The effects of microbial degradation on ignitable liquids

The identification of ignitable liquid residues in fire debris is a key finding for determining the cause and origin of a suspicious fire. However, the complex mixtures of organic compounds that comprise ignitable liquids are susceptible to microbiological attack following collection of the sample. Biodegradation can result in selective removal of many of the compounds required for identification of an ignitable liquid. Such degradation has been found to occur rapidly in substrates such as soil, rotting wood, or other organic matter. Furthermore, fire debris evidence must often be stored for extended periods at room temperature prior to analysis due to case backlogs and available evidence storage. Hence, extensive damage to ignitable liquid residues by microbes poses a significant threat to subsequent laboratory work. In this work, the effects of microbial degradation of ignitable liquids in soil have been evaluated as a function of time. Key findings include the loss of n-alkanes, particularly C₉–C₁₆, which showed the most dramatic decrease in gasoline as well as the petroleum distillates, while branched alkanes remained unchanged. Monosubstituted benzenes also showed the most dramatic loss in gasoline. In the heavy petroleum distillates, n-alkanes with even carbon numbers were degraded more than n-alkanes with odd carbon numbers. Figure A “fully involved” house fire in Indianapolis, IN

Study of acidified ignitable liquid residues in fire debris by solid‐phase microextraction with gas chromatography and mass spectrometry

The detection and identification of ignitable liquid residues in fire debris can be meaningful in fire investigations. However, background pyrolysis products and weathering hinder the identification and classification steps. In addition to those processes, the acidification of the ignitable liquids before the combustion process could make those tasks even more difficult. Nevertheless, there are no systematic studies assessing the extraction, analysis, and composition of acidified ignitable liquid residues obtained from fire debris. In this work, a method for the study of acidified ignitable liquid residues in fire debris by solid‐phase microextraction with gas chromatography and mass spectrometry is proposed. This methodology has been evaluated, first with simulated solutions (gasoline/sulfuric acid mixtures set on fire under controlled conditions), and then with analysis of samples from real fire debris obtained from 18 chemical ignition Molotov cocktails made with sulfuric acid and three different ignitable liquids (two types of gasoline and diesel fuel). In addition, the extensive modifications observed in chromatograms of acidified ignitable liquid residues regarding neat and weathered samples were studied. These alterations were produced by the combustion and acidification processes. As a consequence, tert‐butylated compounds are proposed as diagnostic indicators for the identification of acidified gasoline in fire debris, even in strongly weathered samples.     

Improved MALDI-TOF Microbial Mass Spectrometry Imaging by Application of a Dispersed Solid Matrix

The key step in high quality microbial matrix-assisted laser desorption/ionization mass spectrometry imaging (microbial MALDI MSI) is the fabrication of a homogeneous matrix coating showing a fine-grained morphology. This application note addresses a novel method to apply solid MALDI matrices onto microbial cultures grown on thin agar media. A suspension of a mixture of 2,5-DHB and α-CHCA is sprayed onto the agar sample surface to form highly homogeneous matrix coatings. As a result, the signal intensities of metabolites secreted by the fungus Aspergillus fumigatus were found to be clearly enhanced.

Oxygen consumption by conserved archaeological wood

Rates of oxygen consumption have been measured over extended time periods for 29 whole samples of conserved, archaeological wood and four samples of fresh, unconserved wood, at 50 % relative humidity and room temperature. Samples from the Swedish Warship Vasa and the Danish Skuldelev Viking ships are included. Most rates were close to 1 μg O₂ (g wood)^?1 day^?1 and the process persisted for several years at least. Consumption of oxygen is related to change in chemical composition, which is, in turn, related to degradation. It is thus demonstrated that despite conservation, waterlogged archaeological wood continues to degrade in a museum climate.

Data-Independent Microbial Metabolomics with Ambient Ionization Mass Spectrometry

Atmospheric ionization methods are ideally suited for prolonged MS/MS analysis. Data-independent MS/MS is a complementary technique for analysis of biological samples as compared to data-dependent analysis. Here, we pair data-independent MS/MS with the ambient ionization method nanospray desorption electrospray ionization (nanoDESI) for untargeted analysis of bacterial metabolites. Proof-of-principle data and analysis are illustrated by sampling Bacillus subtilis and Pseudomonas aeruginosa directly from Petri dishes. We found that this technique enables facile comparisons between strains via MS and MS/MS plots which can be translated to chemically informative molecular maps through MS/MS networking. The development of novel techniques to characterize microbial metabolites allows rapid and efficient analysis of metabolic exchange factors. This is motivated by our desire to develop novel techniques to explore the role of interspecies interactions in the environment, health, and disease. This is a contribution to honor Professor Catherine C. Fenselau in receiving the prestigious ASMS Award for a Distinguished Contribution in Mass Spectrometry for her pioneering work on microbial mass spectrometry.

