Regulation of π-stacked anthracene arrangement for fluorescence modulation of organic solid from monomer to excited oligomer emission

The construction and precise control of the face-to-face π-stacked arrangements of anthracene fluorophores in the crystalline state led to a remarkable red shift in the fluorescence spectrum due to unprecedented excited oligomer formation. The arrangements were regulated by using organic salts including anthracene-1,5-disulfonic acid (1,5-ADS) and a variety of aliphatic amines. Because of the smaller number of hydrogen atoms at the edge positions and the steric effect of the sulfonate groups, 1,5-ADS should prefer face-to-face π-stacked arrangements over the usual edge-to-face herringbone arrangement. Indeed, as the alkyl substituents were lengthened, the organic salts altered their anthracene arrangement to give two-dimensional (2D) edge-to-face and end-to-face herringbone arrangements, one-dimensional (1D) face-to-face zigzag and slipped stacking arrangements, a lateral 1D face-to-face arrangement like part of a brick wall, and a discrete monomer arrangement. The monomer arrangement behaved as a dilute solution even in the close-packed solid state to emit deep blue light. The 1D face-to-face zigzag and slipped stacking of the anthracene fluorophores caused a red shift of 30-40?nm in the fluorescence emission with respect to the discrete arrangement, probably owing to ground-state associations. On the other hand, the 2D end-to-face stacking induced a larger red shift of 60?nm, which is attributed to the excimer fluorescence. Surprisingly, the brick-like lateral face-to-face arrangement afforded a remarkable red shift of 150?nm to give yellow fluorescence. This anomalous red shift is probably due to excited oligomer formation in such a lateral 1D arrangement according to the long fluorescence lifetime and little shift in the excitation spectrum. The regulation of the π-stacked arrangement of anthracene fluorophores enabled the wide modulation of the fluorescence and a detailed investigation of the relationships between the photophysical properties and the arrangements.     

Delocalization of positive charge in π-stacked multi-benzene rings in multilayered cyclophanes

In the present study, delocalization of a positive charge in π-stacked multi-benzene rings in multilayered para- and meta-cyclophanes, in which benzene rings are connected by propyl chains to form a chromophore array with the face-to-face structure, was investigated by means of transient absorption spectroscopy during the pulse radiolysis using dichloroethane as a solvent. The local excitation and charge resonance (CR) bands were successfully observed. It was revealed that the CR band shifted to the longer wavelength side with the number of the benzene rings. The stabilization energy estimated from the peak position of the CR band showed the efficient charge delocalization over the cyclophanes. Furthermore, the CR bands showed the slight spectral change attributable to the change in distribution of the conformers. The substantially long lifetime of the CR band can be explained on the basis of the smaller charge distribution on the outer layers of the multilayered cyclophanes.     

Resorcinol-templated synthesis of a cofacial terpyridine in crystalline π-stacked columns

A resorcinol achieves a templated stereospecific and near-quantitative synthesis of a cofacial terpyridine in the solid state. The solid-state synthesis occurs in one-dimensional π-stacked columns with reactivities highly sensitive to peripheral groups attached to the template.     

The steric effect of aromatic pendant groups and electrical bistability in π-stacked polymers for memory devices

In order to investigate the steric effect of aromatic pendant groups and the electrical bistability in nonconjugated polymers potentially for memory device applications, two π-stacked polymers with different steric structures are synthesized and characterized. They exhibit two conductivity states and can be switched from an initial low-conductivity (OFF) state to a high-conductivity (ON) state. Additionally, they demonstrate nonvolatile write-once-read-many-times (WORM) memory behavior with an ON/OFF current ratio up to 10(4), and flash memory behavior with an ON/OFF current ratio of approximately 10(5). Both steady-state and time-resolved fluorescence spectroscopies are used to examine the conformational change of the polymers responding to an applied external electrical voltage. The results provide useful information on different steric effects of pendant groups in polymer chains, resulting in various electrical behaviors. The possibility in realizing an "erasable" behavior through breaking π-stacked structures of pendant groups by a reversal of the electric field was also discussed on the basis of temperature-dependent fluorescence spectroscopy investigation. These results may thus offer a guideline for the design of practical polymer memory devices via tuning steric structure of π-stacked polymers.     

