半胱氨酸阴离子与咪唑阳离子间相互作用的理论研究

采用密度泛函理论在B3LYP/6-311＋G(d,p)水平上对1-乙基-3-甲基咪唑阳离子和半胱氨酸阴离子形成的气态阴阳离子对([Emim][Cys])进行理论研究. 通过几何结构优化以及频率分析得到势能面上7个稳定的离子对构型. 计算结果表明[Emim]＋和[Cys]－之间存在较强的氢键相互作用, 其稳定化能主要来源于[Cys]－中羰基O的孤对电子lp(O) 和[Emim]＋中C—H反键轨道 s*(C—H) 之间的相互作用, lp(O)®s*(C—H). [Emim][Cys]_S1是最稳定的离子对构型, 考虑BSSE的相互作用能为－387.66 kJ/mol. 从NPA和NBO分析以及AIM (Atoms in Molecules)计算等方面阐述了半胱氨酸阴离子与咪唑阳离子之间氢键相互作用的本质, 并初步探讨了阴阳离子对相互作用对氨基酸离子液体性质的影响.     

离子液体1-乙基-3-甲基咪唑三氟甲基磺酸盐与水之间的氢键作用

通过衰减全反射红外（ATR-IR）光谱、二维红外相关谱结合量子化学计算研究了1-乙基-3-甲基咪唑三氟甲基磺酸盐（[emim][OTf]）和水之间的氢键作用. 结果表明,在[emim][OTf]^-水体系中,当水的浓度较低时（0.1< x（D₂O）< 0.3）,水分子的主要存在形式是包裹在离子液体中的没有缔合的单体. 水分子优先填充到[emim][OTf]的空隙中,并且与[emim][OTf]的阴离子形成“[OTf]^-…HOH…[OTf]^-”结构,水分子与[emim][OTf]的阳离子的相互作用位点是烷基氢而不是芳香氢;当水分子浓度较高时,水分子倾向于自身缔合形成小团簇结构,水分子与[emim][OTf]的阳离子的相互作用位点是芳香氢而不是烷基氢.     

离子液体1-乙基-3-甲基咪唑三氟甲基磺酸盐与水之间的氢键作用(英文)

通过衰减全反射红外(ATR-IR)光谱、二维红外相关谱结合量子化学计算研究了1-乙基-3-甲基咪唑三氟甲基磺酸盐([emim][OTf])和水之间的氢键作用.结果表明,在[emim][OTf]-水体系中,当水的浓度较低时(0.1x(D2O)0.3),水分子的主要存在形式是包裹在离子液体中的没有缔合的单体.水分子优先填充到[emim][OTf]的空隙中,并且与[emim][OTf]的阴离子形成"[OTf]-…HOH…[OTf]-"结构,水分子与[emim][OTf]的阳离子的相互作用位点是烷基氢而不是芳香氢;当水分子浓度较高时,水分子倾向于自身缔合形成小团簇结构,水分子与[emim][OTf]的阳离子的相互作用位点是芳香氢而不是烷基氢.     

1-丁基-3-甲基咪唑硫酸氢盐离子液体与含氮化合物相互作用的理论研究

采用密度泛函理论方法研究了1-丁基-3-甲基咪唑硫酸氢盐离子液体[Bmim]HSO_4与氮化物喹啉和吲哚分子的相互作用,并进行了NBO和AIM分析。[Bmim]HSO_4离子对最稳定结构表明,[HSO_4]~-阴离子中的氧原子与咪唑环中正电性较大的C14-H20之间有较强的氢键作用。在分子水平上,NBO和AIM分析证实了喹啉和吲哚分子与[Bmim]HSO_4的阴离子之间有较强的相互作用,其中,喹啉分子中的氮原子与阴离子[HSO_4]~-中氢原子之间的作用以及吲哚分子中N-H的氢原子与[HSO_4]~-中氧原子之间的作用是该离子液体能够有效脱除氮化物的主要动力。     

1-乙基-3-甲基咪唑四氟硼酸盐离子液体的量子化学研究

The results of the quantum chemistry study of the ionic liquid 1-ethyl-3-methylimidazolium tetrafluoroborate (EMIM+BF4-) were reported. The ab initio method and density functional theory (B3LYP method) was used to optimize the stable structure of the gas phase ion pair at the level of 6-311++G** basis set, respectively. An IR spectra for EMIM+BF4- were obtained through the vibrational analysis. The changes of atomic charge assignments have been investigated using the Natural Bond Orbital method. The computational results show that there exist hydrogen bonds and other weak interactions between the cation and the anion. Using counterpoise correction method to estimate the basis set superposition error, the interaction energy between the cation and anion is 346.78 kJ/mol.     

