Insights into copper coordination in the EcoRI–DNA complex by ESR spectroscopy

The EcoRI restriction endonuclease requires one divalent metal ion in each of two symmetrical and identical catalytic sites to catalyse double-strand DNA cleavage. Recently, we showed that Cu²⁺ binds outside the catalytic sites to a pair of new sites at H114 in each sub-unit, and inhibits Mg²⁺-catalysed DNA cleavage. In order to provide more detailed structural information on this new metal ion binding site, we performed W-band (～94 GHz) and X-band (～9.5 GHz) electron spin resonance spectroscopic measurements on the EcoRI–DNA–(Cu²⁺)₂ complex. Cu²⁺ binding results in two distinct components with different g_zz and A_zz values. X-band electron spin echo envelope modulation results indicate that both components arise from a Cu²⁺ coordinated to histidine. This observation is further confirmed by the hyperfine sub-level correlation results. W-band electron nuclear double resonance spectra provide evidence for equatorial coordination of water molecules to the Cu²⁺ ions.     

EPR studies of Cu<Superscript>2+</Superscript>-doped bis(saccharinato)bis(pyridine)zinc(II) single crystals

The electron paramagnetic resonance spectra of Cu²⁺ impurities in bis(saccharinato)bis(pyridine)zinc(II) single crystals have been studied at room temperature in three mutually perpendicular planes. The angular variation of the spectra indicates the substitution of the host Zn²⁺ with Cu²⁺. Two magnetically inequivalent sites for Cu²⁺ have been observed. The spectra were fitted to the rhombic spin Hamiltonian. The spin Hamiltonian parameters and the molecular orbital coefficients were evaluated for the two sites. The ground-state wave function of Cu²⁺ ion in the lattice has been constructed.     

Theoretical explanation of absorption spectra and ESR parameters of Cu in shattuckite

The optical absorption spectra and electronic spin resonance parameters (ESR g factors g_‖, g_⊥ and hyperfine structure constants A_‖, A_⊥) for Cu²⁺ in shattuckite crystal are calculated from the two spin–orbital coupling parameters model, high-order perturbation formulas and complete diagonalization (of energy matrix) method (CDM) of 3d⁹ ion in tetragonal symmetry. The calculated results are in good agreement with the observed values. Since the ESR parameters are sensitive to the local structure of a paramagnetic impurity center, the defect structure of Cu²⁺ center in shattuckite crystal is estimated. The results are discussed.     

Synthesis and characterization of Cu doped ZnS nanoparticles using TOPO and SHMP as capping agents

Undoped and Cu²⁺ doped (0.2-0.8%) ZnS nanoparticles have been synthesized through chemical precipitation method. Tri-n-octylphosphine oxide (TOPO) and sodium hexametaphosphate (SHMP) were used as capping agents. The synthesized nanoparticles have been analyzed using X-ray diffraction (XRD), transmission electron microscope (TEM), Fourier transform infrared spectrometer (FT-IR), UV-vis spectrometer, photoluminescence (PL) and thermo gravimetric-differential scanning calorimetry (TG-DTA) analysis. The size of the particles is found to be 4-6 nm range. Photoluminescence spectra were recorded for ZnS:Cu²⁺ under the excitation wavelength of 320 nm. The prepared Cu²⁺-doped sample shows efficient PL emission in 470-525 nm region. The capped ZnS:Cu emission intensity is enhanced than the uncapped particles. The doping ions were identified by electron spin resonance (ESR) spectrometer. The phase changes were observed in different temperatures.     

An EPR Study of Cu2+ Doped Sodium Hydrogen Oxalate Monohydrate Single Crystal

The EPR spectra of Cu²⁺ in Sodium hydrogen oxalate monohydrate, NaHC₂O₄.H₂O(SHOMH hereafter) single crystal was studied at room temperature. The angular variation of EPR spectra showed that the Cu²⁺ ion in SHOMH single crystal substitutes with Na⁺ monovalent cation together with a monovalent vacancy to compensate oxygen in the crystal. Since the crystal symmetry is triclinic, only one site is observed in the EPR spectra in three perpendicular axis. The spin Hamiltonian parameters were obtained, and the ground state wave function of Cu²⁺ ion in the lattice was constructed.     

