Importance of the C-H...N weak hydrogen bonding on the coordination structures of manganese(III) porphyrin complexes

The reactions between Mn(Por)Cl and Bu(4)N(+)CN(-) have been examined in various solvents by UV-vis and (1)H NMR spectroscopy, where Por's are dianions of meso-tetraisopropylporphyrin (T(i)PrP), meso-tetraphenylporphyrin (TPP), meso-tetrakis(p-(trifluoromethyl)phenyl)porphyrin (p-CF(3)-TPP), meso-tetramesitylporphyrin (TMP), and meso-tetrakis(2,6-dichlorophenyl)porphyrin (2,6-Cl(2)-TPP). Population ratios of the reaction products, Mn(Por)(CN) and [Mn(Por)(CN)(2)](-), have been sensitively affected by the solvents used. In the case of Mn(T(i)PrP)Cl, the following results are obtained: (i) The bis-adduct is preferentially formed in dipolar aprotic solvents such as DMSO, DMF, and acetonitrile. (ii) Both the mono- and bis-adduct are formed in the less polar solvents such as CH(2)Cl(2) and benzene though the complete conversion to the bis-adduct is achieved with much smaller amount of the ligand in benzene solution. (iii) Only the mono-adduct is formed in CHCl(3) solution even in the presence of a large excess of cyanide. (iv) Neither the mono- nor the bis-adduct is obtained in methanol solution. The results mentioned above have been explained in terms of the C-H.N and O-H.N hydrogen bonding in chloroform and methanol solutions, respectively, between the solvent molecules and cyanide ligand; hydrogen bonding weakens the coordination ability of cyanide and reduces the population of the bis-adduct. The importance of the C-H.N weak hydrogen bonding is most explicitly shown in the following fact: while the starting complex is completely converted to the bis-adduct in CH(2)Cl(2) solution, the conversion from the mono- to the bis-adduct is not observed even in the presence of 7000 equiv of Bu(4)N(+)CN(-) in CHCl(3) solution. The effective magnetic moments of the bis-adduct has been determined by the Evans method to be 3.2 micro(B) at 25 degrees C, suggesting that the complex adopts the usual (d(xy))(2)(d(xz), d(yz))(2) electron configuration despite the highly ruffled porphyrin core expected for [Mn(T(i)PrP)(CN)(2)](-). The spin densities of [Mn(T(i)PrP)(CN)(2)](-) centered on the pi MO have been determined on the basis of the (1)H and (13)C NMR chemical shifts. Estimated spin densities are as follows: meso-carbon, -0.0014; alpha-pyrrole carbon, -0.0011; beta-pyrrole carbon, +0.0066; pyrrole nitrogen, -0.022. The spin densities at the pyrrole carbon and meso nitrogen atoms are much smaller than those of the corresponding [Mn(TPP)(CN)(2)](-), which is ascribed to the nonplanar porphyrin ring of [Mn(T(i)PrP)(CN)(2)](-). This study has revealed that the C-H.N weak hydrogen bonding is playing an important role in determining the stability of the manganese(III) complexes.     

The magnitude of [C-H...O] hydrogen bonding in molecular and supramolecular assemblies

Ab initio calculations at the MP2/6-311++G** level on model systems (N-methylpyridinium complexes of dimethyl ether and dimethyl phosphate anion) provide quantitative measures of the large stabilization energies that arise from [C-H...O] contacts in charged systems. These attractive interactions control (i) the self-assembly of bipyridinium-based catenanes and rotaxanes in solution, (ii) the self-organization of left-handed Z-DNA with alternating [dC-dG] sequences in the solid state, and (iii) the binding of pyridinium derivatives with single- and double-stranded DNA. Slightly attractive interactions occur between the donor ether and phosphate moieties and a neutral pyridine molecule in the gas phase. Electrostatic potential and solvation calculations demonstrate that [C-H...O] interactions which involve a cationic [C-H] donor are dominated by electrostatic terms.     

