Structure determination of small vanadium clusters by density-functional theory in comparison with experimental far-infrared spectra

The far-infrared vibrational spectra for charged vanadium clusters with sizes of 3-15 atoms have been measured using infrared multiple photon dissociation of Vn+Ar-->Vn(+)+Ar. Using density-functional theory calculations, we calculated the ground state energy and vibrational spectra for a large number of stable and metastable geometries of such clusters. Comparison of the calculated vibrational spectra with those obtained in the experiment allows us to deduce the cluster size specific atomic structures. In several cases, a unique atomic structure can be identified, while in other cases our calculations suggest the presence of multiple isomers.     

Ab initio calculation of vibrational frequencies and Raman spectra of barium peroxide glass including comparison of tetrahedral BaO4 with GeO4 and SiO4

We have calculated the vibrational frequencies of clusters of atoms from the first principles by using the density-functional theory in the local density approximation (LDA). We are also able to calculate the electronic binding energy for all of the clusters of atoms from the optimized structure. We have made clusters of BanOm (n, m=1-6) and have determined the bond lengths, vibrational frequencies as well as intensities in each case. We find that the peroxide cluster BaO2 occurs with the O-O vibrational frequency of 836.3 cm(-1). We also find that a glass network occurs in the material which explains the vibrational frequency of 67 cm(-1). The calculated values agree with those measured from the Raman spectra of barium peroxide and Ba-B-oxide glass. We have calculated the vibrational frequencies of BaO4, GeO4 and SiO4 each in tetrahedral configuration and find that the vibrational frequencies in these systems depend on the inverse square root of the atomic mass.     

The far-infrared spectra of neutral and cationic niobium clusters: Nb5 0/+ to Nb9 0+

Far-infrared absorption spectra of small neutral and cationic niobium clusters containing five to nine Nb atoms have been obtained by multiple photon dissociation spectroscopy of their argon complexes. The experimental far-IR spectra are recorded in the 85-600 cm(-1) region and cover the range of the structure-specific vibrational fundamentals, i.e., the finger-print range, for these metal clusters. The experiments are accompanied by quantum chemical calculations employing the density-functional theory. A comparison of the experimental and calculated far-IR spectra allows to identify the cluster structures. Although the experimental spectra for clusters containing five, six, eight, and nine Nb atoms are very different for cationic and neutral clusters, the comparison with theory reveals that, nevertheless, the overall geometries for cations and neutrals are very similar, except for Nb(6) (0+).     

Gas phase infrared spectroscopy of mono- and divanadium oxide cluster cations

The vibrational spectroscopy of the mono- and divanadium oxide cluster cations VO(1-3)+ and V2O(2-6)+ is studied in the region from 600 to 1600 wave numbers by infrared photodissociation of the corresponding cluster cation-helium atom complexes. The comparison of the experimental depletion spectra with the results of density functional calculations on bare vanadium oxide cluster cations allows for an unambiguous identification of the cluster geometry in most cases and, for VO(1-3)+ and V2O(5,6)+, also of the electronic ground state. A common structural motif of all the studied divanadium cluster cations is a four-membered V-O-V-O ring, with three characteristic absorption bands in the 550-900 wave number region. For the V-O-V and V=O stretch modes the relationship between vibrational frequencies and V-O bond distances follows the Badger rule.     

链状三核异金属簇阴离子［Cl_2FeS_2M＇（PPh_3）_2］~－（M＝Mo

在５５０～９０ｃｍ~（－１）波数范围内，测量簇阴离子［Ｃｌ_２ＦｅＳ_２ＭＳ_２Ｍ′（ＰＰｈ_３）_２］~－（Ｍ＝Ｍｏ，Ｍ′＝Ａｇ；Ｍ＝Ｗ，Ｍ′＝Ｃｕ，Ａｇ）的付里叶变换红外光谱，并对标题簇阴离子［Ｃｌ_２ＦｅＳ_２ＷＳ_２Ｃｕ（ＰＰｈ_３）_２］~－，［Ｃｌ_２ＦｅＳ_２ＭｏＳ_２Ａｇ（ＰＰｈ_３）_２］~－和［Ｃｌ_２ＦｅＳ_２ＷＳ_２Ａｇ（ＰＰｈ_３）_２］~－骨架的振动光谱给予经验指认。同时采用＂诱导自洽方法计算振动力常数＂程序，对簇骨架［Ｃｌ_２ＦｅＳ_２ＭＳ_２Ｍ~′Ｐ_２］进行简正坐标分析。振动频率的计算值与观测值符合良好，两者平均偏差小于１．０％，计算结果支持了振动谱带的归属并表明计算力常数的合理性。文中还讨论了主要价键振动频率的变化规律。     

DFT study of Raman scattering spectra of complexes of spiropyrans with the silver cluster

The computational simulation of structure, energy and spectral characteristics of spiropyrans and their complexes with the cluster containing ten silver atoms was carried out using the density functional theory method (B3LYP/6-31G(d,p)/SDD). A competitive coordination of oxygen-containing substituents in the indoline and benzopyran moieties in spirocyclic molecules to the metal atoms was studied and an effect of position of donor groups on the activity of CO vibrational bands was established in the calculated Raman spectra. We revealed compounds, whose trans-trans-trans isomers upon a complexation with the silver cluster are characterized by the more than 100 times enhanced activity of band associated with the valence vibrations of CO bond in the Raman spectrum.     

