Applications of Terahertz Spectroscopy in Biosystems

Terahertz (THz) spectroscopic investigations of condensed‐phase biological samples are reviewed ranging from the simple crystalline forms of amino acids, carbohydrates and polypeptides to the more complex aqueous forms of small proteins, DNA and RNA. Vibrationally resolved studies of crystalline samples have revealed the exquisite sensitivity of THz modes to crystalline order, temperature, conformational form, peptide sequence and local solvate environment and have given unprecedented measures of the binding force constants and anharmonic character of the force fields, properties necessary to improve predictability but not readily obtainable using any other method. These studies have provided benchmark vibrational data on extended periodic structures for direct comparisons with classical (CHARMm) and quantum chemical (density functional theory) theories. For the larger amorphous and/or aqueous phase samples, the THz modes form a continuum‐like absorption that arises because of the full accessibility to conformational space and/or the rapid time scale for inter‐conversion in these environments. Despite severe absorption by liquid water, detailed investigations have uncovered the photo‐ and hydration‐induced conformational flexibility of proteins, the solvent shell depth of the water/biomolecule boundary layers and the solvent reorientation dynamics occurring in these interfacial layers that occur on sub‐picosecond time scales. As such, THz spectroscopy has enhanced and extended the accessibility to intermolecular forces, length‐ and timescales important in biological structure and activity.     

Upper Critical Solution Temperature‐Type Thermal Response of Soluble Multi‐l‐Arginyl‐Poly‐l‐Aspartic Acid (cyanophycin) Conjugated with Maltodextrin

Multi‐l ‐arginyl‐poly‐l ‐aspartic acid (MAPA), also known as cyanophycin, can incorporate lysine into the side‐chain position of arginine when being prepared with recombinant Escherichia coli. The soluble fraction (sMAPA) is known to display both lower critical solution temperature (LCST) and upper critical solution temperature (UCST) responses at the physiological condition. In an attempt to alter the UCST thermal response, maltodextrin was employed to conjugate onto the amine group of lysine of sMAPA via the formation of Schiff base. In phosphate buffered saline, the UCST of the conjugates appeared around 50–62°C, depending on the extent of conjugation. In contrast to the unmodified sMAPA, the UCST of the conjugate became independent of pH ranging from 1 to 11. Heating the conjugate solution to complete transparent caused a delayed and partial recovery of the original turbidity during subsequent cooling. However, the turbidity can be restored by further precipitation with ethanol or isopropanol followed lyophilization and re‐dissolution. At room temperature, below UCST, the agglomerates exhibited a size of around 200–400 nm under TEM and DLS. © 2019 Wiley Periodicals, Inc. J. Polym. Sci., Part A: Polym. Chem. 2019, 57, 2048–2055     

Investigation of (1R,2S)‐(−)‐Ephedrine by Cryogenic Terahertz Spectroscopy and Solid‐State Density Functional Theory

The terahertz (THz) spectrum of the pharmaceutical (1R,2S)‐(?)‐ephedrine from 8.0 to 100.0 cm^?1 is investigated at liquid‐nitrogen (78.4 K) temperature. The spectrum exhibits several distinct features in this range that are characteristic of the crystal form of the compound. A complete structural analysis and vibrational assignment of the experimental spectrum is performed using solid‐state density functional theory (DFT) and cryogenic single‐crystal X‐ray diffraction. Theoretical modeling of the compound includes an array of density functionals and basis sets with the final assignment of the THz spectrum performed at a PW91/6‐311G(d,p) level of theory, which provides excellent solid‐state simulation agreement with experiment. The solid‐state analysis indicates that the seven experimental spectral features observed at low temperature consist of 13 IR‐active vibrational modes. Of these modes, nine are external crystal vibrations and provide approximately 57 % of the predicted spectral intensity. This study demonstrates that the THz spectra of complex pharmaceuticals may be well reproduced by solid‐state DFT calculations and that inclusion of the crystalline environment is necessary for realistic and accurate simulations.     

Terahertz Time‐Domain Spectroscopy of Gases,Liquids, and Solids

The techniques and methods employed in the spectroscopic characterization of gases, liquids, and solids in the terahertz frequency range are reviewed. Terahertz time‐domain spectroscopy is applied to address a broadband frequency range between 100 GHz and 5 THz with a sub‐10 GHz frequency resolution. The unique spectral absorption features measured can be efficiently used in material identification and sensing. Possibilities and limitations of fundamental and industrial applications are discussed.     

高性能和强扩展性的太赫兹时域光谱仪的研制

太赫兹波具有低能、宽带和独特的时域脉冲特性等特点,使其在材料物质科学领域具有着重要的应用价值.自主搭建了一套基于光电导天线的太赫兹时域光谱仪.从介绍光电导天线产生和探测太赫兹波的原理出发,重点阐述了太赫兹时域光谱仪的光路设计优化、搭建调试、功能拓展和应用实例分析,为自主研制高性能太赫兹时域光谱仪提供了方法和经验.     

