Optomechanical Control of Quantum Yield in Trans–Cis Ultrafast Photoisomerization of a Retinal Chromophore Model

The quantum yield of a photochemical reaction is one of the most fundamental quantities in photochemistry, as it measures the efficiency of the transduction of light energy into chemical energy. Nature has evolved photoreceptors in which the reactivity of a chromophore is enhanced by its molecular environment to achieve high quantum yields. The retinal chromophore sterically constrained inside rhodopsin proteins represents an outstanding example of such a control. In a more general framework, mechanical forces acting on a molecular system can strongly modify its reactivity. Herein, we show that the exertion of tensile forces on a simplified retinal chromophore model provokes a substantial and regular increase in the trans ‐to‐cis photoisomerization quantum yield in a counterintuitive way, as these extension forces facilitate the formation of the more compressed cis photoisomer. A rationale for the mechanochemical effect on this photoisomerization mechanism is also proposed.     

Dependence of Photochemical Reactivity of the All-trans Retinal Protonated Schiff Base on the Solvent and the Excitation Wavelength

An all-optical experimental technique aimed at measuring photoisomerization quantum yield (ϕ) of the all-trans protonated Schiff base of retinal in solution has been implemented. Upon the increase in the excitation wavelength from 400 to 540 nm a slight increase in ϕ from 0.16 ± 0.03 to 0.20 ± 0.02 is observed in the chromophore dissolved in methanol, whereas the ϕ value of the one dissolved in acetonitrile varies only from 0.22 ± 0.03 (400 nm) to 0.23 ± 0.04 (540 nm). The results suggest that dissipation of the excited-state vibrational energy excess, along with environment-induced modifications of the potential energy surfaces are necessary for an efficient retinal photoisomerization in both solvent and protein environment.     

Reaction path analysis of the "tunable" photoisomerization selectivity of free and locked retinal chromophores

Multiconfigurational second-order perturbation theory computations and reaction path mapping for the retinal protonated Schiff base models all-trans-nona-2,4,6,8-tetraeniminium and 2-cis-nona-2,4,6,8-tetraeniminium cation demonstrate that, in isolated conditions, retinal chromophores exhibit at least three competing excited-state double bond isomerization paths. These paths are associated with the photoisomerization of the double bonds in positions 9, 11, and 13, respectively, and are controlled by barriers that favor the position 11. The computations provide a basis for the understanding of the observed excited-state lifetime in both naturally occurring and synthetic chromophores in solution and, tentatively, in the protein environment. In particular, we provide a rationalization of the excited-state lifetimes observed for a group of locked retinal chromophores which suggests that photoisomerization in bacteriorhodopsin is the result of simultaneous specific "catalysis" (all-trans --> 13-cis path) accompanied by specific "inhibition" (all-trans --> 11-cis path). The nature of the S(1) --> S(0) decay channel associated with the three paths has also been investigated at the CASSCF level of theory. It is shown that the energy surfaces in the vicinity of the conical intersection for the photoisomerization about the central double bond of retinal (position 11) and the two corresponding lateral double bonds (positions 9 and 13) are structurally different.     

Substituent-controlled photoisomerization in retinal chromophore models: Fluorinated and methoxy-substituted protonated Schiff bases

The effect of substitution on the intrinsic (i.e. in vacuo) photoisomerization ability of retinal chromophore models has been explored using CASPT2//CASSCF minimum energy path computations to map the S₁ photoisomerization paths of two substituted minimal models of the retinal chromophore: the 2-cis-penta-2,4-dieniminium and the all-trans-epta-2,4,6-trieniminium cations, which have been modified using fluorine or methoxyl substituents as representative examples of electron-withdrawing and electron-releasing groups, respectively. A systematic analysis has been performed involving substitutions in all the possible positions along the chain. It is shown that the photochemical reactivity and photoisomerization efficiency of these systems may be tuned or indeed changed, although this effect strongly depends on the position of the substituent. In particular, we have shown that (i) most of the systems preserves qualitatively the reactivity of the parent (i.e. unsubstituted) compound; (ii) substitution at positions C4 or C6 leads to a different relaxed excited state structure of the chromophore and in general to a very flat photoisomerization path (or to a tiny S₁ energy barrier in some cases); (iii) the nature of the TICT state (i.e. the S₁ → S₀ decay funnel) may be turned from a conical intersection into an excited state minimum; (iv) for the C4 methoxy-substituted system the isomerization path as well as the S₁/S₀ decay funnel involve an unusual torsional angle. Thus, substitution turns out to be a good tool not only to tune the optical properties (i.e. the absorption and emission features) of the chromophore (as we have already shown in a previous work: I. Conti, F. Bernardi, G. Orlandi, M. Garavelli, Mol. Phys. 104 (2006) 915–924), but it may also play a crucial role in tuning and controlling photoisomerization selectivity and efficiency, affecting excited state lifetime and reaction rate. A rationale for these effects is presented, which provides a basis for understanding reactivity properties and the intrinsic photochemical behavior of substituted retinal chromophores.     

