N-[[5-[[(1,4-二氢-2-甲基-4-氧-6-喹唑啉基)甲基]甲氨基]-2-噻吩基]羰基]-L-谷氨酸的一水合甲醇溶剂合物的合成、晶体结构及Hirshfeld表面分析

合成制备了N-[[5-[[(1,4-二氢-2-甲基-4-氧-6-喹唑啉基)甲基]甲氨基]-2-噻吩基]羰基]-L-谷氨酸的一水合甲醇溶剂合物(C21H22N4O6S·CH3OH·H2O(化合物1)的晶体,通过单晶X射线衍射,红外,热重分析表征.分析其含有一个结晶水和一分子甲醇溶剂,晶胞参数为a=7.9730(16)nm,b=13.558(3)nm,c=11.412(2)nm,α=90°,β=91.12(3)°,γ=90°.采用Hirshfeld表面分析方法对分子间作用力分析.Hirshfeld表明作用分析得到的二维指纹图显示,其中O…H,N…H,C…H,S…H的作用力要强与C…O,C…N作用力,其中H…H作用力明显.     

Crystal and molecular structure of di-μ-chlorobis[2-[[[(2-hydroxy-1-naphthyl)methyl]imino]-ethanolato]N,O,O′]di-copper(II) hemihydrate

The structure of the title compound [Cu₂Cl₂(C₁₃H₁₂NO₂)₂]·1/2 H₂O has been determined from single crystal X-ray diffraction data by direct methods. Full-matrix least-squares refinement of the structural parameters led to conventionalR factor of 0.037 for 4367 intensities above 3(I). The compound forms a dinuclear complex with distorted tetragonal-pyramidal geometry at each copper center. The unsymmetrical dimers are formed by weak axial coordination to one copper center by chloride ligands which are in the base plane of the adjacent copper atom. The apical Cu1-C12 and Cu2-C11 distances are 2.788(1) and 3.130(1) Å, respectively. The Cu1-Cu2 separation is 3.4995(3) Å in the dimers. A disorder of one five-membered chelate ring has been observed. Two alternative positionsa andb of the C26 atom were found and refined with constrained bond lengths. The geometry of the ligand and hydrogen bonds is discussed.     

Crystal and molecular structure of di-μ-chlorobis[2-[[[(2-hydroxy-1-naphthyl)methyl]-imino]ethanolato]N,O,O′]di-copper(II) dihydrate

The crystal structure of the title compound has been determined from three-dimensional, single crystal X-ray diffraction data. [Cu₂Cl₂(C₁₃H₁₂NO₂)₂]·2H₂O crystallizes in the orthorhombic space group P2₁2₁2₁ with lattice constants,a=11.866(2),b=13.555(3),c=17.380(3) Å. Final full-matrix least-squares refinement of 3735 unique reflections yieldedR=0.054. The structure consists of dimeric C₂₆H₂₄Cl₂Cu₂N₂O₄ molecules and water molecules connected with the dimeric molecules by a hydrogen bond system. Both of the copper(II) centers are five-coordinated by twotrans oxygen atoms and one nitrogen atom from one ligand molecule and two chloride ions. The geometry at each copper(II) center is best described as distorted tetragonal pyramidal. The apical Cu1–Cl2 and Cu2–C11 distances are 2.747(2) and 2.938(3)Å, respectively. The Cu...Cu separation is 3.496(1)Å. The comparison with previously reported crystal structure of [Cu₂Cl₂ (C₁₃H₁₂NO₂)₂]·1/2H₂O is given.     

Synthesis,Crystal Structure,and Antibacterial Activity of Di-μ-chlorido-bis({2-[(4-methoxyphenyl)-iminomethyl]pyridine-κ2N,N'] Mercury(II)

Crystallography Reports - A coordination polymer [Hg(L)Cl2]n consisting of HgCl2 and Schiff base bidentate ligand (4-methoxyphenyl) pyridine-2yl methyleneamine (L) was prepared and structurally...     