Supramolecular hydrogen bonding of [5,10,15,20‐tetrakis(4‐carboxyphenyl)porphyrinato]palladium(II) in the presence of competing solvents

The title porphyrin compound forms hydrogen‐bonded adducts with methanol (1:1), [Pd(C₄₈H₂₈N₄O₈)]·CH₄O, (I), and with water and N,N‐dimethylformamide (1:4:4), [Pd(C₄₈H₂₈N₄O₈)]·4C₃H₇NO·4H₂O, (II). In (I), the metalloporphyrin unit lies across a mirror plane in Cmca, while in (II), this unit lies across an inversion center in P. Extended supramolecular hydrogen‐bonded arrays are formed in (I) by intermolecular interactions between the carboxylic acid functions, either directly or through the methanol species. These layers have a wavy topology and large interporphyrin pores, which are filled in the crystal structure by double interpenetration as well as enclathration of additional non‐interacting nitrobenzene solvent molecules. The supramolecular aggregation in (II) can be characterized by cascaded porphyrin layers, wherein adjacent porphyrin molecules are hydrogen bonded to one another through molecules of water that are incorporated into the hydrogen‐bonding scheme. Molecules of dimethylformamide partly solvate the carboxylic acid groups and fill the interporphyrin space in the crystal structure.     

mer-[Fe III(bpca)(CN)3]-: a new low-spin iron(III) complex to build heterometallic ladder-like chains

The novel mononuclear complex PPh(4)-mer-[Fe(III)(bpca)(3)(CN)(3)].H(2)O (1) [PPh(4)(+) = tetraphenylphosphonium cation and bpca = bis(2-pyridylcarbonyl)amidate anion] and ladder-like chain compound [[Fe(III)(bpca)(micro-CN)(3)Mn(II)(H(2)O)(3)] [Fe(III)(bpca)(CN)(3)]].3H(2)O (2) have been prepared and characterized by X-ray diffraction analysis. Compound 1 is a low-spin iron(III) compound with three cyanide ligands in mer arrangement and a tridentate N-donor ligand building a distorted octahedral environment around the iron atom. Compound 2 is an ionic salt made up of cationic ladder-like chains [[Fe(III)(bpca)(micro-CN)(3)Mn(II)(H(2)O)(3)]](+) and uncoordinated anions [Fe(III)(bpca)(3)(CN)(3)](-). The magnetic properties of 2 correspond to those of a ferrimagnetic chain with significant intrachain antiferromagnetic coupling between the low-spin iron(III) centers and the high-spin manganese(II) cations. This compound exhibits ferrimagnetic ordering below 2.0 K.     

Magnitudes and chemical consequences of R(3)N(+)-C-H...O[double bond]C hydrogen bonding

The magnitude of the stabilizing interaction between an aliphatic C[bond]H bond attached to an ammonium nitrogen and a carbonyl oxygen was evaluated by ab initio calculations at the MP2/6-311++G** level of theory. Attractive R(3)N(+)-C-H...O[double bond]C interactions play an important role in supramolecular recognition and various types of stereoselective catalysis. Our calculations show that R(3)N(+)-C-H...O[double bond]C is the strongest hydrogen bond of the C-H...O type known to date. Such hydrogen bonds remain as stabilizing interactions even in water for amide acceptors.     

C-H...F hydrogen bonding: the origin of the self-assemblies of bis(2,2'-difluoro-1,3,2-dioxaborine)

The effect of the molecular structure on the self-assembly of specially designed two-core 1,3,2-dioxaborines has been studied with various techniques. It was found that the molecules spontaneously adsorbed on HOPG surfaces and self-organized into well-ordered two-dimensional (2D) monolayers. The structural details of the 2D assemblies were investigated by scanning tunneling microscopy (STM). From X-ray analysis of the corresponding three-dimensional (3D) crystal and from theoretical calculation, we were able to reveal the driving force behind the specific self-assembly. The C-H...F hydrogen bonding between the ortho carbon of the phenyl ring and the fluorine of the BF2 group plays an important role in the formation of the adlayers. The different electron affinities and geometries of the molecules affect the intermolecular interactions which further lead to different properties in the bulk materials.     

Diffusion controlled hydrogen atom abstraction from tertiary amines by the benzyloxyl radical. The importance of C-H/N hydrogen bonding

The rate constants for H-atom abstraction (k(H)) from 1,4-cyclohexadiene (CHD), triethylamine (TEA), triisobutylamine (TIBA), and DABCO by the cumyloxyl (CumO(?)) and benzyloxyl (BnO(?)) radicals were measured. Comparable k(H) values for the two radicals were obtained in their reactions with CHD and TIBA whereas large increases in k(H) for TEA and DABCO were found on going from CumO(?) to BnO(?). These differences are attributed to the rate-determining formation of BnO(?) C-H/amine N lone-pair H-bonded complexes.     