The photoisomerization of retinal

Abstract— –Quantum efficiencies have been measured for the photoisomerization of four stereoisomers of retinal (all-trans, 13-cis, 11 cis, and 9-cis) in two solvents at different wavelengths of irradiation and at various temperatures. In heane at 25°C the quantum efficiencies for isomerization at 365 nm are: 9-cis to trans, 0.5; 13-cis to trans, 0.4; 11-cis to trans, 0.2; all-trans to monocis isomers, 0.2-0.06, depending upon assumptions made regarding the stereo-isomeric composition of the product. These values vary somewhat with the wavelength of the irradiating light. The quantum efficiency for the photoisomerization of all-trans retinal in hexane decreases by a factor of 30 when the temperature is lowered from 25° to – 65°C; the activation energy for this photoisomerization is about 5 kcal/mole. The quantum efficiencies for the isomerization of the monocis isomers to all-trans retinal in hexane are virtually independent of temperature. In ethanol the rates of photoisomerization from trans to cis or cis to trans depend only slightly on the temperature between 25° and – 65°C. The photosensitivities of the stereoisomers of retinal are of the same order of magnitude as those of the retinylidene chromophores of rhodopsin (11 -cis), metarhodopsin I (all-trans), and isorhodopsin (9-cis); but it is not yet possible to derive the photochemistry of rhodopsin uniquely and quantitatively from that of retinal.     

7,8-dihydro retinals outperform the native retinals in conferring photosensitivity to visual opsin

The visual pigment rhodopsin presents an astonishing photochemical performance. It exhibits an unprecedented quantum yield (0.67) in a highly defined and ultrafast photoisomerization process. This triggers the conformational changes leading to the active state Meta II of this G protein-coupled receptor. The responsible ligand, retinal, is covalently bound to Lys-296 of the protein in a protonated Schiff base. The resulting positive charge delocalization over the terminal part of the polyene chain of retinal creates a conjugation defect that upon photoexcitation moves to the opposite end of the polyene. Shortening the polyene as in 5,6-dihydro- or 7,8-dihydro analogues might facilitate photoisomerization of a 9-Z and an 11-Z bond. Here we describe pigment analogues generated with bovine opsin and 11-Z 7,8-dihydro retinal or 9-Z 7,8-dihydro retinal. Both isomers readily generate photosensitive pigments that differ remarkably in spectral properties from the native pigments. In addition, in spite of the more flexible 7,8 single bond, both analogue pigments exhibit strikingly efficient photoisomerization while largely maintaining the activity toward the G-protein. These results bear upon the activation of ligand-gated signal transducers such as G protein-coupled receptors.     

Picosecond time-resolved multiplex CARS spectroscopy using optical Kerr gating

We have developed a new spectroscopic system for picosecond time-resolved coherent anti-Stokes Raman scattering (CARS) measurements. Using the optical Kerr gating method in conjunction with a nanosecond laser-based CARS system, a time resolution of 1 ps has been achieved. All-trans retinal in 1-butanol has been measured. The observed time-resolved CARS spectra show changes in the 0–10 ps time range, which are ascribed to the photoisomerization dynamics of all-trans retinal in solution.     

The photoisomerization of 11‐cis‐retinal protonated schiff base in gas phase: Insight from spin‐flip density functional theory

This extensive theoretical study employed the spin‐flip density functional theory (SFDFT) method to investigate the photoisomerization of 11‐cis‐retinal protonated Schiff base (PSB11) and its minimal model tZt‐penta‐3,5‐dieniminium cation (PSB3). Our calculated results indicate that SFDFT can perform very well in describing the ground‐ and excited‐state geometries of PSB3 and PSB11. We located the conical intersection (CI) point and constructed the photoisomerization reaction path of PSB3 and PSB11 by using the SFDFT method. To further verify the SFDFT results, we computed the energy profiles along the constructed linearly interpolated internal coordinate (LIIC) pathways by using high‐level theoretical methods, such as the EOM‐CCSD, CR‐EOM‐CCSD(T), CASPT2, NEVPT2, and XMCQDPT2 methods. The SFDFT method predicts that the photoisomerization of PSB3 is barrierless, in accordance with previous complete‐active‐space self‐consistent‐field (CASSCF) results. However, an energy barrier is predicted along the LIIC pathways of PSB11. This finding is different from previous CASSCF results and may indicate that the photoisomerization of PSB11 in gas phase is similar to that in solution. However, the higher spin contamination of the SFDFT method in the vicinity of the CI point caused the located CI geometry to deviate from that of the real CI. In addition, the LIIC pathways are only approximations to the minimum energy path (MEP). Thus, further experimental and theoretical studies are needed to verify the existence of an energy barrier along the photoisomerization reaction path of PSB11 in gas phase. © 2013 Wiley Periodicals, Inc.     