Structure of N,N′-bis[3-(aminocarbonyl)propyl]sulfamide

The title compound, C₈H₁₈N₄O₄S, possesses C₂ symmetry, with the S atom lying on a twofold rotational axis in the unit cell. The sulfamide group of each molecule forms four identical hydrogen bonds with those of its four neighboring molecules, resulting in a rhombic two-dimensional hydrogen bonded network. This network assembles in the third dimension via hydrogen bonds between the primary amide groups of the substituents that extend from the 2D sulfamide sheets. The primary amide groups form a hydrogen-bonded eight-membered cyclic dimer around a two-fold rotational axis. These cyclic dimers are linked into a ribbon-like network via hydrogen bonding interaction between the trans-H and the carbonyl of the amide groups. The compound crystallizes in C2/ca with a = 8.6162(1), b = 57716(1), c = 24.8344(b) Å, = 96.298(1)°, D _calc = 1.441 g cm^–3, and Z = 4.     

Crystal and molecular structure of (3aR,8bS,5′R)3-[(2,5-dihydro-3-methyl-2-oxo-5-furanyl)oxymethylene]-3,3a,4,8b-tetrahydroindeno[1,2-b]furan-2-one

The stereogeometry and absolute configuration of the title compound has been proved by an X-ray diffraction analysis. Crystal data: monoclinic, C2,a=20.2528(4),b=6.7254(2),c=10.6748(2) Å, =94.699(3),Z=4. The crystal structure has been solved by vector search methods and refined toR ₁=0.053 for 2043 observed reflections.     

Structural,theoretical, and third-order nonlinear optical investigations of N’-[(E)-(4-bromophenyl)(phenyl)methylidene]–4-methylbenzenesulfonohydrazide

Single crystals of N’-[(E)-(4-bromophenyl) (phenyl) methylidene]–4-methylbenzenesulfonohydrazide (4BBTH), having potential applications in nonlinear electro optic field. The structure is elucidated by single crystal X-ray diffraction analysis. The functional groups are identified by FT-IR analysis. The band gap energy is estimated using diffuse reflectance data by the application of Kubelka–Munk algorithm. Third-order nonlinear optical properties of the grown crystal were derived by employing a single beam Z-scan technique. Theoretical calculations were performed using density functional theory (DFT) method. Estimated large first-order molecular hyperpolarizality of 9.79 times of urea, suggests a charge transfer atmosphere facilitating micro level nonlinearity.GRAPHICAL ABSTRACT     

Molecular structure and absolute configuration of (+)-(1R, 2S, 6R, 7S, 1′R)-5-(1′-phenylethylamino)-endo-tricyclo[5.2.1.02,6]deca-4,8-dien-3-one

The crystal and molecular structure of (+)-(1R, 2S, 6R, 7S, 1R)-5-(1-phenylethylamino)-endo-tricyclo[5.2.1.0^2,6]deca-4,8-dien-3-one is described. Based on the known absolute configuration (R) of the -phenylethylamine moiety the X-ray analysis revealed the absolute configuration of the title compound. The structure was refined to R ₁ = 0.0298 for 1950 reflections (with I > 2(I)). Crystal data: C₁₈H₁₉NO, monoclinic, space group P2₁, a = 6.7406(4), b = 9.959(2), c = 11.3123(8)Å, = 102.969(5), V = 740.0(2)ų, and Z = 2.     

Crystal Structure, Absolute Configuration, Conformational Analysis and Molecular Dynamics Study of the Novel Steroidal Tetrazole Derivative: (25R)-3,12a-diaza-A,C-bishomo-5α-spirostano[3,4-d] [12a,12d] bistetrazole [HS-989]