Extending the Scope of Singlet‐State Spectroscopy

Different decoupling sequences are tested—using various shaped radio‐frequency (RF) pulses—to achieve the longest possible lifetimes of singlet‐state populations over the widest possible bandwidths, that is, ranges of offsets and relative chemical shifts of the nuclei involved in the singlet states. The use of sinc or refocusing broadband universal rotation pulses (RE‐BURP) for decoupling during the intervals where singlet‐state populations are preserved allows one to extend the useful bandwidth with respect to prior state‐of‐the‐art methods based on composite‐pulse WALTZ decoupling. The improved sinc decoupling sequences afford a more reliable and sensitive measure of the lifetimes of singlet states in pairs of spins that have widely different chemical shifts, such as the two aromatic protons H⁵ and H⁶ in uracil. Similar advantages are expected for nucleotides in RNA and DNA. Alternative approaches, in particular frequency‐modulated decoupling sequences, also appear to be effective in preserving singlet‐state populations, even though the profiles of the apparent relaxation rate constants as a function of the offset are somewhat perturbed. The best decoupling sequences prove their utility in sustaining longer lifetimes of singlet states than previously achieved for the side‐chain tyrosine protons in bovine pancreatic trypsin inhibitor (BPTI) at 600 MHz (14.1 T), where the differences of chemical shifts between coupled protons are a challenge.     

太赫兹技术在药物化学研究领域中的应用*

太赫兹(THz)技术及其应用研究近些年发展迅速,许多研究表明该技术在国防安全、信息通信、材料、环境、化学和生物医学等领域有巨大的应用前景。本文就近年来利用太赫兹光谱和太赫兹成像技术在药物化学领域中的应用研究进行综述。介绍了太赫兹时域光谱技术（THz-TDS）在药物活性成分（Active Pharmaceutical Ingredients, APIs）的检测、异构体的区分、药物的多晶型和假多晶型的鉴别以及混合物的定性与定量分析等方面取得的研究成果和进展;阐述了太赫兹成像技术在分析药物的物理化学性质和包衣膜厚度、密度、结构特性,以及监测产品的一致性和完整性方面的应用优势。此外,还介绍了太赫兹技术在药物动力学研究及药物生产过程分析中的创新性应用研究。     

Solid‐state NMR and EPR Spectroscopy of Mn2+‐Substituted ATP‐Fueled Protein Engines

Paramagnetic metal ions deliver structural information both in EPR and solid‐state NMR experiments, offering a profitable synergetic approach to study bio‐macromolecules. We demonstrate the spectral consequences of Mg²⁺/ Mn²⁺ substitution and the resulting information contents for two different ATP:Mg²⁺‐fueled protein engines, a DnaB helicase from Helicobacter pylori active in the bacterial replisome, and the ABC transporter BmrA, a bacterial efflux pump. We show that, while EPR spectra report on metal binding and provide information on the geometry of the metal centers in the proteins, paramagnetic relaxation enhancements identified in the NMR spectra can be used to localize residues at the binding site. Protein engines are ubiquitous and the methods described herein should be applicable in a broad context.     

Terahertz properties of liquid crystals doped with ferroelectric BaTiO3 nanoparticles

In this paper, we present the results of the terahertz measurements of liquid crystal (LC) ferroelectric BaTiO₃ nanoparticles (nps) suspensions in the range of frequency from 0.3 up to 3.0 THz. Two different sol-gel methods and the harvesting technique were used to fabricate the nanoparticles. Five LC materials served as hosts for the suspensions: two single compounds: 6CHBT and 2,3′,5′-trifluoro-4-(4-pentylcyclohexyl)-4′-(trifluoromethoxy)-1,1′-biphenyl, and three mixtures: 1867, 2037 and 2020. We characterise, for the first time, the refractive indices and absorption parameters of suspensions with harvested nps in the terahertz range and show how the process of the nps’ preparation affects their response. We observed the increase of birefringence for few LC suspensions in comparison with the pure LCs. The highest increase of birefringence was for 2020 suspension with one kind of ferroelectric nps. On the other hand in most cases the addition of ferroelectric nps to LC causes the increase of its absorption in the THz range. The measurements of LCs terahertz properties by using time-pulsed spectrometer were performed.     

Structural Properties and Stereochemically Distinct Folding Preferences of 4,5‐cis and trans‐Methano‐L‐Proline Oligomers: The Shortest Crystalline PPII‐Type Helical Proline‐Derived Tetramer

The synthesis, structural properties, and folding patterns of a series of L ‐proline methanologues represented by cis‐ and trans‐4,5‐methano‐L ‐proline amides and their oligomers are reported as revealed by X‐ray crystallography, circular dichroism measurements, and DFT calculations. We disclose the first example of a crystalline tetrameric proline congener to exhibit a polyproline II helical conformation. Experimental evidence of PPII‐type helical arrangement (both in solution and in the solid state) of cis‐4,5‐methano‐L ‐proline oligomers is supported by theoretical calculations reflecting the extent of n→π* stabilization of the trans‐amide conformation.     

PELDOR Spectroscopy Distance Fingerprinting of the Octameric Outer‐Membrane Protein Wza from Escherichia coli.

Distance fingerprinting : Pulsed electron–electron double resonance spectroscopy (PELDOR) is applied to the octameric membrane protein complex Wza of E. coli. The data yielded a detailed distance fingerprint of its periplasmic region that compares favorably to the crystal structure. These results provide the foundation to study conformation changes from interaction with partner proteins.