Effect of polyion conformation on dye binding. I. Fluorescence of acridine orange in the presence of synthetic polyacids

The interaction between polyelectrolytes and Acridine Orange (AO) has been investigated in the case of poly(acrylic acid) (PAA), poly(methacrylic acid) (PMA), and a polycondensate between 1,3-benzene disulfonyl chloride and L -lysine (PLL) by visible absorption and fluorescence spectroscopy. The influence of both polymer ionization and polymer/dye ratio (P/D) on the spectral behavior of the bound dye has been studied. The stacking tendency of AO is found lower in the presence of PLL under compact conformation (in an ionization range depending on the nature of the counterion) with correlated enhancement of the green fluorescence of the monomeric species of the bound dye. The disappearance of the green fluorescence and the dimerization of bound AO are directly related to the increased flexibility of polyion chains upon ionization. Some analogy is found between the behavior of bound AO in the presence of very compact PLL chains and that reported for AO in the presence of native DNA, which might be due to specific interactions responsible for a kind of “intercalation” of the monomeric bound dye.     

Effect of polyion conformation on dye binding. IV. Fluorescence of auramine O in relation to its binding to synthetic polyacids

The effect of polymer conformation, polymer concentration, and added salt concentration on the quantum yield ? of Auramine O (AuO) is discussed in connection with dialysis equilibrium data. The quantum yield per bound dye molecule (?/q) assumes different values which are related principally to solvation changes in the environment of the binding sites. Binding to globular compact a states results in high ?/q, whereas low ?/q (of the order of magnitude of ? of free AuO) are observed for the binding to expanded solvated b states. The quantum yield of bound AuO is therefore affected by the organic nature of the environment, but shows little or no relation to the amount of bound dye molecules.     

Effect of polyion conformation on dye binding. V. Induced optical activity of acridine orange bound to a synthetic nonstereoregular polyelectrolyte

It is shown that the induced Cotton effects in the visible region of the absorption bands of acridine orange in the presence of a nonstereoregular α-carboxylic polysulfonamide (PLL) can be attributed to stacked bound dye molecules, irrespective of the conformation of the polymer. The existence of an ordered structure seems to be unnecessary for such an induction.     

Multiwavelength spectral correction for the simultaneous determination of Cu(II), Fe(II), and Zn(II) with 1-(5-bromo-2-pyridylazo)-2-naphthol-6-sulfonic acid

A new analytical method is described for the simultaneous determination of various components by multiwavelength spectrophotometry. Because of the influence of the free ligand and various complexes on spectrophotometric absorption, the spectral correction principle was used to establish the calculation matrix formula. The 3 sensitive reactions of Cu(II), Fe(II), and Zn(II), with 1-(5-bromo-2-pyridylazo)-2-naphthol-6-sulfonic acid were studied at pH 10.5. In analyses of fortified samples, the recoveries of Fe, Zn, and Cu were between 93.0 and 103%, 87.0 and 108%, and 92.5 and 108%, respectively; the relative standard deviations for 5 determinations of Fe, Zn, and Cu in unfortified ore were 3.6, 5.8, and 4.5%, respectively.     

Properties of a novel acid dye 1-amino-4-[(6-nitro-2-benzothiazolyl)amino]-9,10-anthraquinone-2-sulfonic acid with anti-UV capability

<正>A novel acid dye acid was synthesized by the condensation reaction between bromamine acid and 2-amino-6-nitrobenzothiazole and its anti-UV protection properties were evaluated.The results showed that silk dyed with this dye had very good ultraviolet radiation protection capability and excellent dyeing performance.The UV-absorption mechanism of this dye was also discussed.     