Identification of defect sites on MgO(100) thin films by decoration with Pd atoms and studying CO adsorption properties.

CO adsorption on Pd atoms deposited on MgO(100) thin films has been studied by means of thermal desorption (TDS) and Fourier transform infrared (FTIR) spectroscopies. CO desorbs from the adsorbed Pd atoms at a temperature of about 250 K, which corresponds to a binding energy, E(b), of about 0.7 +/- 0.1 eV. FTIR spectra suggest that at saturation two different sites for CO adsorption exist on a single Pd atom. The vibrational frequency of the most stable, singly adsorbed CO molecule is 2055 cm(-)(1). Density functional cluster model calculations have been used to model possible defect sites at the MgO surface where the Pd atoms are likely to be adsorbed. CO/Pd complexes located at regular or low-coordinated O anions of the surface exhibit considerably stronger binding energies, E(b) = 2-2.5 eV, and larger vibrational shifts than were observed in the experiment. CO/Pd complexes located at oxygen vacancies (F or F(+) centers) are characterized by much smaller binding energies, E(b) = 0.5 +/- 0.2 or 0.7 +/- 0.2 eV, which are in agreement with the experimental value. CO/Pd complexes located at the paramagnetic F(+) centers show vibrational frequencies in closest agreement with the experimental data. These comparisons therefore suggest that the Pd atoms are mainly adsorbed at oxygen vacancies.     

Identification of two distinct electron binding motifs in the anionic water clusters: a vibrational spectroscopic study of the (H2O)6- isomers

Photoelectron spectroscopy of the water cluster anions, (H2O)n-, has revealed that several isomeric forms are present for most sizes, and here, we use vibrational spectroscopy to address the structure of the (H2O)6- isomer that more weakly binds the extra electron. To overcome the severe line broadening that occurs in the OH stretching region of this isomer caused by fast electron autodetachment, we concentrate on the low-energy bending modes of the perdeutero isotopomer. Sharp spectroscopic signatures are recovered for two isomers using argon predissociation spectroscopy, and the resulting bands are heavily overlapped. To extract their independent contributions to the observed spectra, we exploit the substantial dependence of their relative populations on the number of attached argon atoms in the (D2O)6-.Ar(m) clusters, determined by photoelectron spectroscopy. The vibrational spectra of each isomer can then be isolated by spectral subtraction, which is implemented with a covariance mapping approach. The resulting band patterns establish that the more weakly binding isomer does not display the characteristic electron-binding motif common to the more strongly bound isomer class. Whereas the strongly binding isomer features a single water molecule pointing toward the excess electron cloud with both of its hydrogen atoms, the spectrum of the more weakly binding isomer suggests a structure where the electron is bound by a number of dangling OH groups corresponding to water molecules in acceptor-donor binding sites.     

Far-infrared spectroscopy of small neutral silver clusters

The vibrational spectra of Ag(3) and Ag(4) are recorded in the far-infrared between 100 and 220 cm(-1) using multiple photon dissociation spectroscopy of their complexes with Ar atoms. For Ag(3)-Ar two IR active bands are found at 113 and 183 cm(-1), for Ag(4)-Ar one band at 163 cm(-1) and very weak IR activity at 193 cm(-1) are observed. This, together with recent theoretical studies, allows for a reassignment of the controversial vibrational data reported earlier for the bare Ag(3) cluster. The influence of the number of Ar atoms in the complexes on the frequency of the IR active modes is found to be minor. However, the low-frequency IR-active band of Ag(3) shifts with increasing Ar coverage from 113 cm(-1) for Ag(3)-Ar to about 120 cm(-1) for Ag(3)-Ar(4), the value known for Ag(3) embedded in rare gas matrices.     

Spectroscopy of size-selected neutral silicon clusters: Remarkably similar spectra for clusters containing between ∼15 and 70 atoms

Absorption spectra have been recorded for gas phase, size-selected neutral silicon clusters using resonant one- and two-color photodissociation spectroscopy. We now have spectra between 0.94 – 5.58 eV for clusters containing up to 70 atoms. Starting at ～15 atoms, the spectra are all amazingly identical. Comparisons of the silicon cluster spectra to those of various forms of bulk silicon show that the cluster spectra have much in common with the spectrum of the most stable diamond structure of bulk crystalline silicon.     