Abstract  

The X-ray crystal structure of the bistetrazole steroid derivative: (25R)-3,12a-diaza-A,C-bishomo-5α-spirostano[3,4-d] [12a,12d] bistetrazole (HS-989) has been determined at room temperature. The crystals are orthorhombic, space group P2₁2₁2₁ with a = 16.855(1) ?, b = 25.048(2) ?, c = 6.402(1) ?, V = 2702.7(5) ?³ Z = 4, Density (calculated) = 1.250 Mg/m³. The tetrazole-modified 7-membered rings A and C have similar modified uniaxial chair conformations, with pseudo-symmetry m through the extra C–N tetrazole bond; the 6-membered rings B and F are symmetrical chairs; of the 5-membered rings, D is in a half-chair and ring E an envelope conformation; tetrazole rings T1 and T2 are both planar and oriented towards the α-face. The spirostan moiety is β-oriented. Overall the modified steroid skeleton is reasonably flat, with a pseudo-torsion angle C(19)–C(10)···C(13)–C(18) of −6.2°. Conformational sampling, using high temperature SYBYL molecular dynamics was used to investigate different arrangements of the steroid skeleton. Predicted low energy conformations were found to compare favourably in some respects with both X-ray crystallographic and NMR observations but with important differences.     

Molecular structure and absolute configuration of (−)-(1R, 2S, 6R, 7S, 2′S)-5-(2′-hydroxymethylpyrrolidin-1′-yl)-endo-tricyclo[5.2.1.02,6]deca-4,8-dien-3-one

The crystal and molecular structure of (–)-(1R, 2S, 6R, 7S, 2S)-5-(2-hydroxymethyl-pyrrolidin-1-yl)-endo-tricyclo[5.2.1.0^2,6]deca-4,8-dien-3-one is described. Knowing the absolute configuration of the prolinol moiety (S) the X-ray diffraction study established the absolute configuration of the title compound. The structure was refined to R ₁ = 0.0322 for 1237 reflections (with I > 2(I)). Crystal data: C₁₅H₁₉NO₂, monoclinic, space group P2₁, a = 6.0757(4), b = 11.3473(5), c = 9.5114(7)Å, = 104.686(6)°, V = 634.32(7)ų, and Z = 2.     

Synthesis,Crystal Structure and Cytotoxic Property of <Emphasis Type="Italic">catena</Emphasis>-Poly[[{2-[2-(methylamino)ethyliminomethyl]-4-nitrophenolato}Zinc(II)]-μ-acetato]

Abstract  

The acetato-bridged polymeric Schiff base zinc(II) complex [Zn(MENP)(CH₃COO)]_n (MENP = 2-[2-(methylamino)ethyliminomethyl]-4-nitrophenolate) was synthesized and characterized by elemental analysis, IR and single-crystal X-ray diffraction. The crystal belongs to the monoclinic system, space group P2₁/c with a = 14.054(2), b = 11.167(1), c = 9.323(2) ?, β = 92.053(2)°, V = 1462.2(4) ?³, Z = 4, R ₁ = 0.0420 and wR ₂ = 0.1019. The Zn atom is coordinated in a trigonal–bipyramidal manner by one Schiff base ligand and two bridging acetate anions. The adjacent Zn···Zn distance is 4.727(2) ?. The [Zn(MENP)] units are linked through the bridging acetate groups, forming chains running along the c axis. The complex shows slight cytotoxic property to both normal and carcinoma cells.     

X-ray crystal structure of cis-{(±)-6,6′-[[1,1′-biphenyl]-2,2′-diylbis(oxy)]bis–dibenzo[d,f][1,3,2]dioxaphosphepin} diiodoplatinum(II)·dichloromethane

Bis(dibenzo[d,f][1,3,2]dixoaphosphepin) ligands are extensively used in catalysts for asymmetric alkene hydroformylation; however, few crystal structures of complexes of these ligands have been reported. In this paper, the synthesis and X-ray crystal structure of cis-{(±)-6,6-[[1,1-biphenyl]-2,2-diylbis(oxy)]bis-dibenzo[d,f][1,3,2]dioxaphosphepin} diiodoplatinum (II)·dichloromethane are presented. This complex crystallizes in the triclinic space group P1¯ with a = 12.0842(2,3) b = 12.6993(15) c = 13.2801(18) Å; = 85.852(10), = 76.723(13), = 72.400(12)°, V = 1890.7(10) ų and Z = 4. The diastereomer that has crystallized has an R*R*R*(S*S*S*) configuration. This X-ray crystal structure supports previous observations that bis(phosphite) ligands with bridging groups derived from 2,2-biphenol can exhibit a wide range of bite angles (>20°).     