The binding of manganese(II) and zinc(II) to the synthetic oligonucleotide d(C-G-C-G-A-A-T-T-C-G-C-G)2. A 1H NMR study

The interaction of the synthetic oligonucleotide d(C-G-C-G-A-A-T-T-C-G-C-G)2 with two different transition-metal ions has been investigated in aqueous solution by means of 1H NMR spectroscopy. The effects on the DNA due to the presence of manganese(II) or zinc(II) have been monitored by observing the paramagnetic broadening and diamagnetic shifts of the non-exchangeable proton resonance lines, respectively. The 1H NMR spectra acquired during the course of the manganese(II) titration show very distinct broadening effects on certain DNA resonance lines. Primarily, the H8 resonance of G4 is affected, but also the H5 and H6 resonances of C3 are clearly affected by the metal. The results imply that the binding of manganese(II) to DNA is sequence specific. The 1H spectra obtained during the zinc(II) titration reveal diamagnetic shift effects which largely conform with the paramagnetic broadening effects due to the presence of manganese(II), although this picture is somewhat more complex. The H8 resonance of G4 displays a clearly visible high-field shift, while for the other guanosine H8 protons this effect is absent. The H1' and H2' protons of C3 show an effect of similar strength, although in the opposite direction, while H5 and H6 of C3 are only slightly affected. Local differences in the structure of the DNA and the basicities of potential binding sites on different base steps in the sequence might account for the observed sequence selectivity.     

The reaction between palladium(II) and complexes of 8-quinolinol-5-sulfonic acid

Anomalous results for the reaction between palladium(II) and fluorescent complexes of 8-quinolinol-5-sulfonic acid were found to be due to a slow reaction. Heating the solution permits the determination of palladium(II) in combination with copper(II) or nickel(II), the two cations being titrated stepwise The approximate value for the overall formation constant of the PdL₂^2- complex was determined.     

Linkage isomerism in the binding of pentapeptide Ac-His(Ala)3His-NH2 to (ethylenediamine)palladium(II): effect of the binding mode on peptide conformation

The reaction of the pentapeptide Ac-His1-Ala2-Ala3-Ala4-His5-NH2 (AcHAAAHNH2) (1) with [Pd(en)(ONO2)2] (en = NH2CH2CH2NH2) in either DMF-d(7) or H2O:D2O (90%:10%) gave three linkage isomers of [Pd(en)(AcHAAAHNH2)](2+) (2), 2a, 2b, and 2c, which differ only in which pair of imidazole nitrogen atoms bind to Pd. In the most abundant isomer, 2a, Pd is bound by N1 from each of the two imidazole rings. In the minor isomers 2b and 2c, Pd is bound by N1(His1) and N3(His5) and by N3(His1) and N1(His5), respectively. The reactions of [Pd(en)(ONO2)2] with the N-methylated peptides Ac-(N3-MeHis)-Ala-Ala-Ala-(N3-MeHis)-NH2 (AcH*AAAH*NH2) (3), Ac-(N3-MeHis)-Ala-Ala-Ala-(N1-MeHis)-NH2 (AcH(*)AAAH(#)NH2) (4), and Ac-(N1-MeHis)-Ala-Ala-Ala-(N3-Me-His)-NH2 (AcH(#)AAAH(*)NH2) (5) each gave a single species [Pd(en)(peptide)](2+) in N,N-dimethylformamide (DMF) or aqueous solution, 7, 8, and 9, respectively, with Pd bound by the two nonmethylated imidazole nitrogen atoms in each case. These complexes were analogous to 2a, 2b, and 2c, respectively. Ac-(N1-MeHis)-Ala-Ala-Ala-(N1-MeHis)-NH2 (AcH(#)AAAH(#)NH2) (6) with [Pd(en)(ONO2)2] in DMF slowly gave a single product, [Pd(en)(AcH(#)AAAH(#)NH2)](2+) (10), in which Pd was bound by the N3 of each imidazole ring. The corresponding linkage isomer of 2 was not observed. Complex 10 was also the major product in aqueous solution, but other species were also present. All compounds were exhaustively characterized in solution by multinuclear 1D ((1)H , (13)C, and, with (15)N-labeled ethylenediamine, (15)N) and 2D (correlation spectroscopy, total correlation spectroscopy, transverse rotating-frame Overhauser effect spectroscopy (T-ROESY), heteronuclear multiple-bond correlation, and heteronuclear single quantum coherence) NMR spectra, circular dichroism (CD) spectra, electrospray mass spectroscopy, and reversed-phase high-performance liquid chromatography. ROESY spectra were used to calculate the structure of 2a, which contained a single turn of a peptide alpha helix in both DMF and water, the helix being better defined in DMF. The Pd(en)(2+) moiety was not used in structure calculations, but its location and coordination by one imidazole N1 from each histidine to form a 22-membered metallocycle were unambiguously established. Convergence of the structures was greatest when calculated with two hydrogen-bond constraints (Ala4 peptide NH...OC acetyl and His5 peptide NH...OC-His1) that were indicated by the low temperature dependence of these NH chemical shifts. Vicinal HN-CHalpha coupling constants and chemical shifts of alpha-H atoms were also consistent with a helical conformation. Similar long-range ROE correlations were observed for [Pd(en)(AcH(*)AAAH(*)NH2)](2+) (7), which displayed a CD spectrum in aqueous solution that suggested the presence of some helicity. Long-range ROE correlations were not observed for 8, 9, or 10, but a combination of NMR data and CD spectroscopy was interpreted in terms of the conformational behavior of the coordinated pentapeptide. Only for the linkage isomer [Pd(en)(AcH(*)AAAH(#)NH2)](2+) (8) was there evidence of a contribution from a helical conformation. The data for 8 were interpreted as interconversion between the helix and random coil conformations. Zn(2+) with peptides gave broad NMR peaks attributed to lability of this metal ion, while reactions of cis-[Pt(NH3)2(ONO2)2] were slow, giving a complex mixture of products rather than the macrochelate ring observed with Pd(en)(2+). In summary, these studies indicate that Pd(en)(2+) coordinates to histidine with similar preference for each of the two imidazole nitrogens, enabling the formation of up to four linkage isomers in its complexes with pentapeptides His-xxx-His. Only the N1-N1 linkage isomer that forms a 22-membered macrochelate ring is able to induce an alpha-helical peptide conformation, whereas the 20- and 21-membered rings of linkage isomers do not. This suggests that linkage isomeric mixtures may compromise histidine coordination to metal ions and reduce alpha-helicity.     

