Ab initio study on adsorption of hydrated Na+ and Cu+ cations on the Cu(111) surface

The interactions of Na+ and Cu+ cations with a Cu(111) surface in the presence and absence of water molecules were investigated using cluster models and ab initio methods. Adsorption in aqueous solution was modeled with one to five water molecules around the adsorbing cation. The Cu surface was described with Cu10 and Cu18 cluster models and the computational method was MP2/RECP/6-31+G. The effect of the basis set superposition error (BSSE) was taken into account with counterpoise (CP) correction, and the accuracy of HF-level results was examined. The interactions between Na+ and the Cu surface were found to be primarily electrostatic, and the energy differences among the different adsorption sites were small. The largest CP-corrected MP2 adsorption energy for the Cu18 cluster was -188 kJ/mol. When water molecules were added around it, Na+ receded from the Cu surface and finally was surrounded totally by the water molecules. The interactions between Cu+ and the Cu surface were dominated by orbital interactions, and Cu+ preferred to adsorb on sites where it could bind to more than one surface atom. The largest CP-corrected MP2 adsorption energy for the Cu18 cluster was -447 kJ/mol. Adding water molecules around it did not cause Cu+ to draw away from the surface, but instead the water molecules began to form hydrogen bonds with one another. The magnitude of BSSE was substantial in most cases. CP corrections did not, however, have a significant impact on the relative trends among the interaction energies.     

Ab initio study on the adsorption of hydrated Na+ and Ag+ cations on a Ag(111) surface

The interactions of Na(+) and Ag(+) cations with an Ag(111) surface in the presence and absence of water molecules were investigated with cluster models and ab initio methods. The Ag surface was described with two-layered Ag(10) and Ag(18) cluster models, and MP2/RECP/6-31+G(d) was used as the computational method. The effect of the basis set superposition error (BSSE) was taken into account with counterpoise (CP) correction. The interactions between Na(+) and Ag(111) surface were found to be primarily electrostatic, and the interaction energies and equilibrium distances at the different adsorption sites were closely similar. The largest CP-corrected MP2 adsorption energy for Na(+) was -190.2 kJ/mol. Owing to the electrostatic nature of the Na(+)-Ag(111) interaction, Na(+) prefers to be completely surrounded by water molecules rather than directly adsorbed to the surface. Ag(+)-Ag(111) interactions were much stronger than Na(+)-Ag(111) interactions because they were dominated by orbital contributions. The largest CP-corrected MP2 adsorption energy for Ag(+) was -358.9 kJ/mol. Ag(+) prefers to adsorb on sites where it can bind to several surface atoms, and in the presence of water molecules, it remains adsorbed to the surface while the water molecules form hydrogen bonds with one another. The CP correction had an effect on the interaction energies but did not change the relative trends.     

Decoupling surface reconstruction and perchlorate adsorption on Au(111)

On Au(111) electrodes, the investigation of ClO₄⁻ adsorption is hampered by a simultaneous surface reconstruction. We demonstrate that these two processes can be decoupled in cyclic voltammograms by a proper choice of the scan rate and of the initial potential. Our approach allowed the establishment of a relation between potentials of zero charge for the reconstructed and unreconstructed Au(111) surfaces.     

Tail molecule dependence of thiolate adsorption on Au(111) surface: Theoretical study

The adsorption of thiolates with various tail molecules on the Au(111) surface has been investigated by first-principles calculations. We have considered six typical thiolate molecules, that is, methylthiolate, ethylthiolate, ethylenethiolate, acetylenethiolate, benzenethiolate, and thiophenethiolate. It is found that these thiolates exhibit little difference in their stable adsorption geometries. They are adsorbed at the bridge site with being significantly tilted from the surface normal. The adsorption energy of thiolate on Au, on the other hand, largely varies depending on the type of tail molecule, and is linearly proportional to the binding energy of thiolate with H. We discuss the tail molecule dependence in terms of the bonding environment around the C atom connected to the head S atom.     

Organic probe molecule adsorption on extended Au(111) surface: a theoretical DFT study

Research on Chemical Intermediates - The cluster approach has been applied to mimic the interactions of probe trans-1,2-bis-(4-pyridyl) ethylene on a gold surface with the aim of discriminating the...     

