A 13C‐Labeled Triarylmethyl Radical as an EPR Spin Probe Highly Sensitive to Molecular Tumbling

A stable triarylmethyl spin probe whose electron paramagnetic resonance (EPR) spectrum is highly sensitive to molecular tumbling is reported. The strong anisotropy of the hyperfine coupling tensor with the central carbon of a ¹³C₁‐labeled triarylmethyl radical enables the measurement of the probe rotational correlation time with applications to measure microviscosity and molecular dynamics.     

Electron spin relaxation times and rapid scan EPR imaging of pH‐sensitive amino‐substituted trityl radicals

Carboxy‐substituted trityl (triarylmethyl) radicals are valuable in vivo probes because of their stability, narrow lines, and sensitivity of their spectroscopic properties to oxygen. Amino‐substituted trityl radicals have the potential to monitor pH in vivo, and the suitability for this application depends on spectral properties. Electron spin relaxation times T₁ and T₂ were measured at X‐band for the protonated and deprotonated forms of two amino‐substituted triarylmethyl radicals. Comparison with relaxation times for carboxy‐substituted triarylmethyl radicals shows that T₁ exhibits little dependence on protonation or the nature of the substituent, which makes it useful for measuring O₂ concentration, independent of pH. Insensitivity of T₁ to changes in substituents is consistent with the assignment of the dominant contribution to spin lattice relaxation as a local mode that involves primarily atoms in the carbon and sulfur core. Values of T₂ vary substantially with pH and the nature of the aryl group substituent, reflecting a range of dynamic processes. The narrow spectral widths for the amino‐substituted triarylmethyl radicals facilitate spectral‐spatial rapid scan electron paramagnetic resonance imaging, which was demonstrated with a phantom. The dependence of hyperfine splittings patterns on pH is revealed in spectral slices through the image. Copyright © 2014 John Wiley & Sons, Ltd.     

RGD-conjugated triarylmethyl radical as probe for electron paramagnetic imaging

A stable RGD-conjugated triarylmethyl (TAM) radical 3 has been synthesized in a straightforward three-step sequence. CT-03 ‘the Finland trityl’ which is a very popular contrast agent for electron paramagnetic resonance imaging has been covalently bound to the NH₂-ending of a pentapeptide commonly used to target integrins and confers tissue selectivity. Moreover, this new TAM radical is stable and sensitive to molecular oxygen.     

Structural and Magnetic Studies on Nickel(II) and Cobalt(II) Complexes with Polychlorinated Diphenyl(4-pyridyl)methyl Radical Ligands

New magnetic metal complexes with organic radical ligands, [M(hfac)₂(PyBTM)₂] (M = Ni^II, Co^II; hfac = hexafluoroacetylacetonato, PyBTM = (3,5-dichloro-4-pyridyl)bis(2,4,6-trichlorophenyl)methyl radical), were prepared and their crystal structures, magnetic properties, and electronic structures were investigated. Metal ions in [M(hfac)₂(PyBTM)₂] constructed distorted octahedral coordination geometry, where the two PyBTM molecules ligated in the trans configuration. Magnetic investigation using a SQUID magnetometer revealed that χT increased with decreasing temperature from 300 K in the two complexes, indicating an efficient intramolecular ferromagnetic exchange interaction taking place between the spins on PyBTM and M with J/k_B of 21.8 K and 11.8 K for [Ni^II(hfac)₂(PyBTM)₂] and [Co^II(hfac)₂(PyBTM)₂]. The intramolecular ferromagnetic couplings in the two complexes could be explained by density functional theory calculations, and would be attributed to a nearly orthogonal relationship between the spin orbitals on PyBTM and the metal ions. These results demonstrate that pyridyl-containing triarylmethyl radicals are key building blocks for magnetic molecular materials with controllable/predictable magnetic interactions.     

