One-dimensional supramolecular organization of single-molecule magnets

An out-of-plane dimeric MnIII quadridentate Schiff-base compound, [Mn2(salpn)2(H2O)2](ClO4)2 (salpn(2-) = N,N'-(propane)bis(salicylideneiminate)), has been synthesized and structurally characterized. The crystal structure reveals that the [Mn2(salpn)2(H2O)2](2+) units are linked through weak H-bonds (OHwater...OPh) in one dimension along the c-axis, forming supramolecular chains. The exchange interaction between MnIII ions via the biphenolate bridge is ferromagnetic (J/kB = +1.8 K), inducing an ST = 4 ground state. This dinuclear unit possesses uni-axial anisotropy observed in the out-of-plane direction with DMn2/kB = -1.65 K. At low temperatures, this complex exhibits slow relaxation of its magnetization in agreement with a single-molecule magnet (SMM) behavior. Interestingly, the intermolecular magnetic interactions along the one-dimensional organization, albeit weak (J'/kB = -0.03 K), influence significantly the thermally activated and quantum dynamics of this complex. Thus, unique features such as M vs H data with multiple steps, hysteresis effects, and peculiar relaxation time have been explained considering SMMs in small exchange-field perturbations and finite-size effects intrinsic to the chain arrangement. The magnetic properties of this new complex can be regarded as an intermediate behavior between SMM and single-chain magnet (SCM) properties.     

Photoreversible supramolecular polymerisation and hierarchical organization of hydrogen-bonded supramolecular co-polymers composed of diarylethenes and oligothiophenes

Diarylethene 1 equipped with two monotopic melamine hydrogen-bonding sites and oligothiophene-functionalized ditopic cyanurate (OTCA) were mixed in a nonpolar solvent to form AA-BB-type supramolecular co-polymers (SCPs) bearing photoswitchable moieties in their main chains and extended π systems as side chains. UV/Vis, fluorescence, dynamic light scattering (DLS), TEM, and AFM studies revealed that the two functional co-monomers formed flexible quasi-one-dimensional SCPs in solution that hierarchically self-organized into helical nanofibers through H-aggregation of the oligothiophene side chains. Upon irradiating the SCPs with UV light, a transition occurred from the H-aggregated state to non-aggregated monomeric oligothiophene side chains, as shown by spectroscopic studies, which indicates the formation of small oligomeric species held together only by hydrogen-bonding interactions. TEM and AFM visualized unfolded fibrils corresponding to elongated single SCP chains formed upon removal of solvent. The helical nanofibers were regenerated upon irradiating the UV-irradiated solution with visible light. These results demonstrated that the supramolecular polymerisation followed by hierarchical organization can be effectively controlled by proper supramolecular designs using diarylethenes and π-conjugated oligomers.     

Crystal structure and two-level supramolecular organization of glycinium triiodide

Glycinium triiodide was synthesized and its crystal structure was determined. The crystal structure consists of alternating asymmetric triiodide anions characterized by Raman spectroscopy and glycinium cations. The cations and anions form dimers (GlyH)₂(I₃)₂via (N)H···O, (N)H···I, and (O)H···I hydrogen bonds. The dimers are further linked into chains by secondary I···I interactions between adjacent triiodide anions. The supramolecular structure of glycinium triiodide is discussed in comparison with polyiodides of various cations.

     

Ferrocenoyl glycylcystamine: organization into a supramolecular helicate structure

Extensive intermolecular hydrogen bonding in ferrocenoyl glycylcystamine gives rise to a novel ordered double helical arrangement with a helical pitch height of 14 A.     

Self-sorting organization of two heteroditopic monomers to supramolecular alternating copolymers

Self-sorting organization of two AB-type heteroditopic monomers led to the formation of linear supramolecular alternating copolymers driven by host-guest noncovalent interactions based on the bis(p-phenylene)-34-crown-10/paraquat derivative and dibenzo-24-crown-8/dibenzylammonium salt recognition motifs as confirmed by 1H NMR, cyclic voltammetry, dynamic light scattering, viscosity measurements, and scanning electron microscopy.     

New supramolecular organization for a glycoluril: chiral hydrogen-bonded ribbons

A series of substituted glycoluril molecules exhibits a substantial twist of the fused five-membered rings and assembles exclusively chiral hydrogen-bonded ribbons in the solid-state.     

