Effect of ligand coordination type on the relative stability of linear mercury clusters

The problem of stabilization of linear mercury clusters with acceptor ligands coordinated along the symmetry axis of the cluster is discussed in terms of the MNDO method. It is shown that stable four-membered rings Hg₂Cl₂ may be formed. It is proposed that the structure of linear mercury clusters with side coordination of ligands be described as the result of “polymerization” of short stable linear molecules XHg_nX (n=1, 2) and HgX ₂ ¹⁻ , HgX ₃ ¹⁻ ions with accepting terminal groups. Mordovia State University. Institute of Organoelement Compounds, Russian Academy of Sciences. Translated fromZhurnal Strukturnoi Khimii, Vol. 39, No. 1, pp. 26–34, January–February, 1998. This work was performed in the framework if the interindustry scientific and technical program “Fullerenes and Atomic Clusters.”     

On the relative stability of cyclic mercury clusters

Stabilization of cyclic mercury clusters is discussed using the MNDO method. The bonding character of the highest occupied molecular orbital is shown to be one of the essential criteria of the relative stability of these systems. This criterion max be satisfied by structures with both direct and indirect (via the bridging chlorine atoms) bonding of mercury atoms.     

Nonadditive interactions and the relative stability of neutral and anionic silver clusters

We discuss the physical nature of nonadditivity in many-particle systems and the methods of calculations of nonadditive contributions to the interaction energy. For neutral clusters, a closed recurrence formula which expresses the energy of m-body interactions through the energies of 2-, 3-, and (m – 1)-body ones is obtained. The general approach for calculation of the nonadditive contribution in the interaction energy of charged systems is developed. The comparative calculation of anionic and neutral silver clusters shows that the geometry of the most stable anionic clusters is established mainly by the additive forces. The stability of neutral silver clusters is determined by the competition of attractive additive forces and repulsive nonadditive ones. © 1995 John Wiley & Sons, Inc.     

Remarkable stacking behavior of linear oligosiloxanes featuring arylethynyl terminal groups

New organooligosiloxanes 1–5 (Scheme 1) featuring α ,ω -arylethynyl moieties have been synthesized. Complex ensembles of weak intramolecular interactions lead to the formation of interesting architectures, exhibiting the unusual U-shaped molecular geometry of compounds 1, 2 and 4, which has not been found previously example. Replacement of the methyl groups in 1 by phenyl substituents in the disiloxane 4 gives rise to the formation of hydrophobic monolayers different from the bilayer packing behavior of the analogous compound 1. Incorporation of methoxy substituted arene units in the α ,ω -positions completely abolishes intramolecular interactions as indicated in compound 5, which alsoshows the lowest degree of supramolecular contacts (while all the other packing structures are dominated by π -stacking andC-H···π interactions).     

Effect of terminal groups on the electronic structure of hyperbranched polyacetylene

Quantum mechanics calculations at B3LYP/6‐31G (d)//HF/3‐21G (d) level of the theory were carried out on second generation dendritic polyacetylenic oligomers bearing different terminal groups to clarify the impact of their nature on the electronic structure of hyperbranched polyacetylene. It was found that steric and electronic factors affect the electronic properties of the studied dendrimers. While the steric hindrances independently of the nature of a terminal group tend to increase band gap and ionisation potential and decrease electron affinity, the interaction of lone electron pairs and π‐electrons of the terminal groups with the rest of the molecule produces specific changes in the electronic structure of each particular group. A general feature of the studied dendrimers is that upon ionisation or addition of an electron to the dendrimer the molecules become more planar.     

Effect of polydispersity on the relative stability of hard-sphere crystals

By extending the nonequilibrium potential refinement algorithm and lattice switch method to the semigrand ensemble, the semigrand potentials of the fcc and hcp structures of polydisperse hard-sphere crystals are calculated with the bias sampling scheme. The result shows that the fcc structure is more stable than the hcp structure for polydisperse hard-sphere crystals below the terminal polydispersity.     

Effect of substituents on the relative stability of furoxan isomers

The overall energy of isomers of substituted furoxans has been calculated using the MINDO/3 method. Comparison with experimental results indicated that the calculation correctly predicted the structure of the more stable isomer. Correlation of the difference of the overall energy of the isomers (E) with the induction and resonance constants of the substituents, and comparison of the values of E calculated from the correlation equation with the experimental values have also been carried out.Translated from Khimiya Geterotsiklicheskikh Soedinenii, No. 2, pp. 264–266, February, 1986.     

Ultraviolet stability of liquid crystals containing cyano and isothiocyanato terminal groups

The ultraviolet (UV) stabilities of liquid crystal compounds containing cyano (CN) and isothiocyanato (NCS) terminal groups are compared. UV exposure is found to degrade the clearing temperature, birefringence, dielectric constants and visco-elastic coefficient of the liquid crystal compounds. The measured data show that the NCS molecular structure exhibits a better UV stability than do the corresponding CN structures. Lewis resonance structures are used to explain this phenomenon.     