Experimental and theoretical study of the adsorption of fumaramide [2]rotaxane on Au(111) and Ag(111) surfaces

Thin films of fumaramide [2]rotaxane, a mechanically interlocked molecule composed of a macrocycle and a thread in a "bead and thread" configuration, were prepared by vapor deposition on both Ag(111) and Au(111) substrates. X-ray photoelectron spectroscopy (XPS) and high-resolution electron-energy-loss spectroscopy were used to characterize monolayer and bulklike multilayer films. XPS determination of the relative amounts of carbon, nitrogen, and oxygen indicates that the molecule adsorbs intact. On both metal surfaces, molecules in the first adsorbed layer show an additional component in the C 1s XPS line attributed to chemisorption via amide groups. Molecular-dynamics simulation indicates that the molecule orients two of its eight phenyl rings, one from the macrocycle and one from the thread, in a parallel bonding geometry with respect to the metal surfaces, leaving three amide groups very close to the substrate. In the case of fumaramide [2]rotaxane adsorption on Au(111), the presence of certain out-of-plane phenyl ring and Au-O vibrational modes points to such bonding and a preferential molecular orientation. The theoretical and experimental results imply that the three-dimensional intermolecular configuration permits chemisorption at low coverage to be driven by interactions between the three amide functions of fumaramide [2]rotaxane and the Ag(111) or Au(111) surface.     

Molecular orbital study for Na, Mg, and Al adsorption on the Si (111) surface

We investigated the interactions between the Si(111) surface and the Na, Mg, and Al atoms using cluster model calculations. Calculations were performed at levels of complete-active-space self-consistent-field (CASSCF) and multi-reference singly and doubly excited configuration interaction (MRSDCI) calculations using the model core potential method. Our calculations revealed that the most favorable sites of Na, Mg, and Al adsorption on Si(111) are on top (T₁), bridge (B₂), and 3-fold filled (T₄) sites, respectively. The nature of chemical bonds between these metal atoms and the dangling bonds of the surface Si atoms are found to be essentially covalent.     

Effect of coverage and defects on the adsorption of propanethiol on Au(111) surface: a theoretical study

Periodic density functional calculations have been carried out to investigate both the thiol adsorption on Au(111) surface and the reaction mechanism for the formation of the self-assembled monolayers, taking propanethiol as a representative example. The effect of coverage and surface defects (adatoms and vacancies) has been analyzed. It is found that the most stable physisorption (undissociated) site is an adatom site, whereas the chemisorption site for the thiol is a vacancy site or protrusion consisting of a pair of adatoms, followed by one adatom site. The results point out that the thiolate self-assembled monolayer adsorption process occurs preferentially on step edges.     

Synthesis of TiO2 nanoparticles on the Au(111) surface

The growth of titanium oxide nanoparticles on reconstructed Au(111) was investigated by scanning tunneling microscopy and x-ray photoelectron spectroscopy. Ti was deposited by physical-vapor deposition at 300 K. Regular arrays of titanium nanoparticles form by preferential nucleation of Ti at the elbow sites of the herringbone reconstruction. The titanium oxide nanoclusters were synthesized by subsequent exposure to O(2) at 300 K. Two-and three-dimensional titanium oxide nanocrystallites form during annealing in the temperature range from 600 to 900 K. At the same time, the Au(111) surface assumes a serrated 110-oriented step-edge morphology suggesting step-edge pinning by titanium oxide nanoparticles. The oxidation state of the titanium oxide nanoparticles varies with annealing temperature. Specifically, annealing to 900 K results in the formation of stoichiometric TiO(2) nanocrystals as judged by the Ti(2p) binding energies measured in the x-ray photoelectron data. The nanodispersed TiO(2) on Au(111) is an ideal system to test the various models proposed for the enhanced catalytic reactivity of supported Au nanoparticles.     

Drastic Au(111) surface reconstruction upon insulin growth factor tripeptide adsorption

Adsorption of biomolecules at metal surfaces often creates two-dimensional ordering of the adlayers. However, metal substrate reconstruction is less commonly observed, unless upon annealing of the molecule-surface system. Here, we report on the drastic room-temperature reconstruction of the Au(111) surface, driven by the adsorption of insulin growth factor tripeptide molecules. Scanning tunneling microscopy images show that the surface reconstruction, which takes place without annealing the system, is dynamic and evolves over time. It is initiated at kinks and steps edges, but the reconstruction also takes place within defect-free terraces. Theoretical calculations are performed to explain the reconstruction at the molecular level.     

Coverage-dependent adsorption geometry of octithiophene on Au(111)

The adsorption behavior of α-octithiophene (8T) on the Au(111) surface as a function of 8T coverage has been studied with low-temperature scanning tunneling microscopy, high resolution electron energy loss spectroscopy as well as with angle-resolved two-photon photoemission and ultraviolet photoemission spectroscopy. In the sub-monolayer regime 8T adopts a flat-lying adsorption geometry. Upon reaching the monolayer coverage the orientation of 8T molecules changes towards a tilted configuration, with the long molecular axis parallel to the surface plane, facilitating attractive intermolecular π-π-interactions. The photoemission intensity from the highest occupied molecular orbitals (HOMO and HOMO - 1) possesses a strong dependence on the adsorption geometry due to the direction of the involved transition dipole moment for the respective photoemission process. The change in molecular orientation as a function of coverage in the first molecular layer mirrors the delicate balance between intermolecular and molecule/substrate interactions. Fine tuning of these interactions opens up the possibility to control the molecular structure and accordingly the desirable functionality.     