NanoSOSG: A Nanostructured Fluorescent Probe for the Detection of Intracellular Singlet Oxygen

A biocompatible fluorescent nanoprobe for singlet oxygen (¹O₂) detection in biological systems was designed, synthesized, and characterized, that circumvents many of the limitations of the molecular probe Singlet Oxygen Sensor Green^® (SOSG). This widely used commercial singlet oxygen probe was covalently linked to a polyacrylamide nanoparticle core using different architectures to optimize the response to ¹O₂. In contrast to its molecular counterpart, the optimum SOSG‐based nanoprobe, which we call NanoSOSG, is readily internalized by E. coli cells and does not interact with bovine serum albumin. Furthermore, the spectral characteristics do not change inside cells, and the probe responds to intracellularly generated ¹O₂ with an increase in fluorescence.     

Cyanine‐Like Dyes with Large Bond‐Length Alternation

Herein, the synthesis and properties of alkyne‐bridged carbocations, which are analogous in structure to cyanine dyes, are reported. An alkene‐bridged dye, linked at the third position of the indole, was also synthesized as a reference compound. These new carbocations are stable under ambient conditions, allowing characterization by UV/Vis and NMR (¹H and ¹³C) spectroscopies. These techniques revealed a large degree of delocalization of the positive charge, similar to a previously reported porphyrin carbocation. The linear and nonlinear optical properties are compared with cyanine dyes and triarylmethyl cations, to investigate the effects of the bond‐length alternation and the overall molecular geometry. The value of Re(γ), the real part of the third‐order microscopic polarizability, of ?1.3×10^?33 esu for the alkyne‐linked cation is comparable to that of a cyanine dye of similar length. Nondegenerate two‐photon absorption spectra showed that the alkene‐bridged dye exhibited characteristics of cyanines, whereas the alkyne‐bridged dye is reminiscent of octupolar chromophores, such as the triarylmethyl carbocation brilliant green. Such attributes were confirmed and rationalized by quantum chemical calculations.     

A Highly Efficient Chemiluminescence Probe for the Detection of Singlet Oxygen in Living Cells

Singlet oxygen is among the reactive oxygen species (ROS) with the shortest life‐times in aqueous media because of its extremely high reactivity. Therefore, designing sensors for detection of ¹O₂ is perhaps one of the most challenging tasks in the field of molecular probes. Herein, we report a highly selective and sensitive chemiluminescence probe ( SOCL‐CPP ) for the detection of ¹O₂ in living cells. The probe reacts with ¹O₂ to form a dioxetane that spontaneously decomposes under physiological conditions through a chemiexcitation pathway to emit green light with extraordinary intensity. SOCL‐CPP demonstrated promising ability to detect and image intracellular ¹O₂ produced by a photosensitizer in HeLa cells during photodynamic therapy (PDT) mode of action. Our findings make SOCL‐CPP the most effective known chemiluminescence probe for the detection of ¹O₂. We anticipate that our chemiluminescence probe for ¹O₂ imaging would be useful in PDT‐related applications and for monitoring ¹O₂ endogenously generated by cells in response to different stimuli.     

Carbenium ion pairs on silica: UV-spectroscopic and electrokinetic measurements of triarylmethylium/halide-aerosil in 1,2-dichloroethane

The interaction of carbenium ion pairs with silica is studied by means of UV-spectroscopy, electrokinetic and adsorption measurements using triphenylmethyl derivatives, (RC₆H₄)₃CX, (X=F, Cl, Br, SCN, OH; R=Cl, I, H, CH₃, C(CH₃)₃, OCH₃, N(CH₃)₂) in interaction with silica particles suspended in 1,2-dichloroethane. The adsorption of triarylmethyl-halides onto silica is accompanied by the heterolytic dissociation of the tertiary carbonhalogen bond. The degree of ionization depends on the basicity of the counter anion and acidity of the cation, respectively. The influences of both concentration and structure of triarylmethyl halides on the zeta-potential are discussed with regard to steric and electronic factor. The zeta-potential values of the adsorbates decrease significantly, as compared with the free silica surface, from a certain triarylmethyl halide concentration where ionization takes place, to a constant level which is characteristic of the carbenium ion pair. These constant zeta-potential values of the adsorbates depend on the basicity of the counter ion and the _p Hammett constants of the ring substitutents, with exclusion of sterically hindered substituents and salt derivatives, e.g., crystal violet and malachite green.     