Crystal structure of 9,12-ethano-12a-methoxycarbonyl-5, 8a,9,12,12a,12b-hexahydro-6H-[1,2]dioxino[4′,5′:4,5] isoxazolo[3,2-a]isoquinoline, C17H19NO5

The title compound crystallizes in the space group P2₁/n, with a = 18.423(3), b = 9.628(3), c = 19.243(2) Å, = 116.208(8)°, with two independent molecules in the asymmetric unit, which are not enantiomers. The chiral centers C8a, C9, C12, C12a, C12b are either S,R,S,R,R or R,S,R,S,S, respectively, because of the centric space group.     

Crystal Structure of 3′-(4-Methoxyphenyl)-2-Phenyl-4′-(4-Ethoxyphenyl)-1,2-Dihydro-4H,4′H-Spiro [Isoquinoline-3,5′-Isoxazol]-4-One

The title compound, 3′-(4-methoxyphenyl)-2-phenyl-4′-(4-ethoxyphenyl)-1,2-dihydro-4H,4′H-spiro[isoquinoline-3,5′-isoxazol]-4-one was synthesized from the reaction of dipolarophile with p-methoxybenzadoxime in the presence of sodium hypochlorite in chloroform solution. The structure of the synthesized compound was determined by IR, ¹H NMR, mass spectroscopic data, ¹³C NMR spectroscopy, elemental analysis and X-ray crystallography. The structure was solved in monoclinic, space group C2/c with a = 21.941 (4), b = 17.233 (3), c = 15.404 (3) Å, β = 122.193 (2), V = 4928.9 (16) Å³, Z = 8 and with R_int = 0.154. The geometry of the title compound showed that the piperidine ring adopts a half-chair conformation. In the crystal structure, molecules are linked by C–H···O and C–H···N contacts. Weak C–H···π interactions plays an important role in stabilizing the supramolecular structure.     

Synthesis and Structural Characterization of [2-(2-1H-Imidazoly)-1H-imidazolium nitrate] and [2-(2-1H-Imidazoly)-2H-imidazolium phthalyl glycinate] Based on the 2,2′-bi-1H-Imidazole Molecule

Abstract  

Two new compounds (H₃biim)(NO₃)(1) and (H₄biim)(phthgly)₂ (2) (H₂biim=biimidazole; Hphthgly=N-phthaloylglycine) have been synthesized and characterized by luminescence and single crystal X-ray diffraction study. Compound 1 crystallizes in the monoclinic space group C2/c, where a = 14.8078(15), b = 5.9233(6), c = 20.028(2) ?, β = 92.7910(10)°, V = 1754.6(3) ?³ and Z = 8. Compound 2 crystallizes in the monoclinic space group P2(1)/n, where a = 15.3775(14), b = 5.3200(6), c = 6.4689(18)?, β = 115.418(2)° V = 1216.9(2)?³ and Z = 4. In 1, the N–H groups of H₃biim⁺ and the oxygen atoms of NO₃ ⁻ are linked by hydrogen bonds leading to H₃biim⁺(N,N)–R₂²(10) and N–H···O interactions forming infinite 1D helical chains along the b-axis. Compound 2 consists of a planar diprotonated biimidazole moiety and two phthgly anions which connect to the dication by hydrogen bonds phthgly⁻(O,O)–R₂²(9).     

Structure of two 1,3-dioxane derivatives from 4′, 5′-dimethylfurocoumarins: 4a, 11a-dihydro-4a, 11a-dimethyl-8H-pyrano[3′,2′∶5,6]benzofuro[3,2-e]-1, 3-dioxan-8-one and 7a,11a-dihydro-7a,11a-dimethyl-2H-pyrano[2′, 3′∶4,5]benzofuro[3,2-d] (1,3) dioxan-2-one