Direct detection of Δ9-tetrahydrocannabinol in saliva using a novel homogeneous competitive immunoassay with fluorescence quenching

For the detection of the major active component of cannabis, Δ9-tetrahydrocannabinol (THC) in aqueous samples, a homogeneous competitive immunoassay based on fluorescence quenching induced by fluorescence resonance energy transfer (FRET) has been developed. The fluorescence of anti-THC-antibody, labeled with fluorescence dye DY-481XL, can be quenched after its binding to THC-BSA-quencher conjugate (bovine serum albumin coupled with THC and another fluorescence dye, DYQ-661, as quencher). This quenching effect is inhibited when the antibodies bind to free THC in aqueous sample, thus competing for binding sites with the THC-BSA-quencher conjugate. The extent of the inhibition corresponds to the concentration of THC in the samples. The assay principle is simple and the test duration is within 10 min. The detection limit for THC in buffer was 2 ng mL⁻¹. In pooled saliva samples a detection limit of 50 ng mL⁻¹ was achieved.     

Novel peptide–protein assay for identification of antimicrobial peptides by fluorescence quenching

The specific interaction of peptides with proteins is often a key factor which determines biological activities. The determination of K(d) values of such interactions is commonly performed with fluorescence polarization. However, fluorescence polarization assays are prone to false-positive results due to the potential for non-specific interactions and only afford very low signal-to-background ratios. Here, we present as an alternative a fluorescence resonance energy transfer based quenching assay to measure peptide-protein interactions in solution. In a test setup where antimicrobial peptides were tested for their affinity towards the protein DnaK, the assay provided high specificity and good reproducibility and correlated with the results obtained by fluorescence polarization methods. Furthermore, we established a fast prescreening method which will allow a highly efficient screening of peptide libraries by reducing the amount of sample by 98% compared to conventional fluorescence polarization assays.     

Conduction modulation of π-stacked ethylbenzene wires on Si(100) with substituent groups

For the realization of molecular electronics, one essential goal is the ability to systematically fabricate molecular functional components in a well-controlled manner. Experimental techniques have been developed such that π-stacked ethylbenzene molecules can now be routinely induced to self-assemble on an H-terminated Si(100) surface at precise locations and along precise directions. Electron transport calculations predict that such molecular wires could indeed carry an electrical current, but the Si substrate may play a considerable role as a competing pathway for conducting electrons. In this work, we investigate the effect of placing substituent groups of varying electron donating or withdrawing strengths on the ethylbenzene molecules to determine how they would affect the transport properties of such molecular wires. The systems consist of a line of π-stacked ethylbenzene molecules covalently bonded to a Si substrate. The ethylbenzene line is bridging two Al electrodes to model current through the molecular stack. For our transport calculations, we employ a first-principles technique where density functional theory (DFT) is used within the non-equilibrium Green’s function formalism (NEGF). The calculated density of states suggest that substituent groups are an effective way to shift molecular states relative to the electronic states associated with the Si substrate. The electron transmission spectra obtained from the NEGF–DFT calculations reveal that the transport properties could also be extensively modulated by changing substituent groups. For certain molecules, it is possible to have a transmission peak at the Fermi level of the electrodes, corresponding to high conduction through the molecular wire with essentially no leakage into the Si substrate.     

Ge(001) as a template for long-range assembly of π-stacked coronene rows

The adsorption of coronene molecules (C(24)H(12)) on the Ge(001) surface has been studied by means of scanning tunnelling microscopy (STM). Upon room temperature deposition, the coronene molecules adsorb in an upright geometry forming compact layers patterned in rows for coverages of one monolayer and less, being the only example investigated so far in which a pure aromatic hydrocarbon forms a well-ordered monolayer on a non-passivated semiconductor surface. At half monolayer, the molecular rows consist of long chains of π-stacked molecules and the distance between molecular planes is 8 ?. This configuration is maintained upon cooling the system below the transition temperature of Ge(001) (~220 K), but the molecular layer experiences also a transition from rows perpendicular to rows parallel to the Ge dimer rows. We interpret our observations in terms of a weak bonging between molecules and substrate, which facilitates the formation of large ordered domains of molecules, revealing Ge(001) as an ideal template for the growth of this and other aromatic hydrocarbons.     