A reversible fluorescence “ON–OFF–ON” sensor for sequential detection of F− and Cu2+ ions and its application as a molecular-scale logic device and security keypad lock

A new azoimine receptor, R₁, was synthesized by Schiff base condensation of 4-(4-butylphenyl) azophenol and 2,6-diaminopyridine and acts as a colorimetric and fluorometric chemosensor for F^? and also toward Cu²⁺ ions in aqueous environment. UV–Vis absorption and fluorescent emission spectra were employed to study the sensing process. Emission study was performed to examine the dual sensing ability of the obtained probe with sequential addition of F^? followed by Cu²⁺ and vice versa. The receptor is an efficient “ON–OFF” fluorescent probe for the fluoride ion. Also, R₁ + F^? operated as an “OFF–ON” fluorescent sensor for Cu²⁺ ions. Considering emission intensity and absorption wavelength for F^? and Cu²⁺ ions, a molecular system was developed with the ability to mimic the functions of XNOR logic gating on the molecular level. In addition, R₁ behaved as a molecular security keypad lock with F^? and Cu²⁺ inputs. The keypad lock operation is particularly important, as the output of the system depends not only on the proper combination but also on the order of input signals, creating the correct password that can be used to “open” this molecular keypad lock through strong fluorescence emission at 460?nm.     

Design of an electroactive peptide probe for sensing of a protein

We designed a new electroactive peptide probe that has a molecular recognition function for the sensing of a protein. Ovalbumin (OVA) was the model protein, and when RNRCKGTDVQAW interacted with OVA, it conjugated with a tyrosine-rich peptide (Y₄C). This peptide is electroactive, has a high degree of biocompatibility, and offers the possibility of gene expression. To measure the effect of a number of the tyrosine residues, voltammetric measurements were conducted using a series of tyrosine-rich peptides (Y_nC, n = 3–7) with sensitivities that ranged from 10⁻⁹ to 10⁻⁸ M. The electrode response of Y₅C was the maximum value in the series. However, the peak current did not increase when the number of tyrosine residues was increased in a linear fashion. This may have been due to the micelles that are formed by a tyrosine-rich surfactant peptide. Thus, Y₄C was suitable as an electroactive label for the construction of the peptide probe. The electrode response of Y₄CRNRCKGTDVQAW obtained by a glassy carbon electrode was 100-fold that of tyrosine alone. The measurement of OVA via the peptide probe resulted in a detection on the order of 10⁻¹² M. In contrast, the sensitivity of OVA using RCKGTDVQAWY₄C probe was at the 10⁻¹¹ M level, because the hydrophobic moiety gave it a molecular recognition function. The recoveries of the OVA using Y₄CRNRCKGTDVQAW in a solution containing fetal bovine serum ranged between 98 and 101%. Consequently, the combination of a specific peptide and an electroactive element could be a powerful probe for the sensing of proteins.     

