolymers, has been challenging with chromatographic techniques. Therefore, methoxy poly(ethylene glycol)‐b‐poly(styrene) (mPEG‐b‐PS) was synthesized by atom transfer radical polymerization (ATRP) and characterized in detail not only by conventional chromatographic techniques, such as size exclusion chromatography (SEC), but also by matrix‐assisted laser/desorption ionization tandem mass spectrometry (MALDI‐TOF MS/MS). As expected, different molar mass values were obtained in the SEC measurements depending on the calibration standards (either PEG or PS). In contrast, MALDI‐TOF MS/MS analysis allowed the molar mass determination of each block, by the scission of the weakest point between the PEG and PS block. Thus, fragments of the individual blocks could be obtained. The PEG block showed a depolymerization reaction, while for the PS block fragments were obtained in the monomeric, dimeric, and trimeric regions as a result of multiple chain scissions. The block length of PEG and PS could be calculated from the fragments recorded in the MALDI‐TOF MS/MS spectrum. Furthermore, the assignment of the substructures of the individual blocks acquired by MALDI‐TOF MS/MS was accomplished with the help of the fragments that were obtained from the corresponding homopolymers. © 2010 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem, 2010     

Determination of avoparcin in animal tissues and milk using LC‐ESI‐MS/MS and tandem‐SPE

A highly sensitive and selective method using LC‐ESI‐MS/MS and tandem‐SPE was developed to detect trace amounts of avoparcin (AV) antibiotics in animal tissues and milk. Data acquisition using MS/MS was achieved by applying multiple reaction monitoring of the product ions of [M + 3H]³⁺ and the major product ions of AV‐α and ‐β at m/z 637 → 86/113/130 and m/z 649 → 86/113/130 in ESI(+) mode. The calculated instrumental LODs were 3 ng/mL. The sample preparation was described that the extraction using 5% TFA and the tandem‐SPE with an ion‐exchange (SAX) and InertSep C18‐A cartridge clean‐up enable us to determine AV in samples. Ion suppression was decreased by concentration rates of each sample solution. These SPE concentration levels could be used to detect quantities of 5 ppb (milk), 10 ppb (beef), and 25 ppb (chicken muscle and liver). The matrix matching calibration graphs obtained for both AV‐α (r >0.996) and ‐β (r >0.998) from animal tissues and milk were linear over the calibration ranges. AV recovery from samples was higher than 73.3% and the RSD was less than 12.0% (n = 5).     

The Structure of Gas Phase Tin Oxide Ions Generated by Laser Ablation: A Combined Fourier Transform Mass Spectrometry and Density Functional Theory Study

The radical ion series (SnO)⁺ _2-6, (SnO)^– _2-6, (SnO)_0-5Sn⁺ and (SnO)_1-6O^– have been generated by the high power laser ablation of SnO and SnO₂ targets positioned inside an ICR cell. In all ablation spectra obtained, and for any particular size Sn _x core, the tin-rich clusters (SnO) _x Sn⁺ were more abundant than the corresponding oxygen-equivalent clusters (SnO)⁺ _x , while the oxygen-rich clusters (SnO) _x O^– were always more abundant than the oxygen-equivalent clusters (SnO)^– _x . High yields of the ions (SnO)_1,3Sn⁺, (SnO)_3,6O^– and (SnO)^– ₆ suggest high stabilities for these species. Low energy CID studies revealed that loss of neutral (SnO) _x units is the preferred, and for most ions investigated the exclusive, dissociation pathway. Global minima for the smaller cations and anions are proposed on the basis of local density functional theory (DFT) calculations. Calculated dissociation energies for the neutral and charged clusters were found to compare well with effusion cell and FTICR results. DFT also predicts that, for any cluster with the same size Sn _x core, IE(SnO) _x x Sn and EA(SnO) _x O>EA(SnO) _x . A correlation between ion abundances and DFT heats of formation is evident, and the ground state geometries provide insight into the evolution of structural versus size trends. Without assistance from the calculations, erroneous conclusions regarding the structures of the experimentally-sampled clusters might have been drawn from the low energy CID results.     