A low-spin d5 iron imide: nitrene capture by low-coordinate iron(I) provides the 4-coordinate Fe(III) complex [PhB(CH2PPh2)3]Fe=N-p-tolyl

Entry into "[PhBP3]Fe" chemistry affords a rare, pseudotetrahedral iron(I) complex, [PhBP3]Fe(PPh3), with an S = 3/2 ground state. This precursor undergoes rapid oxidation by aryl azide to produce the d5 imide [PhBP3]FeNAr (Ar = p-tolyl). The Fe(III) imide is significant in that it is low-spin and represents the first mononuclear imide of iron. Doublet [PhBP3]FeNAr reacts rapidly and quantitatively with CO at room temperature to release isocyanate and [PhBP3]Fe(CO)2. The [PhBP3]Fe(CO)2 byproduct is also a precursor to [PhBP3]FeNAr upon addition of aryl azide.     

Benzoannelation stabilizes the d(xy)1 state of low-spin iron(III) porphyrinates

A series of low-spin, six-coordinate complexes [Fe(TBzTArP)L(2)]X (1) and [Fe(TBuTArP)L(2)]X (2) (X = Cl(-), BF(4)(-), or Bu(4)N(+)), where the axial ligands (L) are HIm, 1-MeIm, DMAP, 4-MeOPy, 4-MePy, Py, and CN(-), were prepared. The electronic structures of these complexes were examined by (1)H NMR and electron paramagnetic resonance (EPR) spectroscopy as well as density functional theory (DFT) calculations. In spite of the fact that almost all of the bis(HIm), bis(1-MeIm), and bis(DMAP) complexes reported previously (including 2) adopt the (d(xy))(2)(d(xz), d(yz))(3) ground state, the corresponding complexes of 1 show the (d(xz), d(yz))(4)(d(xy))(1) ground state at ambient temperature. At lower temperature, the electronic ground state of the HIm, 1-MeIm, and DMAP complexes of 1 changes to the common (d(xy))(2)(d(xz), d(yz))(3) ground state. All of the other complexes of 1 and 2 carrying 4-MeOPy, 4-MePy, Py, and CN(-) maintain the (d(xz), d(yz))(4)(d(xy))(1) ground state in the NMR temperature range, i.e., 298-173 K. The EPR spectra taken at 4.2 K are fully consistent with the NMR results because the HIm and 1-MeIm complexes of 1 and 2 adopt the (d(xy))(2)(d(xz), d(yz))(3) ground state, as revealed by the rhombic-type spectra. The DMAP complex of 1 exists as a mixture of two electron-configurational isomers. All of the other complexes adopt the (d(xz), d(yz))(4)(d(xy))(1) ground state, as revealed by the axial-type spectra. Among the complexes adopting the (d(xz), d(yz))(4)(d(xy))(1) ground state, the energy gap between the d(xy) and d(π) orbitals in 1 is always larger than that of the corresponding complex of 2. Thus, it is clear that the benzoannelation of the porphyrin ring stabilizes the (d(xz), d(yz))(4)(d(xy))(1) ground state. The DFT calculation of the bis(Py) complex of analogous iron(III) porphyrinate, [Fe(TPTBzP)(Py)(2)](+), suggests that the (d(xz), d(yz))(4)(d(xy))(1) state is more stable than the (d(xy))(2)(d(xz), d(yz))(3) state in both ruffled and saddled conformations. The lowest-energy states in the two conformers are so close in energy that their ordering is reversed depending on the calculation methods applied. On the basis of the spectroscopic and theoretical results, we concluded that 1, having 4-MeOPy, 4-MePy, and Py as axial ligands, exists as an equilibrium mixture of saddled and ruffled isomers both of which adopt the (d(xz), d(yz))(4)(d(xy))(1) ground state. The stability of the (d(xz), d(yz))(4)(d(xy))(1) ground state is ascribed to the strong bonding interaction between the iron d(xy) and porphyrin a(1u) orbitals in the saddled conformer caused by the high energy of the a(1u) highest occupied molecular orbital in TBzTArP. Similarly, a bonding interaction occurs between the d(xy) and a(2u) orbitals in the ruffled conformer. In addition, the bonding interaction of the d(π) orbitals with the low-lying lowest unoccupied molecular orbital, which is an inherent characteristic of TBzTArP, can also contribute to stabilization of the (d(xz), d(yz))(4)(d(xy))(1) ground state.     