Transition state spectroscopy of the I + HI reaction in clusters: photoelectron spectroscopy of IHI-.Arn (n = 1-15)

We have investigated effects of solvation on the transition state spectroscopy and dynamics of the I + HI reaction by measuring the anion photoelectron (PE) spectra of the clusters IHI-.Arn (n = 1-5). Argon clustering results in a successive shift of the PE spectra to lower electron kinetic energies with increasing cluster size. It also leads to significant vibrational cooling in the PE spectra and facilitates the observation of features associated with symmetric stretch vibrations and hindered rotational motions of the transition state complex IHI. The shifts in electron binding energy suggest that the first six argon atoms form a ring around the waist of the IHI- anion, just as in I2-.Arn. The spacing of the antisymmetric stretch features evolves with cluster size and is attributed at least in part to perturbation of the IHI- geometry in larger argon clusters. Intensities of features due to hindered rotation are enhanced for larger clusters, possibly due to solvent perturbation of the neutral transition state region.     

Vibrational dynamics of DNA. II. Deuterium exchange effects and simulated IR absorption spectra

In Paper I, we studied vibrational properties of normal bases, base derivatives, Watson-Crick base pairs, and multiple layer base pair stacks in the frequency range of 1400-1800 cm(-1). However, typical IR absorption spectra of single- and double-stranded DNA have been measured in D(2)O solution. Consequently, the more relevant bases and base pairs are those with deuterium atoms in replacement with labile amino hydrogen atoms. Thus, we have carried out density functional theory vibrational analyses of properly deuterated bases, base pairs, and stacked base pair systems. In the frequency range of interest, both aromatic ring deformation modes and carbonyl stretching modes appear to be strongly IR active. Basis mode frequencies and vibrational coupling constants are newly determined and used to numerically simulate IR absorption spectra. It turns out that the hydration effects on vibrational spectra are important. The numerically simulated vibrational spectra are directly compared with experiments. Also, the (18)O-isotope exchange effect on the poly(dG):poly(dC) spectrum is quantitatively described. The present calculation results will be used to further simulate two-dimensional IR photon echo spectra of DNA oligomers in the companion Paper III.     

质子化丙酮分子团簇的结构和振动光谱

The stable structures and vibrational spectra of protonated acetone molecule clusters with different sizes （CH3COCH3）nH +（n=1-7）are calculated at the 6-31G（d）level by means of density functional theory （B3LYP）quantum chemical calculations. The corresponding energies are analyzed at the level B3LYP/6-311+G（3df,2p）in order to obtain more accurate results. The proton affinity of neutral cyclic acetone molecule clusters increases with the increasing of cluster size. The calculated results show that the protonated acetone clusters have certain growth regularity with forming a solvation shell at the beginning and then new added acetone molecule attacking different active sites including the middle carbon atoms and the different methyl in solvation shell. The IR spectra of the protonated clusters are more complicate than that of neutral ones. The strongest peaks result from the movement of the proton between the two oxygen atoms in solvant shell apart from the case of n=1. Carbonyl stretching vibraional peaks split into the more and more and in general the corresponding intensities are weakened due to the protonation with the increasing of cluster size.     

Computational spectroscopy of carbon monoxide isotopomers in helium clusters

The rotational excitation spectrum, including the vibrational shift of the rotational band, of several CO isotopomers solvated in He clusters has been calculated. Reptation quantum Monte Carlo simulations are used in conjunction with an accurate He-CO potential energy surface, which quantitatively describes the rovibrational spectrum of the binary complex. Our simulations, when compared with number-selective infrared spectra taken for different isotopomers, help discriminate among the alternative assignments proposed for cluster sizes around 15 He atoms. The origin of the vibrational band has a red shift that is nearly linear with the cluster size within the first solvation shell and is almost constant up to the largest cluster studied, well beyond completion of the second solvation shell. A blue upturn at even larger sizes would be needed to attain the nanodroplet limit, as recently estimated from the isotopic dependence of the measured R(0) transitions.     

Gold apes hydrogen. The structure and bonding in the planar B7Au2- and B7Au2 clusters

We produced the B7Au2- mixed cluster and studied its electronic structure and chemical bonding using photoelectron spectroscopy and ab initio calculations. The photoelectron spectra of B7Au2- were observed to be relatively simple with vibrational resolution, in contrast to the complicated spectra observed for pure B7-, which had contributions from three isomers (Alexandrova et al. J. Phys. Chem. A 2004, 108, 3509). Theoretical calculations show that B7Au2- possesses an extremely stable planar structure, identical to that of B7H2-, demonstrating that Au mimics H in its bonding to boron, analogous to the Au-Si bonding. The ground-state structure of B7Au2- (B7H2-) can be viewed as adding two Au (H) atoms to the terminal B atoms of a higher-lying planar isomer of B7-. The bonding and stability in the planar B7Au2- (B7H2-) clusters are elucidated on the basis of the strong covalent B-Au (H) bonding and the concepts of aromaticity/antiaromaticity in these systems.     