Insights from the Adsorption of Halide Ions on Graphene Materials

Graphene has recently found applications in a wide range of fields. Density functional calculations show that halide ions can be adsorbed on pristine graphene, but only F^? has an appreciable binding energy (?97.0 kJ mol^?1). Graphene materials, which are mainly electron donors, can be made strong electron acceptors by edge functionalization with F atoms. The binding strengths of halide ions are greatly enhanced by edge functionalization and show direct proportionality with the degree of functionalization Θ and increased charge transfer. In contrast, the adsorption strengths of metal ions on pristine graphene are clearly superior to those of halide ions but decline substantially with increasing degree of edge functionalization, and for Θ=100 %, the binding energies of ?95.7, ?44.8, and ?25.9 kJ mol^?1 that are calculated for Li⁺, Na⁺, and K⁺, respectively, are obviously inferior to that of F^? (?186.3 kJ mol^?1). Thus, the electronic properties of graphene are fundamentally regulated by edge functionalization, and the preferential adsorption of certain metal ions or anions can be facilely realized by choice of an appropriate degree of functionalization. Adsorbed metal ions and anions behave differently on gradual addition of water molecules, and their binding strengths remain substantial when graphene materials are in the pristine and highly edge functionalized states, respectively.     

Counterion controlled photoisomerization of retinal chromophore models: a computational investigation

CASPT2//CASSCF photoisomerization path computations have been used to unveil the effects of an acetate counterion on the photochemistry of two retinal protonated Schiff base (PSB) models: the 2-cis-penta-2,4-dieniminium and the all-trans-epta-2,4,6-trieniminium cations. Different positions/orientations of the counterion have been investigated and related to (i) the spectral tuning and relative stability of the S0, S1, and S2 singlet states; (ii) the selection of the photochemically relevant excited state; (iii) the control of the radiationless decay and photoisomerization rates; and, finally, (iv) the control of the photoisomerization stereospecificity. A rationale for the results is given on the basis of a simple (electrostatic) qualitative model. We show that the model readily explains the computational results providing a qualitative explanation for different aspects of the experimentally observed "environment" dependent PSB photochemistry. Electrostatic effects likely involved in controlling retinal photoisomerization stereoselectivity in the protein are also discussed under the light of these results, and clues for a stereocontrolled electrostatically driven photochemical process are presented. These computations provide a rational basis for the formulation of a mechanistic model for photoisomerization electrostatic catalysis.     

IR125和HDITCP在不同烷基链长阳离子离子液体中的光异构化动力学

利用稳态吸收和荧光光谱以及时间相关单光子计数实验,分别测得近红外花菁分子IR125和HDITCP在不同烷基链长阳离子离子液体中的荧光量子产率和荧光寿命,并通过计算获得了它们各自在相应离子液体中的光异构化速率.发现IR125和HDITCP在不同离子液体中的光异构化速率没有随着离子液体粘度的增大而产生明显变化.与IR125和HDITCP在与离子液体具有相同粘度的甘油水溶液中的光异构化速率对比,发现IR125和HDITCP在离子液体中的光异构化能垒比它们在甘油水溶液中的光异构化能垒增大约2 kJ?mol-1,这表明在高粘度的离子液体中IR125或HDITCP与离子液体之间特殊的相互作用会阻碍它们各自的光异构化过程.     

Population branching in the conical intersection of the retinal chromophore revealed by multipulse ultrafast optical spectroscopy

The branching ratio of the excited-state population at the conical intersection between the S(1) and S(0) energy surfaces (Φ(CI)) of a protonated Schiff base of all-trans retinal in protic and aprotic solvents was studied by multipulse ultrafast transient absorption spectroscopy. In particular, pump-dump-probe experiments allowed to isolate the S(1) reactive state and to measure the photoisomerization time constant with unprecedented precision. Starting from these results, we demonstrate that the polarity of the solvent is the key factor influencing the Φ(CI) and the photoisomerization yield.     

