Thermochemistry of 2- and 3-acetylthiophenes: calorimetric and computational study

The relative stabilities of 2- and 3-acetylthiophenes have been evaluated by experimental thermochemistry and the results compared to high-level ab initio calculations. The enthalpies of combustion, vaporization, and sublimation were measured by rotating-bomb combustion calorimetry, Calvet microcalorimetry, correlation gas chromatography, and Knudsen effusion techniques and the gas-phase enthalpies of formation, at T = 298.15 K, were determined. Standard ab initio molecular orbital calculations at the G2 and G3 levels were performed, and a theoretical study on the molecular and electronic structures of the compounds studied has been conducted. Calculated enthalpies of formation using atomization and isodesmic reactions are compared with the experimental data. Experimental and theoretical results show that 2-acetylthiophene is thermodynamically more stable than the 3-isomer. A comparison of the substituent effect of the acetyl group in benzene and thiophene rings has been carried out.     

Thermochemistry of 2- and 3-thiopheneacetic acids: calorimetric and computational study

The enthalpies of formation in the condensed and gas states, Delta f H m degrees (cd) and Delta f H m degrees (g), of 2- and 3-thiopheneacetic acids were derived from their respective enthalpies of combustion in oxygen, measured by a rotating bomb calorimeter, and the variation of vapor pressure with temperature determined by the Knudsen effusion technique. Theoretical calculations at the G3 level were performed, and a study on molecular and electronic structure of the compounds has been carried out. Calculated Delta f H m degrees (g) values using atomization and isodesmic reactions are compared with the experimental data. Experimental and theoretical results show that the 3-thiopheneacetic acid is thermodynamically more stable than the 2-isomer.     

Rearrangement pathways of 2-hydroxy-2-methylpropylidene: an experimental and computational study

Photolysis of exo-2-(1a,9b-dihydro-1H-cyclopropa[l]phenanthren-1-yl)propan-2-ol in benzene-d(6) afforded phenanthrene and the beta-hydroxycarbene intermediate 2-hydroxy-2-methylpropylidene. The carbene showed an overwhelming preference for 1,2-methyl migration as evident from the formation of 2-butanone as the major product via the enol 2-hydroxy-2-butene. Also produced, albeit in smaller amounts, were 1-methylcyclopropanol and 2,2-dimethyloxirane from intramolecular insertion into the C-H and O-H bonds, respectively. These results stand in sharp contrast to the intramolecular reactions of simple alkylcarbenes which usually prefer insertion into C-H bonds over 1,2-alkyl migrations. Calculations at the B3LYP/6-311+G//B3LYP/6-31G level of theory give a lower activation barrier for 1,2-methyl migration leading to the eventual formation of 2-butanone than for the other two pathways. The lower activation energy for methyl migration, relative to C-H and O-H insertions, strongly supports the observed experimental product distribution of the carbene. The parent carbene exists in three distinct conformations, each with stabilizing interactions between the adjacent bonds and the empty p orbital and the filled sp(2) orbital of the carbene center. The most stable conformer is perfectly poised for a 1,2-methyl migration as the C-CH(3) group is involved in a hyperconjugative interaction with the empty p orbital and the O-H bond is simultaneously interacting with the sp(2) lone pair of the carbene.     

Thermochemistry of 2,5-thiophenedicarboxylic acid

The enthalpies of combustion and sublimation of 2,5-thiophenedicarboxylic acid [CASRN 4282-31-9] were measured by rotary-bomb combustion calorimetry and the method of transference in a saturated stream of nitrogen, and the gas-phase enthalpy of formation was determined, Delta(f)H(o)(m)(g) = -(632.6 +/- 2.2) kJ x mol(-1). Standard ab initio molecular orbital calculations at the G2(MP2) and G3(MP2) levels were performed, and a theoretical study on the molecular and electronic structure of the compound has been carried out. The three most stable conformers have been explicitly taken into account. The calculated enthalpy of formation averaged using three different isodesmic reactions, -631.1 kJ x mol(-1), is in very good agreement with the experimental value. A comparison of the substituent effect of the carboxylic groups in benzene and thiophene ring has been made. The relative stability obtained for the substitution of two H atoms by COOH in position 2,5- for thiophene and 1,4- for benzene involve the same energetic effects, DeltaDelta(f)H(o)(m)= -747.6 +/- 2.4 and -748.2 +/- 2.7 kJ x mol(-1), respectively.     