1-乙胺基-3-甲基咪唑四氟硼酸盐吸收CO_2的理论研究

采用密度泛函理论(DFT)对离子液体1-乙胺基-3-甲基咪唑四氟硼酸盐([NH2e-mim][BF4])吸收CO_2的反应机理进行了研究.在B3LYP/6-311++G(d,p)计算水平下,对离子液体[NH2e-mim][BF4]的结构及与CO_2反应的中间体、过渡态和产物进行了全优化,获得了优化结构的构型参数、振动频率和热力学数据.利用自然键轨道(NBO)分析了离子液体[NH2e-mim][BF4]和CO_2的自然电荷布居.计算结果表明,通过阳离子[NH2e-mim]+自偶解离产生的阳离子[NH3e-mim]2+能与阴离子[BF4]-结合形成更强的离子键.根据反应吉布斯自由能变(ΔG0—)和焓变(ΔH0—)的计算结果,判断离子液体[NH2e-mim][BF4]吸收CO_2按理论摩尔比2∶1分步进行反应,吸收过程中质子的转移需克服52.51 k J/mol的能垒.     

咪唑氟硼酸类离子液体熔点与分子内相互作用能的关系

运用密度泛函理论B3LYP方法及6-311++G(d,p)基组对11种咪唑氟硼酸离子液体进行了研究.选择相应化合物的离子体系{[XIM][BF4]n}(n-1)-(n=2,3)作为研究对象,即研究体系由一个烷基咪唑阳离子XIM+和2-3个BF4-阴离子构成,对其进行结构优化.在优化得到的最低能量构型的基础上计算了分子内阳离子与阴离子间的相互作用能,同时考虑了基组重叠误差的修正.结果表明所研究离子体系的离子间相互作用能与离子液体的实验熔点之间存在明确的线性关系,并且所得到的线性方程与氨基酸阳离子型离子液体中存在的线性关系相近.我们的工作为今后借助量子化学方法设计功能化离子液体提供了一定的理论基础.     

碱(土)金属离子与2-(3′-羟基-2′-吡啶基)苯并噁唑阳离子-π复合物及其分子内质子转移过程的理论研究

采用密度泛函B3LYP方法,在6-311++G(d,p)基组水平上对碱(土)金属离子(Li+,Na+,K+,Be2+,Mg2+和Ca2+)与2-(3’-羟基-2’-吡啶基)苯并噁唑(HPyBO)的36种阳离子-π复合物的初始构型进行了几何全优化,并计算了其相互作用能.结果表明,碱(土)金属离子与HPyBO复合物有较强的阳离子-π相互作用,部分复合物甚至达到了化学键的强度.相对能量的变化表明碱(土)金属离子的作用能改变HPyBO分子内质子转移过程的能垒,甚至可以导致优势构型反转.当考虑水的溶剂效应后,各质子转移异构体的相对能量及质子转移的能垒均有一定程度的改变.另外,应用分子中的原子(AIM)方法对复合物分子内氢键的键临界点性质进行了分析.     

阴离子表面活性剂与阳离子的相互作用

用密度泛函理论, 在B3LYP/6-31G水平上, 对十二烷基磺酸盐和羧酸盐阴离子表面活性剂与阳离子(Na+, Ca2+, Mg2+)形成的离子对进行结构优化, 从分子水平上研究表面活性剂与阳离子之间的相互作用. 计算结果表明: 磺酸盐和羧酸盐表面活性剂均采用2:1型, 即极性头中两个氧原子与阳离子发生稳定结合; 在与阳离子结合之前, 表面活性剂分子上的α-亚甲基带有明显的负电荷, 因此将其归为极性头; 但在阳离子电荷诱导下, α-亚甲基转而带有部分弱正电荷, 使极性头范围缩小. 计算也发现, 表面活性剂尾链带有弱正电荷, 使胶束内核带有了部分极性, 利于表面活性剂在溶液中的聚集, 此种极性介于烷烃油相和水相的极性之间.     

红外伏吸法研究抗坏血酸在水溶液和离子液体1-乙基-3-甲基咪唑四氟硼酸盐中的电化学行为

采用电化学及红外伏吸法研究了抗坏血酸(AA)在水溶液和离子液体1-乙基-3-甲基咪唑(EMIMBF4)中的电化学行为.AA在EMIMBF4中与在水溶液中一样,不可逆氧化成脱氢抗坏血酸(DHAA).现场红外光谱结果表明,DHAA在水中迅速发生水解反应,而在EMIMBF4中则较稳定.在EMIMBF4中,AA的羰基峰出现在1739 cm-1处,DHAA的羰基峰出现在1785 cm-1处,它们相比于游离态的羰基发生了红移.原因可能是AA和DHAA与EMIMBF4间易形成氢键,或者是AA自身形成了氢键,DHAA以二聚体的形态存在.     

