Modulated molecular recognition by a temperature‐sensitive molecularly‐imprinted polymer

Modulated molecular recognition was achieved in a temperature‐sensitive molecularly‐imprinted polymer. Using PNIPA as the temperature‐sensitive element, the adenine‐imprinted polymer (i.e., MIP‐S) was prepared and characterized. The MIP‐S exhibited a temperature‐responsive molecular recognition behavior because of the thermal phase‐transition within the MIP‐S network. Specifically, below the transition temperature (e.g., 20 °C), the MIP‐S showed a highly specific recognition for the imprint species (adenine). However, the MIP‐S did not show any significant resolution for the imprint species (adenine) and its analogue (1‐methyladenine) above the transition temperature (e.g., 40 °C). Such temperature‐regulated recognition is comparable to a switch‐on and switch‐off process, thereby making tunable molecular recognition feasible. © 2009 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 47: 2352–2360, 2009     

Cooperative Molecular Motion within a Self‐Assembled Liquid‐Crystalline Molecular Wire: The Case of a TEG‐Substituted Perylenediimide Disc

Always on the move : Molecular dynamics of perylene cores in columnar structures influences the processability and self‐healing of these materials. A combination of X‐ray scattering and advanced solid‐state NMR methods show that these systems have restricted angular mobility of the cores even in the frozen phase, and a cooperative spiral type of motion in the liquid crystalline phase (see picture).

     

4,4′‐Bipyridine as a Unidirectional Switching Unit for a Molecular Pushing Motor

A chirality switch in which the intrinsic chirality of a 4,4′‐bipyridine is combined with a metal‐ion‐induced switching principle is described. In the uncomplexed state the 4,4′‐bipyridine unit, which is linked to an S,S,S,S‐configured cyclic imidazole peptide, is P‐configured. The addition of zinc ions leads to a rotation around the C?C bond axis of the 4,4′‐bipyridine and the M isomer of the metal complex is formed. By addition of a stronger complexing agent the metal ions are removed and the switch returns to its initial position. The combination of the chirality switch with a second switching unit allows the construction of a molecular pushing motor, which is driven chemically and by light.     

Molecular Conductance through a Quadruple‐Hydrogen‐Bond‐Bridged Supramolecular Junction

A series of self‐complementary ureido pyrimidinedione (UPy) derivatives modified with different aurophilic anchoring groups were synthesized. Their electron transport properties through the quadruple hydrogen bonds in apolar solvent were probed employing the scanning tunneling microscopy break junction (STMBJ) technique. The molecule terminated with a thiol shows the optimal electron transport properties, with a statistical conductance value that approaches 10^?3 G₀. The ¹H NMR spectra and control experiments verify the formation of quadruple hydrogen bonds, which can be effectively modulated by the polarity of the solvent environment. These findings provide a new design strategy for supramolecular circuit elements in molecular electronics.     

Iodide‐Induced Shuttling of a Halogen‐ and Hydrogen‐Bonding Two‐Station Rotaxane

The first example of utilizing halogen‐bonding anion recognition to facilitate molecular motion in an interlocked structure is described. A halogen‐bonding and hydrogen‐bonding bistable rotaxane is prepared and demonstrated to undergo shuttling of the macrocycle component from the hydrogen‐bonding station to the halogen‐bonding station upon iodide recognition. In contrast, chloride‐anion binding reinforces the macrocycle to reside at the hydrogen‐bonding station.     

Solution‐Processed Bulk‐Heterojunction Photovoltaic Cells Based on Dendritic and Star‐Shaped D‐π‐A Organic Dyes

A series of D ‐π‐A organic dendritic and star‐shaped molecules based on three various chromophores (i.e., the truxene nodes, triphenylamine moieties as the donor, and benzothiadiazole chromophore as the acceptor) and their corresponding model compounds are facilely developed. Their photophysical and electrochemical properties are investigated in detail by UV/Vis absorption and photoluminescent spectroscopy, and cyclic voltammetry. By changing the various conjugated spacers (i.e., single bond, double bond, and triple bond) among the three chromophores of dendritic series, their photophysical properties (that is, the one‐photon absorption range and two‐photon absorption cross‐section values) are effectively modulated. All D ‐π‐A conjugated oligomers show a broad and strong absorption band from 250 to 700 nm in thin films. Solution‐processed bulk‐heterojunction photovoltaic devices using our oligomer as donor and PCBM as acceptor are fabricated and measured. The power conversion efficiency of the devices based on our oligomers continuously increases from DBTTr to TRTD2A as a result of an increasing relative absorption intensity in longer wavelength region by changing the donor‐acceptor ratio and conjugated spacers between the donor and acceptor. The power conversion efficiency of the devices based on TRTD2A was 0.54 % under the illumination of AM 1.5 and 100 mW cm^?2, which is the highest value recorded based on D ‐π‐A conjugated oligomers containing triphenylamine moieties and benzothiadiazole chromophores with truxene to date.     

Coordination‐Driven Folding and Assembly of a Short Peptide into a Protein‐like Two‐Nanometer‐Sized Channel

Short peptide helices have attracted attention as suitable building blocks for soft functional materials, but they are rarely seen in crystalline materials. A new artificial nanoassembly of short peptide helices in the crystalline state is presented in which peptide helices are arranged three‐dimensionally by metal coordination. The folding and assembly processes of a short peptide ligand containing the Gly‐Pro‐Pro sequence were induced by silver(I) coordination in aqueous alcohol, and gave rise to a single crystal composed of polyproline II helices. Crystallographic studies revealed that this material possesses two types of unique helical nanochannel; the larger channel measures more than 2 nm in diameter. Guest uptake properties were investigated by soaking the crystals in polar solutions of guest molecules; anions, organic chiral molecules, and bio‐oligomers are effectively encapsulated by this peptide‐folded porous crystal, with moderate to high chiral recognition for chiral molecules.     