Ultraviolet stability of liquid crystals containing cyano and isothiocyanato terminal groups

The ultraviolet (UV) stabilities of liquid crystal compounds containing cyano (CN) and isothiocyanato (NCS) terminal groups are compared. UV exposure is found to degrade the clearing temperature, birefringence, dielectric constants and visco-elastic coefficient of the liquid crystal compounds. The measured data show that the NCS molecular structure exhibits a better UV stability than do the corresponding CN structures. Lewis resonance structures are used to explain this phenomenon.     

Structures and relative stability of medium-sized silicon clusters. IV. Motif-based low-lying clusters Si21-Si30

Structures and relative stability of four families of low-lying silicon clusters in the size range of Sin(n=21-30) are studied, wherein two families of the clusters show prolate structures while the third one shows near-spherical structures. The prolate clusters in the first family can be assembled by connecting two small-sized magic clusters Sin (n=6, 7, 9, or 10) via a fused-puckered-hexagonal-ring Si9 unit (a fragment of bulk diamond silicon), while those in the second family can be constructed on the basis of a structural motif consisting of a puckered-hexagonal-ring Si6 unit (also a fragment of bulk diamond silicon) and a small-sized magic cluster Sin (n=6, 7, 9, or 10). For Si21-Si29, the predicted lowest-energy clusters (except Si27) exhibit prolate structures. For clusters larger than Si25, the third family of near-spherical clusters becomes energetically competitive. These near-spherical clusters all exhibit endohedral cagedlike structures, and the cages are mostly homologue to the carbon-fullerene cages which consist of pentagons and hexagons exclusively. In addition, for Si26-Si30, we construct a new (fourth) family of low-lying clusters which have "Y-shaped" three-arm structures, where each arm is a small-sized magic cluster (Si6, Si7, or Si10). Density-functional calculation with the B3LYP functional shows that this new family of clusters is also energetically competitive, compared to the two prolate and one near-spherical low-lying families.     

Effect of terminal amino acids on the stability and specificity of PNA-DNA hybridisation

The effect of various charged or hydrophobic amino acids on the hybridisation of fully complementary and mismatch PNA-DNA duplexes was investigated via UV melting curve analysis. The results described here show that the thermal stability and binding specificity of PNA probes can be modified by conjugation to amino acids and these effects should be considered in experimental design when conjugating PNA sequences to solubility enhancing groups or cell transport peptides. Where stabilisation of a duplex is important, without there being a corresponding need for specific binding to fully complementary targets, the conjugation of multiple lysine residues to the C-terminus of PNA may be the best probe design. If, however, the key is to obtain maximum discrimination between fully complementary and mismatch targets, a replacement of glutamic acid for lysine as the routine solubility enhancing group is recommended.     

Effect of monovacancies on the relative stability of fcc and hcp hard-sphere crystals

We report results of Monte Carlo simulations showing that the presence of vacancies does not affect the relative stability of stress-free fcc and hcp hard-sphere crystals.     

The investigation on the relative stability of different clusters of thiourea dioxide in water using gas phase quantum chemical calculations

The relative stability of different clusters of thiourea dioxide (TDO) in water is examined using gas phase quantum chemical calculations at the MP2 and B3LYP level with 6‐311++G(d,p) basis set. The possible equilibrium structures and other energetic and geometrical data of the thiourea dioxide clusters, TDO‐(H₂O)_n (n is the number of water molecules), are obtained. The calculation results show that a strong interaction exists between thiourea dioxide and water molecules, as indicated by the binding energies of the TDO clusters progressively increased by adding water molecules. PCM model is used to investigate solvent effect of TDO. We obtained a negative hydration energy of ?20.6 kcal mol^?1 and free‐energy change of ?21.0 kcal mol^?1 in hydration process. On the basis of increasing binding energies with adding water molecules and a negative hydration energy by PCM calculation, we conclude thiourea dioxide can dissolve in water molecules. Furthermore, the increases of the C? S bond distance by the addition of water molecules show that the strength of the C? S bonds is attenuated. We find that when the number of water molecules was up to 5, the C? S bonds of the clusters, TDO‐(H₂O)₅ and TDO‐(H₂O)₆ were ruptured. © 2009 Wiley Periodicals, Inc. Int J Quantum Chem, 2009     

Biaxial ordering of terminal diene groups in lipid membranes: an infrared linear dichroism study