Reactions of hydrazoic acid on TiO2 nanoparticles: an experimental and computational study

This article reports the results of a computational and experimental study on the reaction of hydrazoic acid, HN3, adsorbed on 15-20 nm TiO2 particle films. Experimentally, FTIR spectra of HN3(a) have been measured by varying HN3 dosage, UV irradiation time and surface annealing temperature. Three sharp peaks, related to v(a)(NNN) of HN3(a) and N3(a) with different configurations in the 2000-2200 cm(-1) region, and a broad band absorption, related to associated and isolated HN(a) and HO(a) adsorptions in the 3000-3800 cm(-1) region, have been detected. Computationally, molecular structures, vibrational frequencies and adsorption energies of possible adsorbates including HN3 and its derivatives, N3, N2, NH, and H, have been predicted by first-principles calculations based on the density functional theory (DFT) and the pseudopotential method. On the basis of the experimental and computational results, the peak appeared at 2075 cm(-1), which increases at a faster rate with HN3 exposure time, is attributed to a stable adsorbate, N3-Ti(a), with the predicted adsorption energy, E(ads) = 13 kcal/mol. The peak at 2118 cm(-1), which survives at the highest surface temperature in the heating experiment, is attributable to the most stable adsorbate, Ti-N2N(H)-O(a) with E(ads) = 36 kcal/mol. The peak at 2170 cm(-1), which vanishes most readily in all of the aforementioned experiments, is related to less stable molecular adsorbates, end-on HN3-Ti(a) with E(ads) = 5 kcal/mol and side-on HN(N2)-Ti(a) with E(ads) = 8 kcal/mol. A potential energy diagram for the formation of various absorbates with their transition states has been established for the HN3/TiO2 system. On the basis of the predicted desorption energies, the four most stable products of the HN3 reaction on TiO2 are H-O(a), 118 kcal/mol; HN-O(a), 85 kcal/mol; Ti-N2N(H)-O(a), 36 kcal/mol; and N3-O(a), 19 kcal/mol.     

Thermochemistry of drugs: experimental and theoretical study of analgesics

Structural Chemistry - Acetanilides are broadly used in the pharmaceutical industry. Thermochemical data on vapor pressures, solid-gas, liquid-gas, and solid-liquid phase transitions, as well as on...     

Selectivity in Garratt-Braverman cyclization: an experimental and computational study

Bispropargyl sulfones equipped with aromatic rings of dissimilar nature were synthesized. Under basic conditions, these sulfones isomerized to the bisallenic sulfones, creating a competitive scenario between two alternate Garratt-Braverman (GB) cyclization pathways. The observed product distribution ruled out the involvement of any ionic intermediate and supported the diradical mechanism with greater involvement of the electron-rich aromatic ring via the more nucleophilic radical. DFT-based calculations supported the diradical mechanism along with the observed selectivity.     

Palladium (II) and platinum (II) complexes with 2,5-dimethylbenzoxazole and 2,5-diphenyloxazole

Some 2,5-diphenyloxazole (PPO) and 2,5-dimethylbenzoxazole (Me₂BO) complexes of palladium (II) and platinum (II) have been prepared and their molar conductivities, i.r. and electronic spectra are reported and discussed. The PPO generally acts as monodentate N-bonded, while the Me₂BO behaves as monodentate O-bonded. The complexes are generally trans-square planar.     