Theoretical study of benzonitrile clusters in the gas phase and their adsorption onto a Au(111) surface

We made theoretical calculations for a benzonitrile molecule and its clusters in the gas phase and as adsorbed on the Au(111) surface, to explain the observation by scanning tunneling microscope, that is, the trimer formation of cyanophenyl porphyrins adsorbed onto the Au(111) surface. With regard to the gas-phase species, ab initio calculations showed that (1) the benzonitrile dimer has a single stable structure that is planar and antiparallel; (2) the trimer has two isoenergetic stable structures, that is, a planar and cyclic structure and an antiparallel and nonplanar one; (3) the clusters are more stable, at low temperatures, than the monomer. For the adsorbed species, we made quantum mechanical/molecular mechanical calculations in which the interaction between the adsorbates and the surface is evaluated in a molecular-mechanical way by using analytical potential functions and an image charge model. Because the stable structures were found to be similar to those in the gas phase, the cluster formation of adsorbed cyanophenyl porphyrins was attributed to the interaction between cyanophenyl groups, which is barely affected by adsorbate-surface interaction. It was also found that the adsorbed cyclic benzonitrile trimer is more stable than the monomer and the dimer because the relative stability is dependent on enthalpy alone. We therefore concluded that the preferential formation of trimers by the adsorbed cyanophenyl porphyrins is due to the negligible contribution of entropy to the relative stability of the adsorbed species and that the adsorption hardly changes the situation found in the gas phase.     

Au adatoms in self-assembly of benzenethiol on the Au(111) surface

Self-assembly of benzenethiol at low coverage on Au(111) was studied using low-temperature scanning tunneling microscopy. Phenylthiolate species (PhS), formed by thermal dehydrogenation of the parent PhSH molecule, was found to self-assemble into surface-bonded complexes with gold adatoms. Each complex involves two PhS species and one gold adatom. The PhS species form either cis- or trans-geometry relative to each other. At a higher coverage, the complexes coalesce, most likely due to the formation of weak C-H...S hydrogen bonds facilitated by the spatial arrangement of the PhS groups. Our findings thus establish that the self-assembly of arenethiols on the Au(111) surface is driven by gold adatom chemistry, which has recently been found to be the key ingredient in the self-assembly of alkanethiols on gold.     

Methylthiolate on Au(111): adsorption and desorption kinetics

Low energy electron diffraction, Auger electron spectroscopy, X-ray photoelectron spectroscopy and line of sight mass spectrometry have been used to study the adsorption and desorption of dimethyldisulfide (DMDS) on Au(111). At 300 K adsorption is dissociative, forming a chemisorbed adlayer of methylthiolate with a 1/3 ML, (sq rt 3 x sq rt 3)R30 degrees, structure. At 100 K adsorption is molecular, with dissociation to form the 1/3 ML (sq rt 3 x sq rt 3)R30 degrees methylthiolate structure occurring at 138-160 K. A physisorbed DMDS layer, with a coverage of 1/6 ML of DMDS, forms on top of the (sq rt 3 x sq rt 3)R30 degrees chemisorbed MT surface for T < or = 180 K, with multilayers forming for T < or = 150 K. In temperature programmed desorption, multilayers of DMDS desorbed with zero order kinetics and an activation energy of 41 kJ mol(-1); the physisorbed layer desorbed with first order kinetics, exhibiting repulsive lateral interactions with an activation energy which varied from 63 kJ mol(-1) (theta = 0) to 51 kJ mol(-1) (theta = 1); the chemisorbed methylthiolate layer desorbed associatively as DMDS via the physisorbed layer, the activation energy for the reaction, 2 methylthiolate --> physisorbed DMDS, exhibiting repulsive lateral interactions with an activation energy which varied from 65 kJ mol(-1) (theta = 0) to 61 kJ mol(-1) (theta = 1). The physisorbed disulfide layer explains the pre-cursor state adsorption kinetics observed in sticking probability measurement, while its relatively facile formation provides a mechanism by which thiolate self-assembled monolayers can become mobile at room temperature.     