Nanochannels: hosts for the supramolecular organization of molecules and complexes

Nanochannels have been used as hosts for supramolecular organization for a large variety of guests. The possibilities for building complex structures based on 2D and especially 3D nanochannel hosts are larger than those based on 1D nanochannel hosts. The latter are, however, easier to understand and to control. They still give rise to a rich world of fascinating objects with very distinguished properties. Important changes are observed if the channel diameter becomes smaller than 10 nm. The most advanced guest-nanochannel composites have been synthesized with nanochannels bearing a diameter of about 1 nm. Impressive complexity has been achieved by interfacing these composites with other objects and by assembling them into specific structures. This is explained in detail. Guest-nanochannel composites that absorb all light in the right wavelength range and transfer the electronic excitation energy via FRET to well-positioned acceptors offer a unique potential for developing FRET-sensitized solar cells, luminescent solar concentrators, color-changing media, and devices for sensing in analytical chemistry, biology, and diagnostics. Successful 1D nanochannel hosts for synthesizing guest-host composites have been zeolite-based. Among them the largest variety of guest-zeolite composites with appealing photochemical, photophysical, and optical properties has been prepared by using zeolite L (ZL) as a host. The reasons are the various possibilities for fine tuning the size and morphology of the particles, for inserting neutral molecules and cations, and for preparing rare earth complexes inside by means of the ship-in-a-bottle procedure. An important fact is that the channel entrances of ZL-based composites can be functonalized and completely blocked, if desired, and furthermore that targeted functionalization of the coat is possible. Different degrees of organizational levels and prospects for applications are discussed, with special emphasis on solar energy conversion devices.     

Structural determinants of the supramolecular organization of G protein-coupled receptors in bilayers

The G protein-coupled receptor (GPCR) rhodopsin self-assembles into supramolecular structures in native bilayers, but the structural determinants of receptor oligomerization are not known. We carried out multiple self-assembly coarse-grained molecular dynamics (CGMD) simulations of model membranes containing up to 64 molecules of the visual receptor rhodopsin over time scales reaching 100 μs. The simulations show strong preferential interaction modes between receptors. Two primary modes of receptor-receptor interactions are consistent with umbrella sampling/potential of mean force (PMF) calculations as a function of the distance between a pair of receptors. The preferential interfaces, involving helices (H) 1/8, 4/5 and 5, present no energy barrier to forming a very stable receptor dimer. Most notably, the PMFs show that the preferred rhodopsin dimer exists in a tail-to-tail conformation, with the interface comprising transmembrane H1/H2 and amphipathic H8 at the extracellular and cytoplasmic surfaces, respectively. This dimer orientation is in line with earlier electron microscopy, X-ray, and cross-linking experiments of rhodopsin and other GPCRs. Less stable interfaces, involving H4 and H6, have a free energy barrier for desolvation (delipidation) of the interfaces and appear to be designed to stabilize "lubricated" (i.e., lipid-coated) dimers. The overall CGMD strategy used here is general and can be applied to study the homo- and heterodimerization of GPCRs and other transmembrane proteins. Systematic extension of the work will deepen our understanding of the forces involved in the membrane organization of integral membrane proteins.     

Molecular and supramolecular organization of star-shaped C60-fullerene-containing polyethylene oxide in benzene

The molecular properties and self-organization of star-shaped fullerene-containing polyethylene oxide in benzene were studied by methods of molecular hydrodynamics and small-angle neutron scattering.     

Investigation of the origin of selectivity in cavitand-based supramolecular sensors

The sensing properties of functionalized cavitands have been studied by thin-film coating TMSR chemical sensors and by measuring their responses towards model analytes. We studied the relationship between the sensor performance, in terms of sensitivity and selectivity, and the molecular recognition properties of the cavitands. The Langmuir-like shape of the adsorption isotherm, obtained in the case of short-chain alcohols, demonstrated that selective binding can be achieved by the synergistic interactions of the cavity and the bridging PO(in) groups. In the absence of these substituents, the peripheral alkyl chains necessary for the formation of highly permeable thin films attenuate the cavity effect because of nonspecific dispersion interactions. This completely overrides the response originating from molecular recognition. The same effect is observed when the PO groups are oriented outward from the cavity. The use of multivariate chemometrics and the study of the correlations between sensors sensitivity and analyte properties provided further evidence of molecular recognition phenomena, whose intensity is enhanced by the permanent free volume created by the rigid cavity surrounding the PO(in) group.     