方酸与2, 6-二苯并咪唑的超分子自组装及氢键实验与理论研究

在氘代的二甲基亚砜的溶剂中合成了方酸与2, 6-二苯并咪唑的超分子的化合物,并用X射线单晶衍射对其结构进行了表征。晶体结构分析表明:超分子是通过π-π堆积和分子之间氢键所形成的一维链状的聚合物。探讨了不同温度和不同浓度CCl₄溶剂对聚合物中氢键的影响。此外,用密度泛函理论和分子中原子理论对其进行了理论分析,计算结果表明分子间的键能分别是135.65和49.40 J·mol^-1。     

Theoretical Study on Ionic Liquid Based on 1-Ethyl-3-Methyl- Imidazolium Cation and Hexafluorophosphate or Tetrafluoroborate

The Hartree-Fock and DFT/B3LYP methods have been employed to investigate the electronic structures of 1-ethy1-3-methyl-imidazolium cation(EMIM~ ),BF_4~-,PF_6~-,EMIM~ -BF_4~-,and EMIM~ -PF_6~- using the Gaussian-94 soft-package at 6-31 G(d,p)basis set level for hydrogen,carbon,nitrogen,boron, phosphorus,and fluorine atoms.Comparison of the electronic structures of the lowest energy of EMIM~ - BF_4~- and EMIM~ -PF_6~- pairs,and single EMIM~ ,BF_4~- and PF_6~- showed that the optimized EMIM~ -BF_4~- and EMIM~ -PF_6~- pair conformers were BF_4~- and PF_6~- outside the 5-ring plane between the ethyl group and the methyl group.The cohesion of C—H…F hydrogen bond between cation and anion is reinforced by charge assistance.The interaction energy between EMIM~ and PF_6~- is 328.8 kJ/mol at the B3LYP level and 326.6 kJ/mol at the Hartree-Fock level,whereas that between EMIM~ and BF_4~- is 353.5 kJ/mol at the B3LYP level and 350.5 kJ/mol at the Hartree-Fock level.The low energy interactions caused by bulky asymmetric EMIM~ ,and charge dispersion of cation and anion give rise to the low melting point of ionic liquid EMIM~ -BF_4~- and EMIM~ -PF_6~-.The two hydrogen bonding models of single hydrogen bond formation,and the hydrogen transfer between C_2 in EMIM~ and F in BF_4~- or PF_6~- were principally depicted.     

Theoretical Investigation on Interaction between Guanine and Luteolin

The interacting patterns of the luteolin and guanine have been investigated by using the density functional theory B3LYP method with 6-31＋G＊ basis set. Eighteen stable structures for the luteolin-guanine complexes have been found respectively. The results indicate that the complexes are mainly stabilized by the hydrogen bonding interactions. Meanwhile, both the number and strength of hydrogen bond play important roles in determining the stability of the complexes which can form two or more hydrogen bonds. Theories of atoms in molecules and natural bond orbital have also been utilized to investigate the hydrogen bonds involved in all the systems. The interaction energies of all the complexes which were corrected by basis set superposition error are 6.04-56.94 kJ/mol. The calculation results indicate that there are strong hydrogen bonding interactions in the luteolin-guanine complexes. We compared the interaction between luteolin and four bases of DNA, and found luteolin-thymine was the strongest and luteolin-adenine was the weakest. The interaction between luteolin and DNA bases are all stronger than luteolin-water.     

[EPy][BF4]和[EPy][PF6]离子对的气相及液相阴阳离子相互作用研究

采用从头算HF/6-31G和密度泛函理论B3LYP/6-31+G(d,p)方法, 对乙基吡啶四氟硼酸盐([EPy][BF4])和乙基吡啶六氟磷酸盐([EPy][PF6])的离子对进行了结构优化和频率分析, 并利用自洽反应场(SCRF)的导体极化连续模型(CPCM)考察了离子对液态下的结构及相互作用, 得到了两种离子对的红外光谱及气相、液相下最稳定结构. 由两种离子对的几何参数可知, 阴阳离子通过氢键相互作用, 两种离子液体的红外光谱特征值与实验值比较吻合. 应用自然键轨道(NBO)理论分析了吡啶阳离子及离子对中的原子电荷分布和电荷转移情况, 结果表明两种离子对中阴阳离子间存在静电相互作用和氢键作用. 通过几何参数、相互作用能及NBO分析研究发现, 液相下由于周围电荷的中和作用, 离子对中阴阳离子的相互作用明显降低.     