Different molecular conformations co‐exist in each of three 2‐aryl‐N‐(1,5‐dimethyl‐3‐oxo‐2‐phenyl‐2,3‐dihydro‐1H‐pyrazol‐4‐yl)acetamides: hydrogen bonding in zero,one and two dimensions

4‐Antipyrine [4‐amino‐1,5‐dimethyl‐2‐phenyl‐1H‐pyrazol‐3(2H)‐one] and its derivatives exhibit a range of biological activities, including analgesic, antibacterial and anti‐inflammatory, and new examples are always of potential interest and value. 2‐(4‐Chlorophenyl)‐N‐(1,5‐dimethyl‐3‐oxo‐2‐phenyl‐2,3‐dihydro‐1H‐pyrazol‐4‐yl)acetamide, C₁₉H₁₈ClN₃O₂, (I), crystallizes with Z′ = 2 in the space group P, whereas its positional isomer 2‐(2‐chlorophenyl)‐N‐(1,5‐dimethyl‐3‐oxo‐2‐phenyl‐2,3‐dihydro‐1H‐pyrazol‐4‐yl)acetamide, (II), crystallizes with Z′ = 1 in the space group C2/c; the molecules of (II) are disordered over two sets of atomic sites having occupancies of 0.6020 (18) and 0.3980 (18). The two independent molecules of (I) adopt different molecular conformations, as do the two disorder components in (II), where the 2‐chlorophenyl substituents adopt different orientations. The molecules of (I) are linked by a combination of N—H…O and C—H…O hydrogen bonds to form centrosymmetric four‐molecule aggregates, while those of (II) are linked by the same types of hydrogen bonds forming sheets. The related compound N‐(1,5‐dimethyl‐3‐oxo‐2‐phenyl‐2,3‐dihydro‐1H‐pyrazol‐4‐yl)‐2‐(3‐methoxyphenyl)acetamide, C₂₀H₂₁N₃O₃, (III), is isomorphous with (I) but not strictly isostructural; again the two independent molecules adopt different molecular conformations, and the molecules are linked by N—H…O and C—H…O hydrogen bonds to form ribbons. Comparisons are made with some related structures, indicating that a hydrogen‐bonded R₂²(10) ring is the common structural motif.     

Water‐Mediated Recognition of Simple Alkyl Chains by Heart‐Type Fatty‐Acid‐Binding Protein

Long‐chain fatty acids (FAs) with low water solubility require fatty‐acid‐binding proteins (FABPs) to transport them from cytoplasm to the mitochondria for energy production. However, the precise mechanism by which these proteins recognize the various lengths of simple alkyl chains of FAs with similar high affinity remains unknown. To address this question, we employed a newly developed calorimetric method for comprehensively evaluating the affinity of FAs, sub‐Angstrom X‐ray crystallography to accurately determine their 3D structure, and energy calculations of the coexisting water molecules using the computer program WaterMap. Our results clearly showed that the heart‐type FABP (FABP3) preferentially incorporates a U‐shaped FA of C10–C18 using a lipid‐compatible water cluster, and excludes longer FAs using a chain‐length‐limiting water cluster. These mechanisms could help us gain a general understanding of how proteins recognize diverse lipids with different chain lengths.     

Host–Guest Chemistry of Aromatic‐Amide‐Linked Bis‐ and Tris‐Calix[4]pyrroles with Bis‐Carboxylates and Citrate Anion

A small library of polytopic receptors has been synthesized from meso‐p‐ and meso‐m‐aminophenylcalix[4]pyrroles and p‐ or m‐phthaloyl or trimesic chloride. Selected bis‐carboxylates and the citrate anion, which either exhibit altered distribution profiles in cancerous tissues in comparison with healthy tissues or are metabolites of carcinogenic substances (for example, trans,trans‐muconic acid from benzene exposure in humans) were tested as ligands. Varied affinities and binding modes were observed as a function of the number of calix[4]pyrroles and the topology of amide units present in each of the polytopic receptors. The structures of the 1:1 complexes derived by molecular modeling are in excellent agreement with the results of ¹H NMR complexation studies.     

NMR Structure of a Triangulenium‐Based Long‐Lived Fluorescence Probe Bound to a G‐Quadruplex

An NMR structural study of the interaction between a small‐molecule optical probe (DAOTA‐M2) and a G‐quadruplex from the promoter region of the c‐myc oncogene revealed that they interact at 1:2 binding stoichiometry. NMR‐restrained structural calculations show that binding of DAOTA‐M2 occurs mainly through π–π stacking between the polyaromatic core of the ligand and guanine residues of the outer G‐quartets. Interestingly, the binding affinities of DAOTA‐M2 differ by a factor of two for the outer G‐quartets of the unimolecular parallel G‐quadruplex under study. Unrestrained MD calculations indicate that DAOTA‐M2 displays significant dynamic behavior when stacked on a G‐quartet plane. These studies provide molecular guidelines for the design of triangulenium derivatives that can be used as optical probes for G‐quadruplexes.