Electron spin resonance studies of Cu2+ doped in cadmium maleate dihydrate single crystals

Electron spin resonance studies have been carried out on Cu²⁺ ion doped in single crystals of cadmium maleate dihydrate at 303 and 77K. It has been found that Cu²⁺ enters this lattice interstitially. The spin Hamiltonian parameters have been evaluated and the ground state wave function is found to be predominantly |X ² −Y ²〉 with a slight admixture of |3Z ² −r ²〉.     

Investigation of the local structure of Cu2+ ions doped in alkali lead tetraborate glasses by their electron paramagnetic resonance and optical spectra

The local structure of the Cu²⁺ centers in alkali lead tetraborate glasses was theoretically studied based on the optical spectra data and high-order perturbation formulas of the spin Hamiltonian parameters (electron paramagnetic resonance g factors g_∥, g_⊥ and hyperfine structure constants A_∥, A_⊥) for a 3d⁹ ion in a tetragonally elongated octahedron. In these formulas, the relative axial elongation of the ligand O^2? octahedron around the Cu²⁺ due to the Jahn–Teller effect is taken into account by considering the contributions to the g factors from the tetragonal distortion which is characterized by the tetragonal crystal-field parameters Ds and Dt. From the calculations, the ligand O^2? octahedral around Cu²⁺ is determined to suffer about 19.2% relative elongation along the C₄ axis of the alkali lead tetraborate glass system, and a negative sign for A_∥ and a positive sign for A_⊥ for these Cu²⁺ centers are suggested in the discussion.     

Determination of the ESR parameters of Cu2+ doped in CdC4H4O6 · 5H2O single crystals using a statistical calculation technique

Electron spin resonance spectra of Cu²⁺-doped cadmium tartrate pentahydrate single crystals grown by the diffusion technique have been investigated at 77 K. Two magnetically inequivalent Cu²⁺ lattice sites were identified. For each site four hyperfine lines and some additional weak forbidden hyperfine lines due to the quadrupole interaction were observed. The spectra were analyzed by a perfect least-squares procedure based on an appropriate statistical model to determine the spin-Hamiltonian parameters.     

EPR and optical studies of Cu doped ammonium dihydrogen phosphate single crystals

Electron paramagnetic resonance (EPR) spectra of Cu²⁺ ion in ammonium dihydrogen phosphate are studied at liquid nitrogen temperature (77 K). Four magnetically inequivalent Cu²⁺ sites in the lattice are identified. The angular variation spectra of the crystal in the three orthogonal planes indicate that the paramagnetic impurity, Cu²⁺ enters the lattice substitutionally in place of NH₄⁺ ions. The spin Hamiltonian parameters are determined with the fitting of spectra to rhombic symmetry crystalline field. The ground state wave function of Cu²⁺ ion is constructed and found to be predominantly |x²-y²〉. The cubic field parameter (Dq) and tetragonal parameters (Ds and Dt) are determined from optical spectra at room temperature. By correlating EPR and optical absorption spectra, the bonding coefficients are calculated and nature of bonding of metal ion with different ligands in the crystal is discussed.     

Theoretical investigations of the spin Hamiltonian parameters and local tetragonal distortions for Cu2+ in crystalline and amorphous TeO2 and GeO2

The spin Hamiltonian parameters (i.e., anisotropic g factors and hyperfine structure constants) and local tetragonal distortions for Cu²⁺ in crystalline and amorphous TeO₂ and GeO₂ are theoretically investigated using the high-order perturbation formulas of these parameters for a tetragonally elongated octahedral 3d⁹ cluster. The impurity Cu²⁺ occupying the octahedral sites are found to experience the relative tetragonal elongation ratios of about 11.4% and 9.5% for crystalline TeO₂ and GeO₂ and 10.8% and 6.6% for amorphous TeO₂ and GeO₂, respectively, along the C₄ axis due to the Jahn–Teller effect. This reveals the larger tetragonal elongation distortions for the Cu²⁺ centres in crystalline than amorphous systems (especially TeO₂). The theoretical spin Hamiltonian parameters show good agreement with the experimental data. The results are discussed.     