Determination of trace amounts of cobalt using 1-(5-bromo-2-pyridylazo)-2-naphthol-6-sulfonic acid-Cu(II)-Co(II) competitive replacement complexation

The chromophore 1-(5-bromo-2-pyridylazo)-2-naphthol-6-sulfonic acid (BPANS) has been used to sensitively complex Cu(II) and Co(II) in aqueous solution at pH 9.43. The spectral correction technique was applied to characterize the complexes, and results showed that both Cu(BPANS)2 and Co(BPANS)2 were formed. Trace Co2+ replaced the Cu(II) in the Cu-BPANS complex, so the competitive replacement complexation (CRC) was used to improve the analytical selectivity. A novel light-absorption ratio variation approach (LARVA) was described as one of the most sensitive methods. The combination of CRC and LARVA was applied to the quantitative detection of Co(II) at the ng/mL level. The limit of detection was only 2.0 ng/mL Co, and the analysis of water samples demonstrated satisfactory results.     

Scavenging of UO2 2+ using 4-sulfonic calix[6]arene in the presence of goethite

The scavenging of UO₂ ²⁺ using 4-sulfonic calix[6]arene in the presence of a strong adsorbent was studied as a function of pH. The adsorbent selected was goethite because of its strong affinity for UO₂ ²⁺ and its abundance in natural soils. In order to understand the underlying chemistry of the scavenging process, the adsorption of UO₂ ²⁺ and 4-sulfonic calix[6]arene onto goethite, respectively, and the extraction of adsorbed UO₂ ²⁺ from goethite surface were modeled using the triple-layer model. The model well explained the pH dependence of the adsorption and extraction processes. This work showed that maximum extraction was obtained around pH 10.5 in the presence of 12g/l goethite in the case of a 1:3T _U(VI):T _calixareneratio.     

Kinetically controlled separation of cadmium(II) from zinc(II) with dithizone in the presence of nitrilotriacetic acid.