Photoisomerization of PtII Complexes Containing Two Different Photochromic Chromophores: Boron Chromophore versus Dithienylethene Chromophore

In order to examine competitive photoisomerization, a series of novel photochromic Pt^II molecules that contain both dithienylethene (DTE) and B(ppy)Mes₂ units (ppy=2-phenylpyridine, Mes=mesityl) were successfully synthesized and fully structurally characterized. Their photochromic properties were examined by UV/Vis, emission and NMR spectroscopy. It was found that the DTE unit in all three compounds is the preferred photoisomerization site, exhibiting reversible photochromism with irradiation. The B(ppy)Mes₂ unit does not undergo photoisomerization in these molecules, but likely enhances the photoisomerization quantum efficiency of the DTE moiety through the antenna effect. Extended irradiation with UV light leads to the rearrangement of the ring-closed isomers of DTE. TD-DFT computational studies indicate that the DTE photocyclization proceeds via a triplet pathway through an efficient energy transfer process.     

Tuning of retinal twisting in bacteriorhodopsin controls the directionality of the early photocycle steps

Productive proton pumping by bacteriorhodopsin requires that, after the all-trans to 13-cis photoisomerization of the retinal chromophore, the photocycle proceeds with proton transfer and not with thermal back-isomerization. The question of how the protein controls these events in the active site is addressed here using quantum mechanical/molecular mechanical reaction-path calculations. The results indicate that, while retinal twisting significantly contributes to lowering the barrier for the thermal cis-trans back-isomerization, the rate-limiting barrier for this isomerization is still 5-6 kcal/mol larger than that for the first proton-transfer step. In this way, the retinal twisting is finely tuned so as to store energy to drive the subsequent photocycle while preventing wasteful back-isomerization.     

Tuning the Photoisomerization of a N^C‐Chelate Organoboron Compound with a Metal?Acetylide Unit

To examine the impact of metal moieties that have different triplet energies on the photoisomerization of B(ppy)Mes₂ compounds (ppy=2‐phenyl pyridine, Mes=mesityl), three metal‐functionalized B(ppy)Mes₂ compounds, Re‐B , Au‐B , and Pt‐B , have been synthesized and fully characterized. The metal moieties in these three compounds are Re(CO)₃(tert‐Bu₂bpy)(C?C), Au(PPh₃)(C?C), and trans‐Pt(PPh₃)₂(C?C)₂, respectively, which are connected to the ppy chelate through the alkyne linker. Our investigation has established that the Re^I unit completely quenches the photoisomerization of the boron unit because of a low‐lying intraligand charge transfer/MLCT triplet state. The Au^I unit, albeit with a triplet energy that is much higher than that of B(ppy)Mes₂, upon conjugation with the ppy chelate unit, substantially increases the contribution of the π→π* transition, localized on the conjugated chelate backbone in the lowest triplet state, thereby leading to a decrease in the photoisomerization quantum efficiency (QE) of the boron chromophore when excited at 365 nm. At higher excitation energies, the photoisomerization QE of Au‐B is comparable to that of the silyl–alkyne‐functionalized B(ppy)Mes₂ ( TIPS‐B ), which was attributable to a triplet‐state‐sensitization effect by the Au^I unit. The Pt^II unit links two B(ppy)Mes₂ together in Pt‐B , thereby extending the π‐conjugation through both chelate backbones and leading to a very low QE of the photoisomerization. In addition, only one boron unit in Pt‐B undergoes photoisomerization. The isomerization of the second boron unit is quenched by an intramolecular energy transfer of the excitation energy to the low‐energy absorption band of the isomerized boron unit. TD‐DFT computations and spectroscopic studies of the three metal‐containing boron compounds confirm that the photoisomerization of the B(ppy)Mes₂ chromophore proceeds through a triplet photoactive state and that metal units with suitable triplet energies can be used to tune this system.     

Cyclohexenylphenyldiazene: a simple surrogate of the azobenzene photochromic unit

We have carried out an experimental and computational study on the ground- and excited-state photochemical and photophysical properties of (1-cyclohexenyl)phenyldiazene (CPD), a species formally derived from azobenzene in which one of the phenyl rings is replaced by a 1-cyclohexene substituent. The results show that CPD does substantially behave like azobenzene, but with a higher (approximately 70%) Phi(Z-->E) (npi*) photoisomerization quantum yield, calling for CPD as an effective alternative of azobenzene itself with new functionalization possibilities. By use of state-of-the-art ab initio CASPT2//CASSCF minimum energy path computations, we have identified the most efficient decay and isomerization routes of the absorbing singlet (pipi*), S1 (npi*), T1, and S0 states of CPD. The resulting mechanistic scheme agrees with experimental findings and provides a rationale of the observed photoisomerization quantum yields. Furthermore, this study provides a deep insight on the photophysical and photochemical properties of compounds based on the -N=N- double bond which supplies a general model for the photoreactivity of azobenzene-type compounds in general. This is expected to be a useful guideline for the design of novel photoreactive azo compounds.     