Interaction between 1-[p-(dimethylamino) benzoyl]-4′-phenyl-semicarbazide and Cu

A new compound, 1-[p-(dimethylamino)benzoyl]-4′-phenyl-semicarbazide (1) was synthesized and showed highly selective response to Cu²⁺ over other metal ions such as Pb²⁺, Mg²⁺, Fe²⁺, Co²⁺, Zn²⁺, Cd²⁺, Hg²⁺, Ni²⁺, Ca²⁺, Ag⁺, Na⁺, K⁺, and Li⁺. The control compound, 1-[p-(dimethylamino)benzoyl]-4-phenyl-thiosemicarbazide (2), showed different fluorescence spectral response to Cu²⁺. A 1:1 complex between Cu²⁺ and 1 was formed while 1:1 and 1:2 complexes between Cu²⁺ and 2 were formed. The binding model between the receptor (1 or 2) and Cu²⁺ was supported by IR spectra, mass spectra, and computation model. 1 possessed higher selectivity towards Cu²⁺ compared with 2 owing to the difference of complexation ability between urea and thiourea groups.     

A Computer Program to Help Resolution of Complex and Poorly Resolved Cu2+ and VO2+ Ions Doped Single Crystals Electron Paramagnetic Resonance Spectra

Complex and poorly resolved Cu²⁺ and VO²⁺ doped single-crystal electron paramagnetic resonance (EPR) spectra are some of the serious problems that exist in this area. In order to help the resolution of this sort of spectra, and for easily resolvable spectra as well, a versatile computer program known as EPR RESolution, or EPRES, is presented. All detectable line positions in the single-crystal spectra taken in three mutually perpendicular planes are given as input. The program plots these line positions. The user then manually determines the lines by selecting the true data points on the plot and fitting them to a well-known variation function. If selection is not suitable, the process is canceled and renewed. By this process, as many resolvable lines as in the spectra can be resolved and determined. The user then groups the resolved lines according to the paramagnetic center to which they belong. This includes the attribution of correct nuclear spin I and M _I to correct lines. After this step, hyperfine and g tensor elements can be found, constructed, and diagonalized.

[Supplemental materials are available for this article. Go to the publisher's online edition of Spectroscopy Letters for the following free supplemental resource: a copy of the EPRES computer program.]     

Phase transition in Cu2+-doped RbH2 PO4 as observed by EPR

The electron paramagnetic resonance (EPR) spectra of Cu²⁺-doped RbH₂ PO₄ at elevated temperatures indicate a phase transition at 358 K. The EPR-silent state at this temperature is attributed to a so-called polymeric phase transition. After the transition when the temperature is lowered to 293 K, the EPR signal does not appear; therefore, the transition is irreversible. This result seems to be in agreement with the other observations. The EPR spectra for the sample indicate the presence of two sites for Cu²⁺, and the values of EPR parameters are in accord with the literature on Cu²⁺-doped single crystals. Any other phase transitions could not to be observed at low temperatures down to 113 K.     

Theoretical investigation of the optical spectra and g factors for Cu2+ in dioptase

The optical spectra of Cu²⁺ in dioptase are calculated using crystal-field theory. Good agreement between measured and calculated energy values is obtained under D _4h point-symmetry approximation. The electron paramagnetic resonance g factors, g _// and g _⊥, are also investigated from high-order perturbation formulae. The local structure of Cu²⁺ in dioptase is obtained using these formulae. Theoretical results are in perfect agreement with experimental findings.     

EPR of Cu2+-doped Cs2CO3 and CsHCO3: evidence of the Jahn–Teller effect

Cu²⁺-doped Cs₂CO₃ and CsHCO₃ single crystals were investigated by electron paramagnetic resonance between 113–273 and 173–313 K, respectively. For both single crystals, two sites were observed for the Cu²⁺ at ambient temperature for arbitrary orientations of the single crystals in the magnetic field. However, when the temperature is varied, the spectra indicate the equivalence of the two sites at 225 and 240 K for the single crystals, respectively, to the above order. Below and above these temperatures two sites for Cu²⁺ appear, and below 133 and 173 K the signals do not vary and two sites were always observed. This is attributed to the transition of the dynamic Jahn–Teller effect to a static situation at lower temperatures. Cu²⁺ seems to replace Cs⁺ and the charge compensation is fulfilled by another Cs⁺. Spin-Hamiltonian parameters for both single crystals at ambient temperature are reported and discussed.     