Electronic structure of highly ruffled low-spin iron(III) porphyrinates with electron withdrawing heptafluoropropyl groups at the meso positions

Bis(pyridine)[meso-tetrakis(heptafluoropropyl)porphyrinato]iron(III), [Fe(THFPrP)Py(2)](+), was reported to be the low-spin complex that adopts the purest (d(xz), d(yz))(4)(d(xy))(1) ground state where the energy gap between the iron d(xy) and d(π)(d(xz), d(yz)) orbitals is larger than the corresponding energy gaps of any other complexes reported previously (Moore, K. T.; Fletcher, J. T.; Therien, M. J. J. Am. Chem. Soc. 1999, 121, 5196-5209). Although the highly ruffled porphyrin core expected for this complex contributes to the stabilization of the (d(xz), d(yz))(4)(d(xy))(1) ground state, the strongly electron withdrawing C(3)F(7) groups at the meso positions should stabilize the (d(xy))(2)(d(xz), d(yz))(3) ground state. Thus, we have reexamined the electronic structure of [Fe(THFPrP)Py(2)](+) by means of (1)H NMR, (19)F NMR, and electron paramagnetic resonance (EPR) spectroscopy. The CD(2)Cl(2) solution of [Fe(THFPrP)Py(2)](+) shows the pyrrole-H signal at -10.25 ppm (298 K) in (1)H NMR, the CF(2)(α) signal at -74.6 ppm (298 K) in (19)F NMR, and the large g(max) type signal at g = 3.16 (4.2 K) in the EPR. Thus, contrary to the previous report, the complex is unambiguously shown to adopt the (d(xy))(2)(d(xz), d(yz))(3) ground state. Comparison of the spectroscopic data of a series of [Fe(THFPrP)L(2)](+) with those of the corresponding meso-tetrapropylporphyrin complexes [Fe(TPrP)L(2)](+) with various axial ligands (L) has shown that the meso-C(3)F(7) groups stabilize the (d(xy))(2)(d(xz), d(yz))(3) ground state. Therefore, it is clear that the less common (d(xz), d(yz))(4)(d(xy))(1) ground state can be stabilized by the three major factors: (i) axial ligand with low-lying π* orbitals, (ii) ruffled porphyrin ring, and (iii) electron donating substituent at the meso position.     

A low-spin alkylperoxo-iron(III) complex with weak Fe-O and O-O bonds: implications for the mechanism of superoxide reductase

The synthesis of a mononuclear, five-coordinate ferrous complex [([15]aneN4)FeII(SPh)](BF4) (1) is reported. This complex is a new model of the reduced active site of the enzyme superoxide reductase (SOR), which is comprised of a [(NHis)4(Scys)FeII] center. Complex 1 reacts with alkylhydroperoxides (tBuOOH, cumenylOOH) at low temperature to give a metastable, dark red intermediate (2a: R = tBu; 2b: R = cumenyl) that has been characterized by UV-vis, EPR, and resonance Raman spectroscopy. The UV-vis spectrum (-80 degrees C) reveals a 526 nm absorbance (epsilon = 2150 M-1 cm-1) for 2a and a 527 nm absorbance (epsilon = 1650 M-1 cm-1) for 2b, indicative of alkylperoxo-to-iron(III) LMCT transitions, and the EPR data (77 K) show that both intermediates are low-spin iron(III) complexes (g = 2.20 and 1.97). Definitive identification of the Fe(III)-OOR species comes from RR spectra, which give nu(Fe-O) = 612 (2a) and 615 (2b) cm-1, and nu(O-O) = 803 (2a) and 795 (2b) cm-1. The assignments for 2a were confirmed by 18O substitution (tBu18O18OH), resulting in a 28 cm-1 downshift for nu(Fe-18O), and a 46 cm-1 downshift for nu(18O-18O). These data show that 2a and 2b are low-spin FeIII-OOR species with weak Fe-O bonds and suggest that a low-spin intermediate may occur in SOR, as opposed to previous proposals invoking high-spin intermediates.     

High-spin to low-spin relaxation kinetics in the [Fe(TRIM)2]Cl2 complex

A quasi-quantitative photo-induced low-spin (LS)-->high-spin (HS) conversion of FeII ions has been observed in the [Fe(TRIM)2]Cl2 complex by irradiating the sample with blue light (488 nm) at 10 K. The time dependence of the HS-->LS relaxation has been studied between 10 K and 44 K by means of magnetic susceptibility measurements. These relaxation curves could be satisfactorily fitted by mono-exponential decays including tunnelling effect except for temperatures below 30 K. The introduction of a distribution of vibrational frequencies into this model improved significantly the fits in the low-temperature range and gave a good agreement with the experimental data in the whole temperature range suggesting a multi-rate relaxation process in this complex.     