Rhodium Bis(quinolinyl)benzene Complexes for Methane Activation and Functionalization

A series of rhodium(III) bis(quinolinyl)benzene (bisq^x) complexes was studied as candidates for the homogeneous partial oxidation of methane. Density functional theory (DFT) (M06 with Poisson continuum solvation) was used to investigate a variety of (bisq^x) ligand candidates involving different functional groups to determine the impact on Rh^III(bisq^x)‐catalyzed methane functionalization. The free energy activation barriers for methane C?H activation and Rh–methyl functionalization at 298 K and 498 K were determined. DFT studies predict that the best candidate for catalytic methane functionalization is Rh^III coordinated to unsubstituted bis(quinolinyl)benzene (bisq). Support is also found for the prediction that the η²‐benzene coordination mode of (bisq^x) ligands on Rh encourages methyl group functionalization by serving as an effective leaving group for S_N2 and S_R2 attack.     

菌紫质中视黄醛超快异构化反应的动态光谱分析

利用飞秒时间分辨吸收光谱方法研究了菌紫质(BR)光循环中视黄醛超快异构化反应过程. 发展了结合全局拟合的奇异值分解(SVD)分析方法, 建立了超快异构化反应动力学模型, 解析了几个重要的中间态I460, J625和K590的物种相关差异光谱(SADS)和布居动力学, 确定了光致异构化反应过程. 同时明确了700 nm附近存在的受激荧光来自于弗兰克-康登跃迁态(H中间态)的贡献, 其衰减寿命为0.04 ps. 这些结果对深入认识H态在超快异构化反应过程中的作用具有参考价值.     

Electrochemical Detection of Epinephrine Based on a Screen-printed Electrode Modified with NiO−ERGO Nanocomposite Film

This study presents a new electrochemical sensor (NiO−ERGO/SPE) for sensitive and selective detection of epinephrine (EPI) on the screen-printed electrode (SPE) which is modified with a nanocomposite film consisting of electrochemically reduced graphene oxide and NiO nanoparticles. After surface functionalization, structural and electrochemical characterization of NiO−ERGO film, DPV signals of NiO−ERGO/SPE towards the oxidation of EPI exhibited a linear correlation in the concentration range of 0.025 μM to 175 μM with a detection limit of 0.015 μM, which reveals NiO−ERGO film is manifested a good electrocatalytic activity for EPI detection compared with the previous reports. The selectivity of NiO−ERGO film was also tested on a very wide scale of possible interferents (ascorbic acid, uric acid, dopamine, lactic acid, phenylalanine, tyrosine, tryptophan, Li⁺, Na⁺, K⁺, Ca²⁺, and Zn²⁺). Moreover, to evaluate the applicability of the proposed sensor for real sample analysis, NiO−ERGO/SPE was successfully utilized for the determination of EPI in pharmaceutical samples.     

RPE65 and the Accumulation of Retinyl Esters in Mouse Retinal Pigment Epithelium

The RPE65 protein of the retinal pigment epithelium (RPE) enables the conversion of retinyl esters to the visual pigment chromophore 11‐cis retinal. Fresh 11‐cis retinal is generated from retinyl esters following photoisomerization of the visual pigment chromophore to all‐trans during light detection. Large amounts of esters accumulate in Rpe65^?/? mice, indicating their continuous formation when 11‐cis retinal generation is blocked. We hypothesized that absence of light, by limiting the conversion of esters to 11‐cis retinal, would also result in the build‐up of retinyl esters in the RPE of wild‐type mice. We used HPLC to quantify ester levels in organic extracts of the RPE from wild‐type and Rpe65^?/? mice. Retinyl ester levels in Sv/129 wild‐type mice that were dark adapted for various intervals over a 4‐week period were similar to those in mice raised in cyclic light. In C57BL/6 mice however, which contain less Rpe65 protein, dark adaptation was accompanied by an increase in ester levels compared to cyclic light controls. Retinyl ester levels were much higher in Rpe65^?/? mice compared to wild type and kept increasing with age. The results suggest that the RPE65 role in retinyl ester homeostasis extends beyond enabling the formation of 11‐cis retinal.