The extraction rates of cadmium(II) and zinc(II) with dithizone (H2dz) in the presence of nitrilotriacetic acid (NTA) were measured, and the possible kinetic separation of cadmium(II) from zinc(II) was investigated. Upon the addition of NTA, the difference in the extraction rate between cadmium(II) and zinc(II) became large. Based on the observed rate constant under the condition [NTA] = 1 x 10(-2) mol dm-3, [H2dz]org = 1 x 10(-3) mol dm-3, and pH = 7.0, the shaking time required for the quantitative separation of cadmium(II) from zinc(II) was calculated to be between 326 and 995 s. The experimental results agreed with the prediction, and the quantitative separation of cadmium(II) from zinc(II) was performed within the above-mentioned range of shaking times.     

Sorption and diffusion of a tribasic acid dye in nylon 6 membrane in the presence of NaCl

Measurements of sorption and diffusion of a tribasic acid dye in nylon 6 membranes in the presence of NaCl are reported and critically analyzed by the dual-mode sorption and diffusion models consisting of either simple partition plus ion exchange, or simple partition plus “Langmuir” modes. It is shown that the former treatment, which is the physically more realistic one, also provides a generally better fit to the data.     

Complexes of chromium(III) with 2,3-dihydroxynaphthalene-6-sulfonic acid and 4,5-dihydroxynaphthalene-2,7-disulfonic acid in aqueous solution

The chromium(III) complex species formed, in acidic and basic solutions at 25.0+/-0.1 degrees C, between Cr(III) and 2,3-dihydroxynaphthalene-6-sulfonic acid (2,3-DHN-6-SA, H(2)L(2-)) and 4,5-dihydroxynaphthalene-2,7-disulfonic acid (4,5-DHN-2,7-DSA, H(2)L(-)) were determined. Over the acidic pH range, the coordination of 2,3-DHN-6-SA and 4,5-DHN-2,7-DSA to Cr(III) in 1 : 1 mole ratio occurs, and CrL and CrL(-) type complexes are formed. At near neutral pH, CrL(OH)(-) and CrL(OH)(2-) type hydroxo complexes are formed. The acid-dissociation constants of ligands and the formation constants of chromium(III) complexes were determined in 0.1 m KNO(3) ionic medium by potentiometric titration using the BEST computer program. Thus, the removing capacities of these ligands could be examined by calculating the equilibrium concentration of Cr(III) that exists in the discharge water of various industries since Cr(III) ions are the main pollutants present during waste water treatment in our city, Bursa.     

Amino acid derivatives that stabilize secondary structures of polypeptides : II. The most stable conformation of peptides containing 3-amino-2-piperidone-6-carboxylic acid (Acp)

From ¹H NMR evidence, the conformation of the piperidone ring of 3-amino-6-carboxyl-2-piperidone (ACP) in the derivatives Ac-Acp-NHET. Cbz-Gly-Acp-OEt, Cbz-Gly-Acp-Gly-OEt, Boc-$\text{L}$-Phe-$\text{LL}$-Acp-$\text{L}$-Ala-OCH₃, and Boc-$\text{L}$-Phe-$\text{DD}$-Acp-$\text{L}$-Ala-OCH₃ is shown to be a chair with the RCONH function equatorially and the CONHR′ function axially disposed. An internal hydrogen bond of the β-turn type is proposed for these amide derivatives.     

Modeling of copper(II) and lead(II) adsorption on kaolinite-based clay minerals individually and in the presence of humic acid