HArF和HNO二聚体相互作用氢键的理论研究

The hydrogen bonding interaction of 1:1 dimer formed between HNO and HArF molecule has been completely investigated in the present study using Second-order M?ller-Plesset Perturbation (MP2) method in conjunction with 6-311+G**, 6-311++G** and 6-311++G(2d,2p) basis sets. The standard and CP-corrected calculations have been employed to determine the equilibrium structures, the vibrational frequencies and interaction energies. The interaction energies of the dimers were also calculated at G2MP2 level. Two stable structures are found as the minima. Dimer I(H···F)is a five-membered cyclic hydrogen bonded structure and is more stable than the Dimer II(H···O). The blue-shifted N-H···F hydrogen bond is confirmed with standard and CP-corrected calculations by the MP2 and DFT methods in conjunction with different basis sets. The results obtained at MP2 in conjunction with different basis sets show there is a red-shifted hydrogen bond (Ar-H···O) in the Dimer II(H···O). The topological and electronic properties, the origin of red- and blue-shifted hydrogen bonds were investigated at MP2/6-311++G(2d,2p) with CP corrected calculations. From the NBO analysis, the reasonable explanations for the red- and blue-shifted hydrogen bonds were proposed.     

Hydride abstraction of methylamine with Cu(S) in the gas phase: A density functional theory study

The gas-phase hydride abstraction of methylamine with Cu⁺(¹S) is theoretically investigated by using density functional theory. Geometries for all the stationary points involved are fully optimized at both the B3LYP/6-311++G(d,p) and B3LYP/6-311++G(3df,2p) levels and the reaction is analyzed in terms of the topology of potential energy surface. Approach of Cu⁺ towards methylamine could form either “classical” N or “nonclassical” η¹-methyl-H attached complex with the former being the global minimum. Both complexes are found to be key intermediates for the hydride abstraction, which could transfer into each other via two parallel routes, i.e., concerted metal movement and stepwise C-H activation-rearrangement. A charge-transfer process is detected for the “nonclassical” complex converting to a precursor species (CuH-NH₂CH₂⁺), which accounts for the final products by a nonreactive dissociation.     

EMIM离子液体离子簇模型的量子化学计算

以1-乙基-3-甲基咪唑(EMIM)卤化物、氟硼酸盐、三溴化物和二碘溴酸盐、氯铝酸和溴铝酸盐等不同种类EMIM离子液体为研究对象,对多阳离子、多阴离子的离子簇模型进行了量子化学计算研究.首先在B3LYP/6-311++G(d, p)水平上(I使用6-311G(d, p)基组)对{[EMIM]X_n}^(n-1)- (X = Cl, Br, I, BF₄, AlCl₄, AlBr₄, Br₃, IBrI, FHF; n = 2, 3)和{[EMIM]₂X_n'}^(n'-2)- (n' = 3, 4, 5)离子簇进行构型优化,并对卤化物和氟硼酸盐进行了振动光谱计算.结果表明所采用理论模型在键长、键角等结构参数及红外振动光谱方面均与实验结果符合较好.同时对不同离子簇模型中阴、阳离子间相互作用能与实验熔点之间的关系进行了研究,发现采用{[EMIM]₂X_n'}^(n'-2)--模型时EMIM离子液体实验熔点与阴、阳离子间相互作用能之间呈现近线性关系.     

配合物[Fe(CO)x(Ph2Ppy)y(HgCl2)z](x=3, 4; y=1, 2; z=0, 1, 2)的Fe-Hg相互作用及31P化学位移的理论研究

用密度泛函理论PBE0法计算配合物[Fe(CO)x(Ph2Ppy)y(HgCl2)z](1: x=4, y=1, z=0; 2: x=3, y=2, z=0; 3: x=4, y=1, z=1; 4: x=3, y=2, z=1; 5: x=4, y=1, z=2; 6: x=3, y=2, z=2)的几何构型, 用PBE0-GIAO法计算配合物1~6的31P化学位移. 计算结果表明, 含2个Ph2Ppy的配合物5和6的Fe—Hg相互作用略大于含单个Ph2Ppy的配合物3和4. 含2个HgCl2的配合物4和6存在Fe—Hg σ键, 比含单个HgCl2的配合物3和5的Fe—Hg相互作用强, 配合物3和5的Fe—Hg相互作用以Fe→Hg和Fe←Hg离域为主. 配合物3中Fe的负电荷比5的小, 故配合物5的Fe—Hg相互作用比配合物3的强且Fe→Hg离域比较显著, 而配合物3的Fe←Hg离域更显著. Fe—Hg相互作用增大了双核配合物中P核周围的电子密度, 其31P化学位移比相应的单核配合物小, 且含2个HgCl2的双核配合物的31P化学位移更小. 含单个Ph2Ppy的配合物的31P化学位移小于含2个Ph2Ppy的配合物.