Toward the computational design of diastereomeric resolving agents: an experimental and computational study of 1-phenylethylammonium-2-phenylacetate derivatives

The crystal structures, including two new polymorphs, of three diastereomerically related salt pairs formed by (R)-1-phenylethylammonium (1) with (S&R)-2-phenylpropanoate (2), (S&R)-2-phenylbutyrate (3), and (S&R)-mandelate (4) ions were characterized by low-temperature single crystal or powder X-ray diffraction. Thermal, solubility, and solution calorimetry measurements were used to determine the relative stabilities of the salt pairs and polymorphs. These were qualitatively predicted by lattice energy calculations combining realistic models for the dominant intermolecular electrostatic interactions and ab initio calculations for the ions' conformational energies due to the distortion of their geometries by the crystal packing forces. Crystal structure prediction studies were also performed for the highly polymorphic diastereomeric salt pair (R)-1-phenylethylammonium-(S&R)-2-phenylbutyrate (1-3) in an attempt to predict the separation efficiency without relying on experimental information. This joint experimental and computational investigation provides a stringent test for the reliability of lattice modeling approaches to explain the origins of chiral resolution via diastereomer formation (Pasteurian resolution). The further developments required for the computational screening of single-enantiomer resolving agents to achieve optimal chiral separation are discussed.     

Supercritical CO2-assisted atomization for deposition of cellulose nanocrystals: an experimental and computational study

Nanoparticle spray deposition finds numerous applications in pharmaceutical, electronics, manufacturing, and energy industries and has shown great promises in engineering the functional properties of the coated parts. However, current spray deposition systems either lack the required precision in controlling the morphology of the deposited nanostructures or do not have the capacity for large-scale deposition applications. In this study, we introduce a novel spray system that uses supercritical CO₂ to assist the atomization process and create uniform micron-size water droplets that are used as cellulose nanocrystal (CNC) carriers. CNCs are selected in this study as they are abundant, possess superior mechanical properties, and contain hydroxyl groups that facilitate interaction with neighboring materials. We fundamentally investigate the effect of different process parameters, such as injection pressure, gas-to-liquid ratio, the axial distance between the nozzle and substrate, and CNC concentration on the final patterns left on the substrate upon evaporation of water droplets. To this end, we show how tuning process parameters control the size of carrier droplets, dynamics of evaporation, and self-assembly of CNCs, which in turn dictate the final architecture of the deposited nanostructures. We will particularly investigate the morphology of the nanostructures deposited after evaporation of micron-size droplets that has not been fully disclosed to date. Different characterization techniques such as laser diffraction, polarized microscopy, and high-resolution profilometry are employed to visualize and quantify the effect of each process parameter. Numerical simulations are employed to inform the design of experiments. Finally, it is shown that the fabricated nanostructures can be engineered based on the size of the carrier droplets controlled by adjusting spray parameters and the concentration of nanoparticles in the injected mixture. Process parameters can be selected such that nanoparticles form a ring, disk, or dome-shaped structure. Moderate operational conditions, simplicity, and time efficiency of the process, and use of abundant and biodegradable materials, i.e., water, CNCs, and CO₂ promote the scalability and sustainability of this method.

     

Enantiodiscrimination of equol in β-cyclodextrin: an experimental and computational study

The interaction between the equol enantiomers and β -cyclodextrin is studied by molecular mechanics and molecular dynamics calculations. The chromatographic retention order is determined by these theoretical methods and compared with experimental findings. In the molecular mechanics calculations, the simultaneous relaxation of the host and the guest molecules is allowed, both in a vacuum and in aqueous solution. In the molecular dynamics calculations, the interaction energy between each enantiomer and the cavity is determined carrying out a simulation of 12 trajectories with different initial conditions at constant temperature (293 K), and minimising the energy of the structures extracted along the trajectories. To determine the preferential binding site and orientation of each guest molecule, the numerical density of presence in a volume element is calculated and compared with regions of maximum enantioselectivity. The more stable complex predicted in both cases is formed with R-equol, in agreement with experimental results.     