Diffraction and vibrational dynamics of large clusters from He atom scattering

The vibrational dynamics of large Ar _n clusters from n=30 to n=4500 is investigated by measuring the energy loss of He atoms in a high resolution scattering experiment. The clusters are generated by adiabatic expansion through conical nozzles and contain a distribution of cluster sizes. The He supersonic nozzle beam provides a resolution of better than 1 meV. The results are compared with calculated spectral density functions for single cluster sizes and bulk phonon spectra.     

High-resolution infrared spectroscopy of HCN-Agn (n = 1-4) complexes solvated in superfluid helium droplets

High-resolution infrared spectroscopy has been used to determine the structures, C-H stretching frequencies, and dipole moments of the HCN-Agn (n = 1-3) complexes formed in superfluid helium droplets. The HCN-Ag4 cluster was tentatively assigned based upon pick-up cell pressure dependencies and harmonic vibrational shift calculations. Ab initio and density functional theory calculations were used in conjunction with the high-resolution spectra to analyze the bonding nature of each cluster. All monoligated species reported here are bound through the nitrogen end of the HCN molecule. The HCN-Agn complexes are structurally similar to the previously reported HCN-Cun clusters, with the exception of the HCN-Ag binary complex. Although the interaction between the HCN and the Agn clusters follows the same trends as the HCN-Cun clusters, the more diffuse nature of the electrons surrounding the silver atoms results in a much weaker interaction.     

Molecular structure of 2-(hydroxyimino)propanohydroxamic acid in solid state and DMSO solution

The 1H and 13C NMR spectra of 2-(hydroxyimino)propanohydroxamic acid (hpha) were measured in DMSO-d6 solution. The set of several monomeric structures along with the cluster of H-bonded hpha with three DMSO molecules were proposed to fit the experimental data. The calculated chemical shifts [B3LYP/6-311++G(d,p)] strongly suggested the formation of the cluster in which all the labile protons were H-bonded to the solvent molecules. The comparison between experimental and calculated Raman spectra of hpha in DMSO also suggested that in these conditions the investigated compound forms the proposed cluster rather than dimers. According to our calculations [B3LYP/6-31+G(d)] this cluster was energetically stabilized (84-106 kJ mol-1) compared to postulated dimeric structures. On the other hand, formation of dimers was proposed to be present for hpha in solid state. The comparison of the vibrational data (IR, RS) with the computed harmonic frequencies of three most probable dimers [B3LYP/6-31+G(d)] suggested that the dimer in which molecules adopted the zEe-keto form and were linked by two symmetric, almost linear H-bonds between the carbonyl oxygen atoms and the hydroxamic O-H protons was the predominant species of hpha in the solid state. Thus, the structures of hpha in solid state and DMSO solution appeared to be different.     

Infrared spectroscopy of copper-resveratrol complexes: a joint experimental and theoretical study

Infrared multiple-photon dissociation spectroscopy has been used to record vibrational spectra of charged copper-resveratrol complexes in the 3500-3700 cm(-1) and 1100-1900 cm(-1) regions. Minimum energy structures have been determined by density functional theory calculations using plane waves and pseudopotentials. In particular, the copper(I)-resveratrol complex presents a tetra-coordinated metal bound with two carbon atoms of the alkenyl moiety and two closest carbons of the adjoining resorcinol ring. For these geometries vibrational spectra have been calculated by using linear response theory. The good agreement between experimental and calculated IR spectra for the selected species confirms the overall reliability of the proposed geometries.     

Photoelectron spectroscopy of S1 toluene: I. Photoionization propensities of selected vibrational levels in S1 toluene

Laser photoelectron spectra have been obtained following the preparation of eight vibrational states in S(1) toluene. For four of the vibrational states (up to approximately 550 cm(-1) excess energy) excitation and ionization with nanosecond laser pulses give rise to photoelectron spectra with well-resolved vibrational peaks. For the other states (>750 cm(-1) excess energy) the photoelectron spectra show a loss of structure when nanosecond pulses are used, as a result of intramolecular dynamics [see Whiteside et al., J. Chem. Phys. 123, 204317 (2005), following paper]. A number of vibrational peaks in the photoelectron spectra are assigned, and we find that the common series of ion vibrational peaks observed following the ionization of p-fluorotoluene in various S(1) vibrational states is not reproduced in toluene.