Crystal Structure and Mass Spectrometric Fragmentation Behavior of Eprosartan

The crystal structure determination and mass spectrometric fragmentation analysis of the medicinal ingredient eprosartan （4-[2-butyl-5-（2-carboxy-3-thiophen-2-yl-propenyl）-imidazol-l-ylmethyl]-benzoic acid） are presented. The single-crystal X-ray diffraction shows that the colorless transparent crystal of eprosartan is of monoclinic system, space group P2/c with a = 16.1861（15）, b = 10.9813（12）, c = 28.610（3） A, β = 118.452（2）°, Z = 4, V= 4471.1（8） A3, Dc = 1.288 g/cm3,μ（MoKα） = 0.178 mm^-1 and F（000） = 1831. The independent part of the unit cell contains two eprosartan molecules and one unordered H2O molecule in the crystal structure which is fixed by inter- and intramolecular hydrogen bonds. The product ions in electrospray ionization tandem mass spectrometry （ESI-MSn） displays the protonated eprosartan dissociated in three competitive pathways and the fragmentation mechanism is proposed and supported by the FTICRMSn results.     

A Multicoincidence Study of Fragmentation Dynamics in Collision of γ‐Aminobutyric Acid with Low‐Energy Ions

Fragmentation of the γ‐aminobutyric acid molecule (GABA, NH₂(CH₂)₃COOH) following collisions with slow O⁶⁺ ions (v≈0.3 a.u.) was studied in the gas phase by a combined experimental and theoretical approach. In the experiments, a multicoincidence detection method was used to deduce the charge state of the GABA molecule before fragmentation. This is essential to unambiguously unravel the different fragmentation pathways. It was found that the molecular cations resulting from the collisions hardly survive the interaction and that the main dissociation channels correspond to formation of NH₂CH₂⁺, HCNH⁺, CH₂CH₂⁺, and COOH⁺ fragments. State‐of‐the‐art quantum chemistry calculations allow different fragmentation mechanisms to be proposed from analysis of the relevant minima and transition states on the computed potential‐energy surface. For example, the weak contribution at [M?18]⁺, where M is the mass of the parent ion, can be interpreted as resulting from H₂O loss that follows molecular folding of the long carbon chain of the amino acid.     

Functionality,Effectiveness, and Mechanistic Evaluation of a Multicatalyst‐Promoted Reaction Sequence by Electrospray Ionization Mass Spectrometry

A multicatalytic three‐step reaction consisting of epoxidation, hydrolysis, and enantioselective monoacylation of cyclohexene was studied by using mass spectrometry (MS). The reaction sequence was carried out in a one‐pot reaction using a multicatalyst. All reaction steps were thoroughly analyzed by electrospray ionization (ESI) MS (and MS/MS), as well as high‐resolution MS for structure elucidation. These studies allow us to shed light on the individual mode of action of each catalytic moiety. Thus, we find that under the epoxidation conditions, the catalytically active N‐methyl imidazole for the terminal acylation step is partially deactivated through oxidation. This observation helps to explain the lower efficiency of the catalyst in the last step compared to the monoacylation performed separately. All reactive intermediates and products of the reaction sequence, as well as of the side‐reactions, were monitored, and we present a working mechanism of the reaction.     

Mass Spectrometric Observation of Doubly Charged Alkaline‐Earth Argon Ions

Doubly charged diatomic ions MAr²⁺ where M=Mg, Ca, Sr or Ba have been observed by mass spectrometry with an inductively coupled plasma ion source. Abundance ratios are quite high, 0.1 % for MgAr²⁺, 0.4 % for CaAr²⁺, 0.2 % for SrAr²⁺ and 0.1 % for BaAr²⁺ relative to the corresponding doubly charged atomic ions M²⁺. It is assumed that these molecular ions are formed through reactions of the doubly charged metal ions with neutral argon atoms within the ion source. Bond dissociation energies (D₀) were calculated and agree well with previously published values. The abundance ratios MAr⁺/M⁺ and MAr²⁺/M²⁺ generally follow the predicted bond dissociation energies with the exception of MgAr²⁺. Mg²⁺ should form the strongest bond with Ar [D₀ (MgAr²⁺)=124 to 130 kJ mol^?1] but its relative abundance is similar to that of the weakest bound BaAr²⁺ (D₀=34 to 42 kJ mol^?1). The relative abundances of the various MAr²⁺ ions are higher than those expected from an argon plasma at T=6000 K, indicating that collisions during ion extraction reduce the abundance of the MAr²⁺ ions relative to the composition in the source. The corresponding singly charged MAr⁺ ions are also observed but occur at about three orders of magnitude lower intensity than MAr²⁺.     