Spectral signatures for the classification of microbial species using Raman spectra

In general, classification-based methods based on confocal Raman microscopy are focused on targeted studies under which the spectral libraries are collected under controlled instrument parameters, which facilitate analyses via standard multivariate data analysis methods and cross-validation. We develop and compare approaches to transform spectra collected at different spectral ranges and varying levels of resolution into a single lower-dimension spectral signature library. This will result in a more robust analysis method able to accommodate spectra accumulated at different times and conditions. We demonstrate these approaches on a relevant test case; the identification of microbial species from a natural environment. The training data were based on samples prepared for three unique species collected at two time points and the test data consisted of blinded unknowns prepared and analyzed at a later date with different instrument parameters. The results indicate that using reduced dimension representations of the spectral signatures improves classification accuracy over basic alignment protocols. In particular, utilizing the microbial species partial least squares discriminant analysis classifier on the blinded samples based on alignment achieved ~78 % accuracy, while both binning and peak selection approaches yielded 100 % accuracy.

Microstructure elucidation of historic silk (Bombyx mori) by nuclear magnetic resonance

¹H NMR cryoporometry and solid-state ¹³C cross-polarization (CP) magic-angle spinning (MAS) NMR spectroscopy were used to characterize the microstructure of historic and fresh silk samples. Silk is a polymeric bicomponent material composed of fibroin and water located in micropores. According to the ¹H NMR cryoporometry method, the intensity of the water resonance as a function of the temperature was used to obtain the pore size distribution, which was strongly asymmetric with a well-defined maximum at 1.1 nm. Compared with the fresh silk samples, the volume of pores around 1.1 nm decreased distinctly in the historic silk, and more pores larger than 2 nm emerged accordingly. In addition, these results correlated well with solid-state ¹³C CP/MAS NMR spectroscopy as the percentage of random coil in the historic silk sample was much less than that in the fresh silk samples. Therefore, it is suggested that the water-filled microvoids grow larger as the random coil conformation fades away in the degradation process.

Preconcentration of metal ions using microbacteria

This review (160 refs). covers the current state of the art of microbacteria-based sorbents for preconcentration of metal ions at trace levels. We highlight advantages and major challenges of the techniques and discuss future perspectives of both batch and column-based methods. Particular attention is paid to the preconcentration of metal ions using resin-immobilized microbacteria for solid phase extractions. We also discuss detection methods including UV–vis spectrophotometry, FAAS, ICP-OES and ICP-MS. Analytical figures of merit are compared, and examples are given for the application to a variety of samples including food, beverages, alloys, water, soil, and geological samples.

Identifying indoor environmental patterns from bioaerosol material using HPLC

A substantial portion of the atmospheric particle budget is of biological origin (human and animal dander, plant and insect debris, etc.). These bioaerosols can be considered information-rich packets of biochemical data specific to the organism of origin. In this study, bioaerosol samples from various indoor environments were analyzed to create identifiable patterns attributable to a source level of occupation. Air samples were collected from environments representative of human high-traffic- and low-traffic indoor spaces along with direct human skin sampling. In all settings, total suspended particulate matter was collected and the total aerosol protein concentration ranged from 0.03 to 1.2 μg/m³. High performance liquid chromatography was chosen as a standard analysis technique for the examination of aqueous aerosol extracts to distinguish signatures of occupation compared to environmental background. The results of this study suggest that bioaerosol “fingerprinting” is possible with the two test environments being distinguishable at a 97 % confidence interval.