Treatment of dimethylated psoralen and angelicin in the 4, 5-position leads to the formation of 1,3-dioxane derivatives, resulting from the condensation of an 1,3-dioxane ring to the 4, 5-positions of the dihydrofurocoumarin moiety. The structures of these new compounds, 4a, 1 1a-dihydro-4a, 11a-dimethyl-8H-pyrano [3, 25,6]benzofuro[3,2-e]-1, 3-dioxan-8-one (C₁₅H₁₄O₅) (1) and 7a, 11a-dihydro-7a, 11a-dimethyl-2H-pyrano[2, 34, 5]benzofuro[3, 2-d](1, 3)dioxan-2-one (C₁₅H₁₄O₅) (2) have been assigned by¹H and¹³C NMR measurements, mass spectrometry results, and X-ray analysis. Compound (1): triclinic,P¯1,a=9.847(2),b=8.927(2),c=8.334(2) Å,=95.98(2),=108.81(3), =106.73(3)°; compound (2): triclinic,P¯1,a=7.296(4),b=7.481(2),c=11.812(4) Å,=91.67(2),=95.97(4), =94.20(3)°. The structures were solved by direct methods and refined by full-matrix least squares toR=0.050 (1) and 0.056 (2). In both compounds the coumarin rings can be regarded as coplanar, while the five-membered ring adopts an envelope conformation and the 1,3-dioxane ring a chair conformation.     

Crystal and molecular structure of 2-(7-cyanonorcaran-7-yl)-5-(ethoxycarbonyl)-4,5,6,11b-tetrahydro(Δ4-1,2,4-oxadiazolino)-[2,3-a]-β-carboline,C23H24N4O3

The structure of the title compound, C₂₃H₂₄N₄O₃, was determined by X-rays.M _r =404.47, orthorhombic, space groupPna2₁; unit cell dimensionsa=9.0386(4),b=28.0249(14),c=7.8936(9) Å,V _c =1999.49(3) ų,Z=4,D _x =1.344 Mg m^–1. CuK radiation (graphite crystal monochromator, =1.54178 Å),(CuK)=0.699 mm^–1,F(000)=856,T=295 K. Final conventionalR-factor=0.030,R _w =0.037 for 3215 unique reflections and 366 variables. The structure was solved by automated rotation functions in vector space, usingDirdif. The absolute configuration of the structure is reported.     

Hydrogen-bonded dimer of N,N′-(5-n-butyl-5-oxodibenzo[b,d]phosphole-3,7-diyl)bis(benzamide) dimethylformamide solvate

The structure of a large wing-span phosphine, in the oxide form, N,N-(5-n-butyl-5-oxodibenzo[b,d]phosphole-3,7-diyl)bis(benzamide), C₃₀H₂₇N₂O₃P, cocrystallized with dimethylformamide (DMF), C₃H₇NO, is reported. The title compound is crystallized in a triclinic system with cell dimensions of a = 10.295(8) b = 12.743(5) c = 13.239(6) Å, = 108.14(3), = 108.16(5), = 101.20(4)°, and V=1484.4(5) ų, and forms a hydrogen-bonded dimer via two hydrogen bond linkages of the P—O ··· H—N type involving one of the two amide groups.     

Crystal and Molecular Structure Studies of 1′-Benzyl-8-(4-fluorobenzyl)-8-azaspiro[bicyclo-[3.2.1]octane-3,4′-imidazolodine]-2′,5′-dione

Abstract  

The title compound, C₂₃H₂₃FN₃O₂ has been synthesized and the structure was investigated by X-ray diffraction studies. The compound crystallizes in the triclinic crystal class in the space group P[`1]P\overline{1} with cell parameters a = 9.345(2) ?, b = 10.940(3) ?, c = 11.986(4) ?, α = 72.349(6)°, β = 68.106(18)°, γ = 66.867(5)°, Z = 2 and V = 1027.8(5) ?³. The hydantoin ring adopts a planar conformation and is affected by the π conjugation. The pyrrolidine and piperidine rings in the bicyclo octane moiety adopt envelope and chair conformations respectively. The structure exhibits both inter and intramolecular hydrogen bonds of the type N–H···O, C–H···O and C–H···N. One of the oxygen atoms attached to the hydantoin ring simultaneously accepts two hydrogen bonds to form a three centered hydrogen bonding pattern.