Ion‐Induced Fragmentation of Amino Acids: Effect of the Environment

In general, radiation‐induced fragmentation of small amino acids is governed by the cleavage of the C? C_α bond. We present results obtained with 300 keV Xe²⁰⁺ ions that allow molecules (glycine and valine) to be ionised at large distances without appreciable energy transfer. Also in the present case, the C? C_α bond turns out to be the weakest link and hence its scission is the dominant fragmentation channel. Intact ionised molecules are observed with very low intensities. When the molecules are embedded in a cluster of amino acids, a protective effect of the environment is observed. The fragmentation pattern changes: the C? C_α bond becomes more protected and stable amino acid cations are observed as fragments of the molecular clusters. Evidently, the molecular cluster acts as a “buffer” for the excess energy, capable of rapidly redistributing excess energy and charge.     

Studies on Fragmentation Pathways of N-Ethoxy （phenyl） phosphoryl Amino Acids by Electrospray Ionization Tandem Mass Spectrometry

IntroductionPhosphorylation often acts as a molecular switchcontrolling the protein activity in different pathways asin metabolism,signal transduction,cell division,andso on.Therefore,N-phosphoryl amino acids play aspecial and important role in biological…     

Homo‐ and Heteroleptic Bismuth(III/V) Thiolates from N‐Heterocyclic Thiones: Synthesis,Structure and Anti‐Microbial Activity

Homo‐ and heteroleptic bismuth thiolato complexes have been synthesised and characterised from biologically relevant tetrazole‐, imidazole‐, thiadiazole‐ and thiazole‐based heterocyclic thiones (thiols): 1‐methyl‐1H‐tetrazole‐5‐thiol (1‐MMTZ(H)); 4‐methyl‐4H‐1,2,4‐triazole‐3‐thiol (4‐MTT(H)); 1‐methyl‐1H‐imidazole‐2‐thiol (2‐MMI(H)); 5‐methyl‐1,3,4‐thiadiazole‐2‐thiol (5‐MMTD(H)); 1,3,4‐thiadiazole‐2‐dithiol (2,5‐DMTD(H)₂); and 4‐(4‐bromophenyl)thiazole‐2‐thiol (4‐BrMTD(H)). Reaction of BiPh₃ with 1‐MMTZ(H) produced the rare Bi^V thiolato complex [BiPh(1‐MMTZ)₄], which undergoes reduction in DMSO to give [BiPh(1‐MMTZ)₂{(1‐MMTZ(H)}₂]. Reactions with PhBiCl₂ or BiPh₃ generally produced monophenylbismuth thiolates, [BiPh(SR)₂]. The crystal structures of [BiPh(1‐MMTZ)₂{1‐MMTZ(H)}₂], [BiPh(5‐MMTD)₂], [BiPh{2,5‐DMTD(H)}₂(Me₂C?O)] and [Bi(4‐BrMTD)₃] were obtained. Evaluation of the bactericidal properties against M. smegmatis, S. aureus, MRSA, VRE, E. faecalis and E. coli showed complexes containing the anionic ligands 1‐ MMTZ, 4‐MTT and 4‐BrMTD to be most effective. The dithiolato dithione complexes [BiPh(4‐MTT)₂{4‐MTT(H)}₂] and [BiPh(1‐MMTZ)₂{1‐MMTZ(H)}₂] were most effective against all the bacteria: MICs 0.34 μM for [BiPh(4‐MTT)₂{4‐MTT(H)}₂] against VRE, and 1.33 μM for [BiPh(1‐MMTZ)₂{1‐MMTZ(H)}₂] against M. smegmatis and S. aureus. Tris‐thiolato Bi^III complexes were least effective overall. All complexes showed little or no toxicity towards mammalian COS‐7 cells at 20 μg mL^?1.