Polymer matrix dependence of conformational dynamics within a π-stacked perylenediimide dimer and trimer revealed by single molecule fluorescence spectroscopy

The conformation of embedded molecule in a polymer matrix is sensitive to the local nano-environment that the molecule experiences. Particularly, single molecule spectroscopic methods have been utilized to visualize each molecular conformation in local sites of the polymer matrix by monitoring rotational diffusion and fluctuating fluorescence of the molecule. Here, we have performed single molecule spectroscopic experiments on a π-stacked perylenediimide (PDI) dimer and trimer, in which enhanced π-π interaction in π-stacked PDIs makes the fluorescence lifetime longer, embedded in two different polymers, namely poly(methyl methacrylate) (PMMA) and poly(butyl methacrylate) (PBMA), to reveal the conformational change depending on the polymer matrix. The fluorescence lifetimes of π-stacked PDIs are influenced by polymer surroundings because their molecular conformations are dependent on their interactions with the local environment in the polymer matrix. Furthermore, from an in-depth analysis of autocorrelation functions of fluorescence intensity trajectories, we could assign that the first autocorrelation value (lag 1) is larger as the intensity trace becomes more fluctuating. Thus, we expect that π-stacked PDIs, a model system for the formation of PDI excimer-like states, can be utilized to probe the surrounding nano-environment by monitoring the conformational change in real time.     

Single-molecule conductance through multiple π-π-stacked benzene rings determined with direct electrode-to-benzene ring connections

Understanding electron transport across π-π-stacked systems will help to answer fundamental questions about biochemical redox processes and benefit the design of new materials and molecular devices. Herein we employed the STM break-junction technique to measure the single-molecule conductance of multiple π-π-stacked aromatic rings. We studied electron transport through up to four stacked benzene rings held together in an eclipsed fashion via a paracyclophane scaffold. We found that the strained hydrocarbons studied herein couple directly to gold electrodes during the measurements; hence, we did not require any heteroatom binding groups as electrical contacts. Density functional theory-based calculations suggest that the gold atoms of the electrodes bind to two neighboring carbon atoms of the outermost cyclophane benzene rings in η(2) fashion. Our measurements show an exponential decay of the conductance with an increasing number of stacked benzene rings, indicating a nonresonant tunneling mechanism. Furthermore, STM tip-substrate displacement data provide additional evidence that the electrodes bind to the outermost benzene rings of the π-π-stacked molecular wires.     

Fluorogenic probes for aldol reactions: tuning of fluorescence using π-conjugation systems

Fluorogenic aldehydes or probes for monitoring of the progress of aldol reactions have been developed. Fluorescence of benzaldehydes conjugated with aryl groups via a double or triple bond and of their aldol products was evaluated in aqueous solutions. Based on the fluorescence, fluorogenic aldol reaction substrates and retro-aldol reaction substrates were identified. Use of the probe system with optimal fluorescence properties for aldol reactions was demonstrated in assays with purified protein catalysts and with overproduced crude protein catalysts in cell lysates.     

Vibrational-state dependence of the cross sections for fluorescence quenching of I2[BOu+(3Π)] by foreign gases

The cross sections for quenching of the I₂[BO_u⁺ (³Π)−XO_g⁺ (¹Σ)] fluorescence by foreign gases were studied by rovibrational state-selected dye-laser excitation. The vibrational-state dependence of the cross section was structureless and was nearly independent of the quenchers used. No influence of the dipole moment of the quencher was observed. The repulsive state mainly causing this process, i.e., collision-induced predissociation, is estimated to be the O_u⁻ (³Π) state. A model calculation of the cross sections indicates that the potential energy curve of this repulsive state is located very close to the inner wall of the BO_u⁺ (³Π) potential.     