Investigation of the supramolecular structure of never dried bacterial cellulose

Supramolecular structure of initially wet bacterial cellulose of Acetobacter xylinum has been investigated by X-ray scattering including synchrotron radiation, transmission electron microscopy, and ¹³C-CP/MAS-NMR-spectroscopy. As a result a model is given of never dried swollen microfibrillar ribbons consisting of 5 to 12 waterfree I_α-crystalline subunits with a cross-section of about 7 nm × 13 nm and of water solvating the subunits. Lateral aggregation of these crystalline units was found along the smaller (110)-lattice planes with a layer of water between adjacent crystallites. The NMR-spectrum of wet bacterial cellulose exhibits an additional C-1 line component indicating cellulose-water interactions. During drying lateral dimensions of the microfibrillar ribbons, crystallite sizes, as well as the overall crystalline order decrease, whereas the Iα/Iβ-ratio of about 80/20 remains approximately unchanged. Conclusions were drawn with regard to the early states of structure formation of bacterial cellulose.     

Effect of supramolecular organization of a cartilaginous tissue on thermal stability of collagen II

The thermal stability of collagen II in various cartilaginous tissues was studied. It was found that heating a tissue of nucleus pulposus results in collagen II melting within a temperature range of 60–70°C; an intact tissue of hyaline cartilage (of nasal septum and cartilage endplates) is a thermally stable system, where collagen II is not denatured completely up to 100°C. It was found that partial destruction of glycosaminoglycans in hyaline cartilage leads to an increase in the degree of denaturation of collagen II upon heating, although a significant fraction remains unchanged. It was shown that electrostatic interactions of proteoglycans and collagen only slightly affect the thermal stability of collagen II in the tissues. Evidently, proteoglycan aggregates play a key role: they create topological hindrances for moving polypeptide chains, thereby reducing the configurational entropy of collagen macromolecules in the state of a random coil.     

An optically-active liquid-crystalline hexa-adduct of [60]fullerene which displays supramolecular helical organization

Polyaddition of mesogenic moieties to C60 were found to yield chiral supermolecular nanoparticles which exhibit iridescent helical chiral nematic phases.     

Influence of the preparation route on the supramolecular organization of lipids in a vesicular system

A confocal fluorescence microscopy-based assay was used for studying the influence of the preparation route on the supramolecular organization of lipids in a vesicular system. In this work, vesicles composed of cholesterol and CTAB (1/1 mol %) or cholesterol and DOPC (2/8 mol %) and incorporating two membrane dyes were prepared by either a compressed fluid (CF)-based method (DELOS-susp) or a conventional film hydration procedure. They were subsequently immobilized and imaged individually using a confocal fluorescence microscope. Two integrated fluorescence intensities, I(dye1) and I(dye2), were assigned to each tracked vesicle, and their ratio, I(dye1)/I(dye2), was used for quantifying the degree of membrane inhomogeneity between individual vesicles within each sample. A distribution of I(dye1)/I(dye2) values was obtained for all the studied vesicular systems, indicating intrasample heterogeneity. The degree of inhomogeneity (DI) was similar for Chol/DOPC vesicles prepared by both procedures. In contrast, DI was more than double for the hydration method compared to the CF-based method in the case of Chol/CTAB vesicles, which can suffer from lipid demixing during film formation. These findings reveal a more homogeneous vesicle formation path by CFs, which warranted good homogeneity of the vesicular system, independently of the lipid mixture used.     

Cyclic tetra- and hexaynes containing 1,4-donor-substituted butadiyne units: synthesis and supramolecular organization

Cyclic bis(1,3-butadiynes) with sulfur centers placed in the alpha-position to the 1,3-butadiyne units (2(n)) were synthesized by Glaser coupling of the corresponding open chain dithia-alpha,omega-diynes 1(n). In a second protocol we applied a four-component cyclization by reacting alpha,omega-dithiocyanatoalkanes 6(n) or alpha,omega-diselenocyanatoalkanes 7(n) with dilithium-1,3-butadiynide. This concept afforded either the cyclic dimers (S, 2(n); Se, 9(n)) or the cyclic trimers (S, 8(n); Se, 10(n)). Most of the molecular structures of 2(n) and 9(n) adopt chairlike conformations in the solid state. Tubular structures in the solid state with short distances between the chalcogen centers of neighboring stacks were encountered for 2(5), 9(5), 8(4), 10(4), and 10(5). Recrystallization of 10(5) from various polar and nonpolar solvents yielded inclusion of the solvent guest molecules. The solvent-accessible volume was calculated to vary from 19% (n-hexane) to 25% (mesitylene). The elastic properties of our cycles are due to the flexible methylene chains and the easily variable torsional angles between the rigid 1,3-butadiyne rods.