Kinetic study of hydrogen peroxide reaction with hydroxonitrilotri(methylenephosphonato)iron(III) complex

The decomposition of hydrogen peroxide in the presence of hydroxonitrilotri(methylenephosphonato)iron(III), [Fe(NTMP)(OH)^4–], was studied in nitrate media (=0.10–0.26 M) over the 0.2–0.5 mM concentration range for the iron complex and the temperature range 26–40°C. The rate law;

Crystal structure of the N,N′,N″-triphenyl-guanidinium-bis-[η5-π-(3)-dicarbollide]Ni(III) complex

Single crystals of a new compound containing triphenylguanidinium and bis(dicarbollide)nickel(III) [C(NHC₆H₅)₃][Ni(B₉C₂H₁₁)₂] are obtained and analyzed by LOW-TEMPERATURE. Crystallographic data are: C₂₃H₄₀B₁₈N₃Ni, M = 611.87, monoclinic system, space group P2₁/c, unit cell parameters: a = 21.9085(5) Å, b = 19.9294(4) Å, c = 14.8721(4) Å, β = 91.4033(9)°, V = 6491,5(4) ų, Z = 8, d _x = 1.252 g/cm³, T = 100 K, F(000) = 2536, μ = 0.621 mm^?1. The structure was solved by direct and Fourier methods and refined by the full matrix least squares technique in the anisotropic/isotropic (for H atoms) approximation up to the final factor R ₁ = 0.053 for 10429 I _hkl ≥ 2σ _I (Bruker X8 APEX diffractometer, {ie547-1} radiation). It contains two independent [C(NHC₆H₅)₃]⁺ cations with different conformations and two [Ni(B₉C₂H₁₁)₂]^? anions with the same transoid conformation. Three types of weak intermolecular interactions are found: {ie547-2}; C-H…π between the H(C) atoms of cluster anions and delocalized π systems of Ph rings of cations; π…π interactions of Ph rings of cation 2 with each other.     

Determination of hydrogen peroxide by iron(III) complex of thiacalix[4]arenetetrasulfonate on a modified ion-exchanger with peroxidase-like catalytic activity.

An iron(III) complex of thiacalix[4]arenetetrasulfonate on a modified anion-exchanger (Fe3+-TCAS(A-500)) has shown high peroxidase-like activity at pH 5 - 6 for the reaction of quinoid-dye formation between 3-methyl-2-benzothiazolinone hydrazone and N-(3-sulfopropyl)aniline in the presence of hydrogen peroxide. Utilizing the peroxidase-like activity of Fe3+-TCAS(A-500) for this reaction, a method using Fe3+-TCAS(A-500) was applied for the spectrophotometric determination of hydrogen peroxide. The calibration curve by the method using Fe3+-TCAS(A-500) was linear over the range from 1 to 10 microg of hydrogen peroxide in a 1 ml sample solution. The apparent molar absorptivity for hydrogen peroxide was 2.4 x 10(4) l mol(-1) cm(-1). which was about 80% of that by peroxidase under the same conditions. This determination method of hydrogen peroxide using Fe3+-TCAS(A-500) was applied for the determination of glucose in diluted normal and abnormal control serum I and II.     

Assessment of density functionals for the high-spin/low-spin energy difference in the low-spin iron(II) tris(2,2'-bipyridine) complex.

In the iron(II) low-spin complex [Fe(bpy)3]2+, the zero-point energy difference between the 5T2g(t4(2g)e2g) high-spin and the 1A(1g)(t(6)2g) low-spin states, Delta(E)0HL, is estimated to lie in the range of 2500-5000 cm(-1). This estimate is based on the low-temperature dynamics of the high-spin-->low-spin relaxation following the light-induced population of the high-spin state and on the assumption that the bond-length difference between the two states Delta(r)HL is equal to the average value of approximately 0.2 A, as found experimentally for the spin-crossover system. Calculations based on density functional theory (DFT) validate the structural assumption insofar as the low-spin-state optimised geometries are found to be in very good agreement with the experimental X-ray structure of the complex and the predicted high-spin geometries are all very close to one another for a whole series of common GGA (PB86, PW91, PBE, RPBE) and hybrid (B3LYP, B3LYP*, PBE1PBE) functionals. This confirmation of the structural assumption underlying the estimation of Delta(E)0HL from experimental relaxation rate constants permits us to use this value to assess the ability of the density functionals for the calculation of the energy difference between the HS and LS states. Since the different functionals give values from -1000 to 12000 cm(-1), the comparison of the calculated values with the experimental estimate thus provides a stringent criterion for the performance of a given functional. Based on this comparison the RPBE and B3LYP* functionals give the best agreement with experiment.