Electron spin resonance study of the dynamic magnetic susceptibility of CuO, Cu1−x Zn x O, and Cu1−x Li x O single crystals

Results are presented of studies of the dynamic magnetic susceptibility of CuO, Cu_1?x Zn _x O (x ≈ 1.5%), and Cu_1?x Li _x O (x ≈ 1%) single crystals. The orientational dependence of the ESR spectra was investigated at room temperature. The results for CuO are analyzed using a model of a quasi-one-dimensional antiferromagnet (S = 1/2) with anisotropic exchange interaction between Cu²⁺ spins in the chains and exchange coupling between the chains allowing for one-dimensional spin diffusion and spinon excitations. The estimated line width is of the same order of magnitude as the experimental data. Substituting Cu with Zn scarcely alters the spin dynamics of the Cu²⁺ ions, as in weakly diluted magnets. Lithium doping substantially increases the ESR line width and this is attributed to excess holes forming rapidly relaxing spin complexes with copper ions.     

EPR studies of Cu2+ ion in CdK2 (SO4)2·6H2O single crystals

The EPR spectra of Cu²⁺ in CdK₂(SO₄)₂·6H₂O crystals have been studied at 77 K and 300 K in three (bc, a¹c and a¹b) planes. The angular variation spectra showed that the Cu²⁺ ion enters the Cd²⁺ site in the lattice. The principal g and A values, covalency parameter (α'²), mixing coefficients (α and β) and Fermi-contact term (K) have been evaluated from the EPR analysis. The ground-state wave function of the Cu²⁺ ion has been constructed using the α'², α and β values, and the signs for the hyperfine coupling constants are also determined. The covalency value indicates the percentage of unpaired spin density present at the metal (Cu²⁺) d orbital. The nature of the distortion present in the lattice is obtained from the values of the mixing coefficients.     

STUDIES ON COPPER-CONTAINING NAD GLYCOHYDROLASE FROM AGKISTRODON ACUTUS VENOM BY FLUORESCENCE AND CD SPECTROSCOPY

ABSTRACT

The properties of NAD Glycohydrolase (NADase), purified from Agkistrodon acutus venom, have been studied by fluorescence and CD spectroscopy. The fluorescence intensities of NADase decrease by about 1% or 3% when the concentrations of I^? ion are 0.1 mol/L or 0.2 mol/L in the NADase solutions, respectively. However, the fluorescence intensities of the NADase are quenched by about 25% and 48%, respectively, with further addition of 1 mmol/L EDTA into solutions. CD spectra also suggested that EDTA could remove Cu²⁺ ion from NADase molecule and the conformation of NADase changed much. So Cu²⁺ ion is very important to maintain the geometrical structure of NADase.     

Electron paramagnetic resonance study of Cu-Co interactions in Ba2Co(HCOO)64 H2O

Electron paramagnetic resonance studies of Cu²⁺ doped in single crystals of dibarium cobalt formate tetrahydrate are carried out. Unlike in other cobalt salts, resolved hyperfine spectra are observed at room temperature itself. At 77K, the hyperfine linewidth shows an angular and nuclear spin dependence. Further, the linewidth increases as the temperature is lowered. The various possibilities of Cu-Co couplings like spin-flip and cross relaxation etc. are discussed. The spin-Hamiltonian parameters change conspicuously as the temperature is lowered which is ascribed to a vibrational mixing of the electronic levels in the ground state of Cu²⁺.     

ESR of Cu2+ in the high pressure form of Cd3(PO4)2

ESR spectra of polycrystalline Cu²⁺ doped samples of the high pressure phase of Cd₃(PO₄)₂ were characteristic of the existence of two different paramagnetic centres. The spin—Hamiltonian constants of both defects were determined. Only two of the three possible substitutional cation sites are occupied by copper ions.