Selective detection of mercury(II) and methylmercury(II) via coordination-induced emission of a small-molecule probe

Mercury is one of the major toxic pollutants and has many adverse effects on human health. The main mercury species in the environment or in living organisms are inorganic mercuric ion (Hg²⁺) and organic methylmercury (CH3Hg+). Detection of the two mercury ions is a particularly active topic in the molecular sensing field during the past decade. However, efficient sensors that can sensitively detect and discriminate the two species are rare. In this work, we adopt the concept of restriction of intramolecular rotations which is the basis of aggregation induced emission, and design a molecular probe with pyridyl group as the chelating unit and 1,8-naphthalimide as the fluorescent unit for the detection of both Hg²⁺ and CH₃Hg⁺. When the probe is free in solution, it exhibits weak fluorescence because free intramolecular rotations of the 1,8-naphthalimide moieties non-radiatively annihilate its excited state. However, upon coordination with Hg²⁺ or CH₃Hg⁺, the rotation of 1,8-naphthalimide moieties would be restricted due to the chelation between 1,8-naphthalimide and Hg²⁺ or CH₃Hg⁺, leading to significantly enhanced fluorescent emission. The response induced by Hg²⁺ is much stronger than CH₃Hg⁺; but for specific detection of CH₃Hg⁺, we introduced a T-rich DNA fragment which could completely mask Hg²⁺ in solution. Furthermore, we have employed the sensor for confocal imaging of Hg²⁺ and CH₃Hg⁺in immobilized cells. We expect the probe design tactics can be generally useful for sensing many other analytes.     

A novel sensitized chemiluminescence: Infrared emissions from thiazine dyes sensitized by singlet oxygen

An unusual infrared chemiluminescence emission (8130Å) of methylene blue, and other thiazine dyes, sensitized by singlet molecular oxygen is reported. This chemiluminescence does not correspond to the ordinary fluorescence of the dye and cannot be explained by previously proposed mechanisms for singlet oxygen sensitized emissions of dyes. From energetic considerations singlet molecular oxygen in its ¹Σ_g⁺ state is postulated as the sensitizing agent for the thiazine dye chemiluminescences. Schemes in which ¹Σ_g⁺ oxygen transfers electronic excitation energy (a) to the lowest triplet state of the dye, (b) to a combined multiplicity state of the lowest triplet state of the dye, and triplet molecular oxygen, or (c) to a charge-transfer state between the dye and oxygen, are compared. The chemiluminescence of methylene blue in aqueous solution may be used as a luminescent probe for ¹Σ_g⁺ oxygen.     

A Highly Selective Turn-On Fluorescent Probe for the Detection of Zinc

A novel turn-on fluorescence probe L has been designed that exhibits high selectivity and sensitivity with a detection limit of 9.53 × 10⁻⁸ mol/L for the quantification of Zn²⁺. ¹H-NMR spectroscopy and single crystal X-ray diffraction analysis revealed the unsymmetrical nature of the structure of the Schiff base probe L. An emission titration experiment in the presence of different molar fractions of Zn²⁺ was used to perform a Job’s plot analysis. The results showed that the stoichiometric ratio of the complex formed by L and Zn²⁺ was 1:1. Moreover, the molecular structure of the mononuclear Cu complex reveals one ligand L coordinates with one Cu atom in the asymmetric unit. On adding CuCl₂ to the ZnCl₂/L system, a Cu-Zn complex was formed and a strong quenching behavior was observed, which inferred that the Cu²⁺ displaced Zn²⁺ to coordinate with the imine nitrogen atoms and hydroxyl oxygen atoms of probe L.     

Design of a Hyperpolarized Molecular Probe for Detection of Aminopeptidase N Activity

Aminopeptidase N (APN) is an important enzyme that is involved in tumor angiogenesis. Detection of APN activity can thus lead to early diagnosis and elucidation of tumor development. Although some molecular probes for APN have been developed, the detection of APN activity in opaque biological samples remains a challenge. To this end, we designed a hyperpolarized NMR probe [1‐¹³C]Ala‐NH₂ which satisfies the prerequisites for APN detection, namely, sufficient retention of the hyperpolarized state, a high reactivity to APN, and an APN‐induced chemical shift change. The [1‐¹³C]Ala‐NH₂ probe allowed sensitive detection of APN activity using ¹³C NMR spectroscopy.     