CS2O+ and CS2O in the gas phase: an experimental and computational study

The CS2O+ ion and CS2O molecule were prepared and structurally characterized by mass spectrometric techniques as isolated species in the gas phase. The theoretical analysis, performed by B3LYP and CCSD(T) computational methods, predicted different CS2O+ isomers, SSCO+, O(CS2)+, SCSO+, SCOS+ and S(COS)+, and structurally related singlet and triplet CS2O. Experiment and theory agree in identifying the obtained CS2O+ ions as a mixture of SCSO+ and SCOS+ isomers. CS2O neutral species, prepared by neutralization-reionization mass spectrometry, were directly characterized as intact, long-lived species with a lifetime tau > or =2 micros.     

Direct hydrogen-atom abstraction by activated bleomycin: an experimental and computational study

Bleomycin (BLM), a glycopeptide antibiotic chemotherapy agent, is capable of single- and double-strand DNA damage. Activated bleomycin (ABLM), a low-spin Fe(III)-OOH complex, is the last intermediate detected prior to DNA cleavage following hydrogen-atom abstraction from the C-4' of a deoxyribose sugar moiety. The mechanism of this C-H bond cleavage reaction and the nature of the active oxidizing species are still open issues. We have used kinetic measurements in combination with density functional calculations to study the reactivity of ABLM and the mechanism of the initial attack on DNA. Circular dichroism spectroscopy was used to directly monitor the kinetics of the ABLM reaction. These experiments yield a deuterium isotope effect, kH/kD approximately 3 for ABLM decay, indicating the involvement of a hydrogen atom in the rate-determining step. H-atom donors with relatively weak X-H bonds accelerate the reaction rate, establishing that ABLM is capable of hydrogen-atom abstraction. Density functional calculations were used to evaluate the two-dimensional potential energy surface for the direct hydrogen-atom abstraction reaction of the deoxyribose 4'-H by ABLM. The calculations confirm that ABLM is thermodynamically and kinetically competent for H-atom abstraction. The activation and reaction energies for this pathway are favored over both homolytic and heterolytic O-O bond cleavage. Direct H-atom abstraction by ABLM would generate a reactive Fe(IV)=O species, which would be capable of a second DNA strand cleavage, as observed in vivo. This study provides experimental and theoretical evidence for direct H-atom abstraction by ABLM and proposes an attractive mechanism for the role of ABLM in double-strand cleavage.     

Reactions of trimethylindium on TiO2 nanoparticles: experimental and computational study

This article reports the results of an experimental and computational study on the reaction of trimethylindium, In(CH3)(3), adsorbed on TiO2 nanoparticle films. Experimentally, Fourier transform infrared (FTIR) spectra have been measured by varying In(CH3)(3) dosing pressure, UV irradiation time in the absence and presence of oxygen, and surface annealing temperature on both "clean" and HO-covered TiO2 nanoparticle films. Computationally, adsorption energies, molecular structures, and vibrational frequencies of possible adsorbates have been predicted by first-principles calculations based on the density functional theory (DFT) and the pseudopotential method. Three important reactions involving CH3 elimination, CH4 elimination, and CH3 migration from the adsorbed trimethylindium have been elucidated in detail. CH(3 migration is the only exothermic process with the lowest reaction barrier. On the basis of experimental and computational results, the two sharpest peaks at 2979 and 2925 cm(-1), detected in the dosage and UV irradiation experiments in the absence of oxygen, are attributable to the asymmetric and symmetric C-H vibrations of methyl groups in In(CH3)3(a) and its derivatives, (H3C)2In(a), H3CIn(a), and H3CO(a). In the UV irradiation experiment in the presence of oxygen, the methyl groups attached to the In atom were quickly oxidized to the methoxy with the C-H vibrations at 2925 and 2822 cm(-1) and to the carboxyl group with vibrations at 2888 cm(-1) (vs(CH)), 1577 cm(-1) (va(OCO)), 1380 cm(-1) (delta(CH)), and 1355 cm(-1) (vs(OCO)). Finally, from the computed energies with vibrational analysis, the adsorbed structure of the carboxyl group was confirmed to involve two oxygen atoms doubly adsorbed on two surface Ti atoms.     