The molecular order within the hydrophobic core of membranes of the diene lipid di-tetradecadienoylphosphatidylcholine was studied by means of infrared spectroscopy on multibilayer assemblies which orient macroscopically on the surface of an attenuated total reflection crystal. The relative humidity and temperature were used as variable parameters to demonstrate that there were profound differences in the melting transition of lipids possessing predominantly cis and trans diene groups. The cis isomer undergoes the phase transition at a vapor pressure which is increased by 0.15 GPa when compared with that of the trans isomer. The methylene wagging band progression gives no indication of differences between the acyl chain conformation of the cis and trans forms in the gel state. The frequencies of a number of absorption bands of the diene groups reveal that these moieties are predominantly in the s-trans conformation to accommodate a favorable packing within the bilayer. The linear dichroism of selected in-plane and out-of-plane vibrations of the diene groups gives indications of the biaxial ordering of these moieties. We present the basic equations for the quantitative analysis of IR dichroism data of lamellar structures in terms of transverse and longitudinal molecular order parameters. It turns out that the planes of the rigid diene groups orient preferentially in a perpendicular direction with respect to the bilayer surface and parallel to each other forming in this way a layer of well-aligned diene groups in the bilayer center. This finding is confirmed by the results of X-ray measurements. We suggest that the partial interdigitation of the diene groups of the sn-1 acyl chains promotes the formation of the inverse H_II phase and/or enables the formation of covalent bonds between both the monolayers upon polymerization of diene lipids.     

A theoretical investigation of the relative stability of hydrated glycine and methylcarbamic acid--from water clusters to interstellar ices

We have theoretically investigated how the low-energy conformers of the neutral and the zwitterionic forms of glycine as well as methylcarbamic acid are stabilized by the presence water. The MP2/6-311++G(d,p) method was utilized to conduct calculations on glycine and methylcarbamic acid in both isolated clusters and in clusters embedded in the conductor-like polarizable continuum model (C-PCM), where the clusters explicitly contain between one and ten water molecules. The neutral forms of glycine and methylcarbamic acid were found to have similar hydration energies, whereas the neutral methylcarbamic acid was determined to be approximately 32 kJ mol(-1) more stable than the neutral glycine in the isolated clusters and 30 kJ mol(-1) more stable in the C-PCM embedded clusters. Both the number and strength of the hydrogen bonding interactions between water and the zwitterions drive the stability. This lowers the relative energy of the glycine zwitterion from 50 kJ mol(-1) above neutral glycine, when there are two water molecules in the clusters to 11 kJ mol(-1) below for the clusters containing ten water molecules. For the methylcarbamic acid clusters with two water molecules, the zwitterion is 51 kJ mol(-1) higher in energy than the neutral form, but it remains 13 kJ mol(-1) above the neutral methylcarbamic acid in the clusters containing ten water molecules. When the bulk water environment is simulated by the C-PCM calculations, we find both the methylcarbamic acid and glycine zwitterionic forms have similar energies at 20 kJ mol(-1) above the neutral methylcarbamic acid energy and 10 kJ mol(-1) lower than the neutral glycine energy. Although neither methylcarbamic acid nor glycine have been detected in the interstellar medium yet, our findings indicate that methylcarbamic acid is the more stable product from methylamine and carbon dioxide reactions in a water ice. This suggests that methylcarbamic acid likely plays a role in the intermediate steps if glycine is formed in the interstellar medium.     

Interactions of linear carbon clusters

Collisions of linear carbon clusters are investigated theoretically using the MINDO/3 method. It is shown that if a collision of two clusters transfers the system into a bound state, at the next step a four-or three-pronged star is formed. If the prongs are not closed in rings, the system evolves to a linear isomer due to “migration of atoms through the center”, which is a diffusion mechanism, by which the atoms overcome relatively small barriers to migrate through the center of the star from one prong to another. When a prong is reduced to two atoms, it is absorbed. If one or two pairs of prongs have time for cyclization, the final product is a monocyclic or bicyclic isomer. Institute of Theoretical and Applied Mechanics, Siberian Branch, Russian Academy of Sciences. Institute of Computational Technologies, Siberian Branch, Russian Academy of Sciences. Translated fromZhurnal Strukturnoi Khimii, Vol. 36, No. 6, pp. 983–990, November–December, 1995. Translated by I. Izvekova     

Structures and relative stability of medium-sized silicon clusters. V. Low-lying endohedral fullerenelike clusters Si31-Si40 and Si45

We have performed unconstrained search for low-lying structures of medium-sized silicon clusters Si(31)-Si(40) and Si(45), by means of the minimum-hopping global optimization method coupled with a density-functional based tight-binding model of silicon. Subsequent geometric optimization by using density-functional theory with the PBE, BLYP, and B3LYP functionals was carried out to determine the relative stability of various candidate low-lying silicon clusters obtained from the unconstrained search. The low-lying characteristics of these clusters can be affirmed by comparing the binding energies per atom of these clusters with previously determined lowest-energy clusters(Si(n)) in the size range of 21相似文献