Methoxyl-induced fluorescence quenching in N,N′-bridged 9H-dipyrrinones and an X-ray crystal structure

Strongly fluorescent dipyrrinones can be prepared by bridging the pyrrole and lactam nitrogens with a carbonyl group, from reaction with N,N′-carbonyldiimidazole in the presence of a strong, non-nucleophilic base. The yellow, N,N′-carbonyl-bridged dipyrrinones typically have fluorescent quantum yields (φ_F) approaching 1.0. Thus, in chloroform, N,N′-bridged 9H-dipyrrinones with β-alkyl substituents: 2,3-diethyl-7,8-dimethyl has φ_F = 0.90 (λ_em = 465 nm) and 2,3-dimethyl-7,8-dimethoxy has φ_F = 0.84 (λ_em = 482 nm). In contrast, 2,3-dimethoxy-7,8-dimethyl and 2,3,7,8-tetramethoxy show red-shifted λ_em but with strongly reduced φ_F: φ_F = 0.10 (λ_em = 511 nm) and 0.08 (λ_em = 511 nm), respectively. Methoxy substituents on the lactam, but not the pyrrole ring act to quench the fluorescence and shift the emission and excitation wavelengths bathochromically. The first X-ray crystal structure of an N,N′-carbonyl-bridged dipyrrinone was obtained from 7,8-dimethoxy-2,3-dimethyl-10H-dipyrrin-1-one. Correspondence: David A. Lightner, Department of Chemistry, University of Nevada, Reno, Nevada 89557-0020, USA.     

Atomic pseudopotentials for reproducing π-orbital electron behavior in sp2 carbon atoms

A pseudopotential system for an sp² carbon atom is built and tested as a building block for various pseudohydrocarbon polyenes and polycyclic aromatic hydrocarbons. This pseudosystem has a central charge of Z = 1; it contains only one electron. It is employed in ab-initio calculations in which several physical characteristics including the orbital energies and first ionization energy, as well as first excitation energy and UV spectra, are found to be well-reproduced by the pseudosystem. Remarkably, not only are the π excitation energies in good agreement with the reference calculations, but also transition densities and intensities, confirming that the virtual space obtained with the pseudopotentials is of excellent quality. Finally, this approach is capable of reproducing the π electron systems of small or large, planar or nonplanar hydrocarbons at low computational cost.     

Construction of 1D π-stacked superstructures with inclusion channels through symmetry-decreasing crystallization of discotic molecules of C3 symmetry

Supramolecular architectures that possess both 1D π-stacked columns and inclusion channels were constructed by symmetry-decreasing crystallization of dehydrobenzo[12]annulene (DBA) derivatives with naphthyl arms and C(3) symmetry. The crystallization can be interpreted as i)?formation of a two-fold column, ii)?layer formation, and iii)?lamination of the layer accompanied by guest inclusion.     

A switch-on fluorescence assay for bacterial β-lactamases with amyloid fibrils as fluorescence enhancer and visual tool

Herein is described the development of a novel switch-on fluorescence assay for detecting β-lactamases. The fluorescence assay comprises two components: solid beads coated with a β-lactam antibiotic, which is linked to an environment-sensitive fluorophore (dansylaminothiophenol, DTA), and amyloid fibrils of hen lysozyme (acting as fluorescence enhancer and visual tool). In the presence of the clinically significant TEM-1 β-lactamase, the DTA-antibiotic complex on the solid beads is hydrolyzed, thus releasing the DTA dye into solution. The DTA dye is only weakly fluorescent in solution but gives strong green fluorescence upon binding to lysozyme fibrils. These strongly fluorescent DTA-bound fibrils can be easily visualized by the naked eye upon illumination of the sample with a simple UV lamp. The fluorescence assay can detect TEM-1 at low concentration (0.01 nM). In contrast, no observable fluorescence appears when the fluorescence assay is performed on samples without the TEM-1 β-lactamase.     

First electronic transitions in compounds with the perimeter π-system

In the Pariser-Parr-Pople approximation, an analysis has been made of the first -electron transitions in neutral and charged [N]annulenes with a closed shell. The influence of the ratio of numbers of -electrons and atoms in the annulene on the spectrum of the annulene has been examined critically. A similarity of the spectra of [N]annulenes and polymethine dyes has been noted.Deceased.Institute of Organic Chemistry, Academy of Sciences of the Ukrainian SSR, Kiev. Translated from Teoreticheskaya i Éksperimental'naya Khimiya, Vol. 27, No. 4, pp. 493–499, July–August, 1991. Original article submitted February 8, 1988.