Metallacarbenes from diazoalkanes: an experimental and computational study of the reaction mechanism

PCP ligand (1,3-bis-[(diisopropyl-phosphanyl)-methyl]-benzene), and PCN ligand ([3-[(di-tert-butyl-phosphanyl)-methyl]-benzyl]-diethyl-amine) based rhodium dinitrogen complexes (1 and 2, respectively) react with phenyl diazomethane at room temperature to give PCP and PCN-Rh carbene complexes (3 and 5, respectively). At low temperature (-70 degrees C), PCP and PCN phenyl diazomethane complexes (4 and 6, respectively) are formed upon addition of phenyl diazomethane to 1 and 2. In these complexes, the diazo moiety is eta(1) coordinated through the terminal nitrogen atom. Decomposition of complexes 4 and 6 at low temperatures leads only to a relatively small amount of the corresponding carbene complexes, the major products of decomposition being the dinitrogen complexes 1 and 2 and stilbene. This and competition experiments (decomposition of 6 in the presence of 1) suggests that phenyl diazomethane can dissociate under the reaction conditions and attack the metal center through the diazo carbon producing a eta(1)-C bound diazo complex. Computational studies based on a two-layer ONIOM model, using the mPW1K exchange-correlation functional and a variety of basis sets for PCP based systems, provide mechanistic insight. In the case of less bulky PCP ligand bearing H-substituents on the phosphines, a variety of mechanisms are possible, including both dissociative and nondissociative pathways. On the other hand, in the case of i-Pr substituents, the eta(1)-C bound diazo complex appears to be a critical intermediate for carbene complex formation, in good agreement with the experimental results. Our results and the analysis of reported data suggest that the outcome of the reaction between a diazoalkane and a late transition metal complex can be anticipated considering steric requirements relevant to eta(1)-C diazo complex formation.     

Thermochemistry of the fluoroformyloxyl radical: a computational study based on coupled cluster theory

The standard enthalpy of formation of FCO(2) (X (2)B(2)) was determined by a computational approach based on coupled cluster theory [CCSD(T)] with energies extrapolated to the basis-set limit, with additional corrections accounting for core-valence correlation, scalar relativity, spin-orbit coupling, and zero-point vibrational motions. Utilizing a variety of independent reaction schemes, our best estimate is Delta(f)H(o)(0)(FCO(2)) = -86.0 +/- 0.6 kcal mol(-1) [Delta(f)H(o)(298) )(FCO(2)) = -86.7 +/- 0.6 kcal mol(-1)], which is shown to be more accurate than previous theoretical and experimental values. The chosen computational procedure was also applied to HCO (X (2)A'), where we find excellent agreement with experiment, and to FCO (X (2)A'), where we recommend an improved value of Delta(f)H(o)(0)(FCO) = -42.1 +/- 0.5 kcal mol(-1) [ Delta(f)H(o)(298)(FCO) = -42.0 +/- 0.5 kcal mol(-1)]. Further theoretical results concern the C-F bond dissociation energy, electron affinity, ionization energy, first and second excitation energies in FCO(2), fluoride ion affinity of CO(2), and equilibrium geometries of the molecules treated presently. For FCO (X (2)A') we propose an improved equilibrium structure: r(e)(CF) = 132.5(2) pm, r(e)(CO) = 116.7(2) pm, and theta(e)(FCO) = 127.8(2)(o).     

Singlet excited-state dynamics of 5-fluorocytosine and Cytosine: an experimental and computational study

The photophysics of singlet excited 5-fluorocytosine (5FC) was studied in steady-state and time-resolved experiments and theoretically by quantum chemical calculations. Femtosecond transient absorption measurements show that replacement of the C5 hydrogen of cytosine by fluorine increases the excited-state lifetime by 2 orders of magnitude from 720 fs to 73 +/- 4 ps. Experimental evidence indicates that emission in both compounds originates from a single tautomeric form. The lifetime of 5FC is the same within experimental uncertainty in the solvents ethanol and dimethyl sulfoxide. The insensitivity of the S(1) lifetime to the protic nature of the solvent suggests that proton transfer is not the principal quenching mechanism for the excited state. Excited-state calculations were carried out for the amino-keto tautomer of 5FC, the dominant species in polar environments, in order to understand its longer excited-state lifetime. CASSCF and CAS-PT2 calculations of the excited states show that the minimum energy path connecting the minimum of the (1)pi,pi state with the conical intersection responsible for internal conversion has essentially the same energetics for cytosine and 5FC, suggesting that both bases decay nonradiatively by the same mechanism. The dramatic difference in lifetimes may be due to subtle changes along the decay coordinate. A possible reason may be differences in the intramolecular vibrational redistribution rate from the Franck-Condon active, in-plane modes to the out-of-plane modes that must be activated to reach the conical intersection region.     