Effect of anion adsorption on early stages of copper electrocrystallization at Au(111) surface

The monolayer and submonolayer deposition of copper on Au(111) electrode surface in the presence of chloride and sulfate ions was studied by in situ X-ray absorption and electrochemical techniques. The anions coadsorb with the deposited copper adatoms and have a strong influence on the structure of these mixed overlayers. Copper deposited in the presence of chloride forms a bilayer in which copper atoms are sandwiched between the gold substrate and the top layer of chloride ions. The bilayer is well ordered and has a (5×5) long range structure. The copper atoms are packed in registry with the top layer of chloride ions. In contrast, copper adatoms deposited in the presence of sulfate ions are packed in registry with respect to the Au(111) substrate. The coadsorbed copper and sulfate form a highly corrugated overlayer. The copper adatoms assume a honeycomb (√3×√3) structure with the center of the honeycomb occupied by sulfate. The sulfate ion adsorbs with three of its four oxygens directed towards the hexagon of copper adatoms. The bond angle between the copper adatom and the oxygen of the sulfate ion is approximately equal to 45 °. Our data indicate that, in contrary to the literature reports, the (√3×√3) structure observed on STM and AFM images corresponds to the corrugation of adsorbed sulfate ions rather than copper adatoms.     

Ethanol adsorption on the Si (111) surface: first principles study

Equilibrium atomic configurations and electron energy structure of ethanol adsorbed on the Si (111) surface are studied by the first principles density functional theory. Geometry optimization is performed by the total energy minimization method. Equilibrium atomic geometries of ethanol, both undissociated and dissociated, on the Si (111) surface are found and analysed. Reaction pathways and predicted transition states are discussed in comparison with available experimental data in terms of the feasibility of the reactions occurring. Analysis of atom and orbital resolved projected density of states indicates substantial modifications of the Si surface valence and conduction electron bands due to the adsorption of ethanol affecting the electronic properties of the surface.     

Quantum-Chemical Study of the Adsorption of Pb2+ on Au(111)

The interaction between the Pb²⁺ ion and gold is studied using the cluster metal surface model and the density functional method. The geometric and energy characteristics of the interaction between this ion and the gold surface are estimated. The form in which the Pb²⁺ ion exists on the surface is more ad-ionic than ad-atomic. The electron structure of the Au–Pb_ads²⁺ system is analyzed. The participation of the adsorbed lead ion and its neighboring gold atoms in the formation of molecular orbitals in this system is estimated. It is established that the contribution to their formation is predominantly provided by the lead s-orbitals and the gold d-orbitals. The interaction with a solvent decreases the transfer of a charge from an adsorbed lead ion to gold. It is demonstrated that the hydrolyzability of a lead ion decreases upon its transition from the electrolyte phase to the surface.

     

甲氧基在Rh(111)表面吸附的密度泛函研究

采用密度泛函理论(DFT)的B3LYP方法,以原子簇Rh13(9,4)为模拟表面,在6-31G(d,p)与Lanl2dz基组水平上,对甲氧基在Rh(111)表面的四种吸附位置(fcc、hcp、top、bridge)的吸附模型进行了几何优化、能量计算、Mulliken电荷布局分析以及前线轨道的计算。结果表明,当甲氧基通过氧与金属表面相互作用时,在bridge位的吸附能最大,吸附体系最稳定,在top位转移的电子数最多;吸附于Rh(111)面的过程中C—O键被活化,C—O键的振动频率发生红移。     

TNT adsorption on Au(111): electrochemistry and adlayer structure

Electrochemistry and adlayer structure of trinitrotoluene (TNT) on an Au(111) electrode were investigated using cyclic voltammetry and in situ electrochemical scanning tunneling microscopy (ECSTM).     

On the dynamics of H2 adsorption on the Pt(111) surface

The dynamics and kinetics of the dissociation of hydrogen over the hexagonal close packed platinum (Pt(111)) surface are investigated using Car–Parrinello molecular dynamics and static density functional theory calculations of the potential energy surfaces. The calculations model the reference energy‐resolved molecular beam experiments, considering the degrees of freedom of the catalytic surface. Two‐dimensional potential energy surfaces above the main sites on Pt(111) are determined. Combined with Car–Parrinello trajectories, they confirm the dissociative adsorption of H₂ as the only adsorption pathway on this surface at H₂ incindence energies above 5 kJ/mol. A direct determination of energy‐resolved sticking coefficients from molecular dynamics is also performed, showing an excellent agreement with the experimental data at incidence energies in the 5–30 kJ/mol range. Application of dispersion corrections does not lead to an improvement in the prediction of the H₂ sticking coefficient. The adsorption reaction rate obtained from the calculated sticking coefficients is consistent with experimentally derived literature values.