Sample loading and retrieval by centrifugation in a closed-loop PCR microchip

We report on a novel concept of sample loading for microfluidic devices using a benchtop centrifuge and a magnetically actuated circular closed-loop PCR microchip as a model system. The PCR mixture and the ferrofluid were loaded into a specially designed microchip. The microchip was then placed in an off-the-shelf 50-mL tube and centrifuged. The strong centrifugal force drives the PCR mixture and the ferrofluid into the microchannels of the microchip, and simultaneously expels any trapped microbubbles. PCR was successfully carried out on single and parallel closed-loop PCR microchips. The addition of a few off-chip handling steps allows great simplification of the device design. This new loading concept may be useful for designing robust and low-cost lab-on-a-chip devices because benchtop centrifuges are quite common in most laboratories.

Sensitive and simplified analysis of natural and synthetic steroids in water and solids using on-line solid-phase extraction and microwave-assisted solvent extraction coupled to liquid chromatography tandem mass spectrometry atmospheric pressure photoionization

Analytical methods for the determination of several natural and synthetic steroids in water and solid samples were developed using liquid chromatography tandem mass spectrometry. Atmospheric pressure photoionization (APPI) in positive mode was used as the source which appeared to reduce background and interferences as compared to electrospray ionization. Toluene was identified as the most appropriate dopant and its concentration optimized to enhance ionization efficiency. Method detection limits were in the low-nanogram-per-liter range for water samples using on-line solid-phase extraction and near 0.2 ng/g using microwave-assisted solvent extraction for solid samples. This on-line method, using APPI as a source and toluene as a dopant, is beneficial as it saves time due to on-line extraction and reduces interference and matrix effects using gas-phase photoionization. Groundwater, wastewater, runoff, and soil samples were collected and analyzed using the method indicating that traces of several androgens, estrogens, and other steroid-like compounds do occur in samples impacted by animal waste.

Pharmaceutical Analysis by Solid-Substrate Electrospray Ionization Mass Spectrometry with Wooden Tips

Electrospray ionization (ESI) using wooden tips as solid substrates allows direct ionization of various samples and their simple and efficient analyses by mass spectrometry (MS). In this study, wooden-tip ESI-MS was used for pharmaceutical analysis. A wide variety of active components present in pharmaceuticals with forms of tablets, capsules, granules, dry suspensions, suspensions, drops, and oral liquids, etc., were all successfully ionized directly for mass spectrometric analysis. Trace degradation products were also sensitively detected using wooden-tip ESI-MS. This strategy was extended to construct chemical fingerprints of herbal products containing complex and unknown components, and the fingerprints provided valuable information for their quality assessment and origin tracing. Our experimental data demonstrated that wooden-tip ESI-MS is a useful tool for rapid pharmaceutical analysis, with high sensitivity and wide applicability, showing promising perspectives for quality assessment and control, authentication, and origin tracing of pharmaceuticals.

Cryo ultra-low-angle microtomy for XPS-depth profiling of organic coatings

In X-ray photoelectron spectroscopy (XPS) Ar⁺ ion sputtering is usually used for depth profiling. However, for such samples as organic coatings, this is not feasible because of degradation. Also, measurement of a depth profile on a conventionally prepared cross-section is not possible if, for example, sample thickness is below the smallest available measurement spot size of the XPS system. In our approach we used a rotary microtome to cut samples under a shallow tilting angle of 0.5° to obtain an extended cross-section suitable for XPS investigations. We also used liquid nitrogen cooling to ensure an exposed area of higher quality: topography measurements with a novel optical 3D microscope and by atomic force microscopy revealed the linearity of the inclined sections. With our cryo ultra-low-angle microtomy (cryo-ULAM) preparation technique we were able to determine, by XPS, elemental and chemical gradients within a 25 μm thick polyester-based organic coating deposited on steel. The gradients were related to, for example, depletion of the crosslinking agent in the sub-surface region. Complementary reflection electron energy-loss spectroscopy measurements performed on the cryo-ULAM sections also support the findings obtained from the XPS depth profiles.

Thin layer chromatography–spray mass spectrometry: a method for easy identification of synthesis products and UV filters from TLC aluminum foils

A straightforward procedure for direct mass spectrometric (MS) analysis of spots from thin layer chromatography (TLC) plates, without the need of an external ion source, was developed using the aluminum plate backing as spray tip. The spots were cut out shaped as a tip with a 60° angle, mounted in front of the MS orifice, and after addition of a spray solvent spectra were obtained immediately. A high-resolution time-of-flight MS was used since the method is of particular interest for rapid identification or confirmation of spots from TLC plates. The practical benefits of this technique were demonstrated by detection of by-products of organic reactions, by identification of degradation products, and by accurate confirmation of spots when UV filters in sunscreens were analyzed by TLC. Employing the described method TLC spots can be evaluated fast without the need of an external ion source or devices for analyte transfer from TLC to MS, only a basic MS instrument and a high-voltage power supply is required.