Enantioselective and diastereoselective Tsuji-Trost allylic alkylation of lactones: an experimental and computational study

The Tsuji-Trost protocol has been successfully employed for the allylic alkylation of preformed lactone enolates. It has been demonstrated that this Pd-catalyzed reaction can be carried out in an enantio- and diastereoselective manner. The use of additives, such as LiCl, was found to be crucial for reaching high levels of product selectivity. For one particular pair of reactants, density functional theory was used to investigate the mechanism of the nucleophilic addition. Among the five pathways considered, the reaction between an (allyl)Pd(BINAP) complex and a LiCl-lithium enolate adduct is predicted to be the most likely route for C-C bond formation. LiCl plays a key role as the connecting link between the noble metal and the enolate in the kinetically favored transition state. The computed diastereoselectivity ratio is in good agreement with the experimentally observed value.     

Thermochemistry of 1,3-dithiacyclohexane 1-oxide (1,3-dithiane sulfoxide): calorimetric and computational study

The enthalpies of combustion and sublimation of 1,3-dithiacyclohexane 1-oxide (1,3-dithiane sulfoxide, 2) were measured by a rotating-bomb combustion calorimeter and the Knudsen effusion technique, and the gas-phase enthalpy of formation was determined, DeltafH degrees m(g) = -98.0 +/- 1.9 kJ mol(-1). This value is not as large (negative) as could have been expected from comparison with thermochemical data available for the thiane/thiane oxide reference system. High-level ab initio molecular orbital calculations at the MP2(FULL)/6-31G(3df,2p) level were performed, and the optimized molecular and electronic structures of 2 afforded valuable information on (1) the relative conformational energies of 2-axial and 2-equatorial--the latter being 7.1 kJ mol(-1) more stable than 2-axial, (2) the possible involvement of nS --> sigma*(C-S(O)) hyperconjugation in 2-equatorial, (3) the lack of computational evidence for sigma(S-C) --> sigma*(S-O) stereoelectronic interaction in 2-equatorial, and (4) the relevance of a repulsive electrostatic interaction between sulfur atoms in 1,3-dithiane sulfoxide, which apparently counterbalances any nS --> sigma*(C-S(O)) stabilizing hyperconjugative interaction and accounts for the lower than expected enthalpy of formation for sulfoxide 2.     

Ion-pairing of octyl viologen diiodide in low-polar solvents: an experimental and computational study

We have investigated the ion-pairing and solvent effect on the NMR and UV/vis spectra of 1,1'-di- n-octyl-4,4'-bipyridinium diiodide in various solvents. A strikingly different behavior is observed in the low polar solvent dichloromethane. A large deshielding of the meta bipyridinium core resonance occurs and charge transfer (CT) transitions are observed in the visible region due to the formation of ion-pairs. The CT bands show a marked blue-shift as the polarity of the solvent is increased. Experimental data have been compared with the results of DFT calculations of proton's chemical shifts and TD-DFT calculations of the vertical electronic transitions of model ion-pairs (using the smaller methyl viologen dication) in the gas phase and after the inclusion of the solvent reaction field by means of the PCM scheme. Different geometrical arrangements of the ion-pairs have been investigated, and the direct and indirect solvent effect has been elucidated. A good agreement is obtained which allows one to get insights concerning the CT transitions of this system and the geometry of the ion-pairs in solution of low-polar solvents.