In vivo monitoring an important plant immune signaling molecule salicylic acid by rhodamine-engineered probes and their density functional theory (DFT) calculations

Monitoring the dynamic fluctuations of plant immune signaling molecules is particularly meaningful and challenging in crop protection. Herein, four rhodamine-functionalized probes (F₁-F₄) were designed and synthesized to attempt to selectively detect a plant hormone salicylic acid (SA). Screening results revealed that probe F₁ bearing a 4,5-dimethoxy-2-nitrobenzyl carbamate moiety was extremely sensitive and selective towards SA along with a conspicuous fluorescence “turn-on” manner. The Job’s plot experiment disclosed a 1:1 binding mode together with a binding constant of 1.34 × 10⁴ M^?1, indicating that an appreciable hydrogen bonding interaction happened between probe F₁ and SA, thereby leading to the spirolactam ring breakage and the succeeding fluorescence generation. Concentration-dependent titration assays offered an available linear relationship for quantifying SA (15–70 μM) and the detection limit of probe F₁ to SA was 1 μM. Density functional theory (DFT) calculations displayed that a smaller energy gap (ΔE_F1-Ⅱ = 498.89 kJ/mol) was obtained between its lowest unoccupied molecular orbital (LUMO) and highest occupied molecular orbital (HOMO), manifesting that probe F₁ was more reactive and sensitive than those of probes F₂-F₄ (ΔE = 567.07 ～ 601.74 kJ/mol) after adsorption with salicylic acid. Meanwhile, the possible monitoring mechanism was elucidated by ¹H NMR titration experiments, probe-SA DFT calculations, and HRMS. Finally, in vivo confocal imaging results found that probe F₁ could delicately and selectively monitor SA on the roots of cucumber. This study can motivate the intensive exploration of multitudinous fluorescent probes for direct SA monitoring in vivo.     

Proton Transport in a Highly Conductive Porous Zirconium‐Based Metal–Organic Framework: Molecular Insight

The water stable UiO‐66(Zr)‐(CO₂H)₂ MOF exhibits a superprotonic conductivity of 2.3×10^?3 S cm^?1 at 90 °C and 95 % relative humidity. Quasi‐elastic neutron scattering measurements combined with aMS‐EVB3 molecular dynamics simulations were able to probe individually the dynamics of both confined protons and water molecules and to further reveal that the proton transport is assisted by the formation of a hydrogen‐bonded water network that spans from the tetrahedral to the octahedral cages of this MOF. This is the first joint experimental/modeling study that unambiguously elucidates the proton‐conduction mechanism at the molecular level in a highly conductive MOF.     

Solubility characteristics of poly(ethylene oxide): Effect of molecular weight,end groups and temperature

The general solvation equation $${\text{Log }}L = c + r \cdot R_2 + s \cdot \pi _2^{\text{H}} + a \cdot \alpha _2^{\text{H}} + b \cdot \beta _2^{\text{H}} + l \cdot \log {\text{ }}L^{16} $$ has been used to evaluate the effect of molecular weight, hydroxyl end groups and temperature on the solubility characteristics of poly(ethylene oxide), PEO. In this equationL is the gas-liquid partition coefficient of a series of probes on PEO, and the explanatory variables are solute properties describing the excess molar refraction,R ₂, the probe dipolarity-polarisability, π ₂ ^H , and the probe hydrogen-bond acidity and basicity, α ₂ ^H and β ₂ ^H .L ¹⁶ is the gas-liquid partition coefficient of the probe onn hexadecane at 298 K. Ther·R ₂ andl·logL ¹⁶ terms increased with increase in molecular weight whereas thes·π ₂ ^H and a α ₂ ^H terms decreased; in all cases theb·α ₂ ^H term was not significant. Since thes-constant is a measure of polymer polarity-polarisability, and thea-constant a measure of polymer basicity, we deduce that these polymer properties decrease with increasing molecular weight. Chains with molecular weight below 3000 showed a more rapid decrease in basicity compared to the higher molecular weight species. Thes·π ₂ ^H ,a·α ₂ ^H andl·logL ¹⁶ terms all decreased with increase in temperature. Finally, the contribution of the terminal hydroxyl groups to the total polymer basicity was evaluated and discussed.     