The aim of this study is to explain how clay minerals adsorb heavy metals individually and in the presence of humic acid, and to model heavy metal adsorption specifically based on surface-metal binary and surface-metal-ligand ternary complexation. The adsorption of Cu(II) and Pb(II) on kaolinite-based clay minerals has been modeled by the aid of the FITEQL3.2 computer program using single- and double-site binding models of the Langmuir approach. Potentiometric titrations and adsorption capacity experiments were carried out in solutions containing different concentrations of the inert electrolyte NaClO4; however, the modeling of binary and ternary surface complexation was deliberately done at high ionic strength (0.1 M electrolyte) for eliminating adsorption onto the permanent negatively charged sites of kaolinite. A "two-site, two pKa" model was adapted, and as for the two surface sites responsible for adsorption, it may be arbitrarily assigned that [triple bond]S1OH sites represent silanol and organic functional groups such as carboxyl having pKa values close to that of silanol, and [triple bond]S2OH sites represent aluminol and organic functional groups such as phenolics whose pKa values are close to that of aluminol, as all the studied clays contained organic carbon. Copper(II) showed a higher adsorption capacity and higher binding constants, while lead(II), being a softer cation (in respect to HSAB theory) preferred the softer basic sites with aluminol-phenol functional groups. Heavy metal cations are assumed to bind to the clay surface as the sole (unhydrolyzed) M(II) ion and form monodentate surface complexes. Cu(II) and Pb(II) adsorption in the presence of humic acid was modeled using a double-site binding model by the aid of FITEQL3.2, and then the whole system including binary surface-metal and surface-ligand and ternary surface-metal-ligand complexes was resolved with respect to species distributions and relevant stability constants. Electrostatic effects were accounted for using a diffuse layer model (DLM) requiring minimum number of adjustable parameters. Metal adsorption onto clay at low pH increased in the presence of humic acid, and the metal adsorption vs pH curves of metal-kaolinite-humic acid suspensions were much steeper (and distinctly S shaped) compared to the wider pH-gradient curves observed in binary clay-metal systems. The clay mineral in the presence of humic acid probably behaved more like a chelating ion-exchanger sorbent for heavy metals rather than being a simple inorganic ion exchanger.     

Cyclization of 2-methoxy-6-(substituted benzyloxy)acetophenone hydrazones in the presence of polyphosphoric acid(PPA)

Cyclization of 2-methoxy-6-benzyloxy acetophenone hydrazone gave 3-methyl-4-meth-oxy indazole and 3-methyl-4-methoxy-7-benzyl indazole in the presence of polyphosphoric acid(PPA).The hydrazone was probably converted to 2-hydroxy-6-methoxy acetophenone hydra-zone and 2-hydroxy-3-benzyl-6-methoxy acetophenone hydrazone followed by cyclization to thecorresponding indazoles in acidic conditions.Cyelization of 2-methoxy-6-(halo or alkyl or arylbenzyloxy)acetophenone hydrazones gave similar products.Cyclization of 2-methoxy-6-(p-nitrobenzyloxy)acetophenone hydrazone gave 2-(p-nitrophenyl)-3-methyl-4-methoxy benzo-furan and 3-methyl-4-methoxy indazole while 2-methoxy-6-(m-nitrobenzyloxy)acetophenonehydrazone gave 3-methyl-4-methoxy indazole,3-methyl-4-methoxy-7-(m-nitrophenyl)indazole and3-methyl-4-(m-nitrobenzyloxy)indazole.     

Chemical and photoluminescence properties of purified poly(2-methoxyaniline-5-sulfonic acid) and oligomer

Both the chemical and the electrochemical synthesis of poly(2-methoxyaniline-5-sulfonate) (PMAS) in aqueous media have been found to give two distinct polymer fractions with molecular weights of approximately 8-10 and 2 kDa, respectively. It is now possible to isolate the pure high molecular weight (HMWT) PMAS and low molecular weight (LMWT) PMAS oligomer and to study their individual and combined photochemistry and redox chemistry. The HMWT PMAS fraction was confirmed to be an emeraldine salt by its characteristic redox and pH switching behavior, in contrast to the oligomeric LMWT PMAS, which was inert under the same conditions. Mixtures of these two fractions exhibit photoluminescence arising from the oligomeric LMWT PMAS fraction. The observed LMWT PMAS emission was modulated by the presence of the conducting HMWT PMAS emeraldine salt via a static resonant energy transfer arising from quenching at 460 nm when excited at 355 nm. The nonlinear fluorophore-quencher behavior suggests that the two PMAS fractions are strongly associated. The behavior fitted the static Perrin quenching model in which the oligomeric LMWT PMAS fluorophore is diffusionally restricted by the presence of HMWT PMAS quencher.