Spectral Reproducibility and Quantification of Peptides in MALDI of Samples Prepared by Micro-Spotting

Previously, we reported that MALDI spectra of peptides became reproducible when temperature was kept constant. Linear calibration curves derived from such spectral data could be used for quantification. Homogeneity of samples was one of the requirements. Among the three popular matrices used in peptide MALDI [i.e., α-cyano-4-hydroxycinnamic acid (CHCA), 2,5-dihydroxybenzoic acid (DHB), and sinapinic acid (SA)], homogeneous samples could be prepared by conventional means only for CHCA. In this work, we showed that sample preparation by micro-spotting improved the homogeneity for all three cases.

LC-MS/TOF, LC-MSn, on-line H/D exchange and LC-NMR studies on rosuvastatin degradation and in silico determination of toxicity of its degradation products: a comprehensive approach during drug development

The present study dealt with the forced degradation behaviour of rosuvastatin under ICH prescribed stress conditions. The drug was found to be labile under acid hydrolytic and photolytic conditions, while it was stable to base/neutral hydrolytic, oxidative and thermal stress. In total, 11 degradation products were formed, which were separated on a C-18 column using a stability-indicating method. LC-MS analyses indicated that five degradation products had the same molecular mass as that of the drug, while the remaining six had 18 Da less than the drug. Structure elucidation of all the degradation products was executed using sophisticated and modern structural characterization tools, viz. LC-MS/TOF, LC-MSⁿ, on-line H/D exchange and LC-NMR. The degradation pathway and mechanisms of degradation of the drug were delineated. Additionally, in silico toxicity was predicted for all the degradation products using TOPKAT and DEREK software and compared with the drug. This study demonstrates a comprehensive approach of degradation studies during the drug development phase.

Comparison of two different multidimensional liquid–gas chromatography interfaces for determination of mineral oil saturated hydrocarbons in foodstuffs

This investigation focused on direct comparison of two popular multidimensional liquid–gas chromatography (LC–GC) systems, the Y-interface (retention gap approach) and the syringe-based interface (programmed temperature vaporizer approach). Such transfer devices are structurally very different, and could potentially have a substantial effect on the outcome of a specific application. In this work the application was a topic of much current interest, determination of mineral oil saturated hydrocarbon (MOSH) contamination of a series of food products (rice, pasta, icing sugar, olive oil); the final results were then compared. The two LC–GC methods developed were validated for linearity over the calibration range, analyte discrimination, precision, accuracy, and limits of detection and quantification. No significant differences were found between the two approaches.

Direct Electrospray Ionization Mass Spectrometric Profiling of Real-World Samples via a Solid Sampling Probe

This study presents a novel direct analysis strategy for rapid mass spectrometric profiling of biochemicals in real-world samples via a direct sampling probe (DSP) without sample pretreatments. Chemical modification is applied to a disposable stainless steel acupuncture needle to enhance its surface area and hydrophilicity. After insertion into real-world samples, biofluid can be attached on the DSP surface. With the presence of a high DC voltage and solvent vapor condensing on the tip of the DSP, analyte can be dissolved and electrosprayed. The simplicity in design, versatility in application aspects, and other advantages such as low cost and disposability make this new method a competitive tool for direct analysis of real-world samples.

Analysis of flame retardants and elements of concern in printed wiring boards with respect to origin and year of construction

Thirty-one populated printed wiring boards, covering a range of 30 years of construction, and originating from various electronic devices, were investigated using different analytical procedures. Noble, precious and rare metals, as well as environmentally relevant elements were identified by EDXRF, and lead and the flame retardant (FR) indicator bromine were localised by means of microbeam EDXRF. A GC/MS procedure was developed to identify and quantify FR substances. Several sample preparation techniques were applied, optimised and compared. The method of first choice was ultrasonic extraction because it provided the best compromise between effort, cost and quality of the analytical results. Altogether, a wide variety of elements of concern, and halogenated and phosphate-based FRs were found in the investigated boards. Their occurrence is partially related to the origin and/or year of construction.