Engineering Crystals Using sp3-C Centred Tetrel Bonding Interactions

1,1,2,2-Tetracyanocyclopropane derivatives 1 and 2 were designed and synthesized to probe the utility of sp³-C centred tetrel bonding interactions in crystal engineering. The crystal packing of 1 and 2 and their 1,4-dioxane cocrystals is dominated by sp³-C(CN)₂⋅⋅⋅O interactions, has significant C⋅⋅⋅O van der Waals overlap (≤0.266 Å) and DFT calculations indicate interaction energies of up to −11.0 kcal mol⁻¹. A cocrystal of 2 with 1,4-thioxane reveals that the cyclopropane synthon prefers interacting with O over S. Computational analyses revealed that the electropositive C₂(CN)₄ pocket in 1 and 2 can be seen as a strongly directional ‘tetrel-bond donor’, similar to halogen bond or hydrogen bond donors. This disclosure is expected to have implications for the utility of such ‘tetrel bond donors’ in molecular disciplines such as crystal engineering, supramolecular chemistry, molecular recognition and medicinal chemistry.     

A Golgi Apparatus-Targetable Probe Based on Lanthanide Complexes for Ratiometric Time-Gated Luminescence Detection of Hydrogen Sulfide

Development of bioanalytical methods for selective and accurate detection of H₂S in living samples is essential for understanding the pathological and physiological functions of this gasotransmitter in biological systems. Here we report a Golgi apparatus-targetable lanthanide complex-based luminescent probe, Golgi-ABTTA-Eu³⁺/Tb³⁺, that can be used for accurately determining H₂S in aqueous solution and living cells via the ratiometric time-gated luminescence (RM-TGL) technique. This probe is composed of 2,2′:6′,2′′-terpyridine-Eu³⁺/Tb³⁺ mixed complexes as the luminophore, 4-azidobenzyl-ether as the responsive moiety, and sulfanilamide as the Golgi apparatus-targeting moiety. Upon reaction with H₂S, accompanied by the cleavage of 4-azidobenzyl group from the probe molecule, the long-lived emission of Tb³⁺ complex at 540 nm is significantly enhanced, while that of Eu³⁺ complex at 610 nm is obviously reduced. It was noted that the I₅₄₀/I₆₁₀ ratio increased by 8.8 times after the probe was exposed to H₂S, which enabled H₂S to be detected with RM-TGL method. After being incubated with living cells, the probe molecules were selectively accumulated in the Golgi apparatus, which allowed H₂S in the Golgi apparatus to be successfully imaged in RM-TGL mode.     

Highly selective probe of a copper(II) complex based on a coumarin derivative for hydrogen sulfide detection

Abstract

A fluorescent probe 1 containing copper(II) had been designed and synthesized based on a coumarin derivative. The molecular structure of probe 1 was characterized by ¹H NMR, HRMS, IR, and elemental analysis. The interactions of 1 with biologically important anions and amino acid were determined by UV–Vis, fluorescence, and HRMS titration experiments. Results indicated that probe 1 showed the highest binding ability for HS^? among studied anions (AcO^?, H₂PO₄^?, F^?, Cl^?, Br^?, and I^?) and cysteine in pure dimethyl sulfoxide (DMSO) and HEPES buffer solution. As we expected, the response of UV–Vis spectra in aqueous solution was stronger than that of pure DMSO solvent. In addition, the binding ability for HS^? was not hindered by the existence of other anions. HRMS titration experiment showed that the interacted mechanism was that the copper(II) ion in 1 was captured by HS^? and then free ligand released. Furthermore, the detection limit of probe 1 with HS^? was carried out through UV–Vis titration showing 1 to be highly sensitive for HS^?.