Structure of DNA-cationic surfactant complexes at hydrophobically modified and hydrophilic silica surfaces as revealed by neutron reflectometry

In this article, we discuss the structure and composition of mixed DNA-cationic surfactant adsorption layers on both hydrophobic and hydrophilic solid surfaces. We have focused on the effects of the bulk concentrations, the surfactant chain length, and the type of solid surface on the interfacial layer structure (the location, coverage, and conformation of the DNA and surfactant molecules). Neutron reflectometry is the technique of choice for revealing the surface layer structure by means of selective deuteration. We start by studying the interfacial complexation of DNA with dodecyltrimethylammonium bromide (DTAB) and hexadecyltrimethylammonium bromide (CTAB) on hydrophobic surfaces, where we show that DNA molecules are located on top of a self-assembled surfactant monolayer, with the thickness of the DNA layer and the surfactant-DNA ratio determined by the surface coverage of the underlying cationic layer. The surface coverages of surfactant and DNA are determined by the bulk concentration of the surfactant relative to its critical micelle concentration (cmc). The structure of the interfacial layer is not affected by the choice of cationic surfactant studied. However, to obtain similar interfacial structures, a higher concentration in relation to its cmc is required for the more soluble DTAB surfactant with a shorter alkyl chain than for CTAB. Our results suggest that the DNA molecules will spontaneously form a relatively dense, thin layer on top of a surfactant monolayer (hydrophobic surface) or a layer of admicelles (hydrophilic surface) as long as the surface concentration of surfactant is great enough to ensure a high interfacial charge density. These findings have implications for bioanalytical and nanotechnology applications, which require the deposition of DNA layers with well-controlled structure and composition.     

Computational studies on the behavior of sodium dodecyl sulfate (SDS) at TiO2(rutile)/water interfaces

Molecular dynamics simulations to study the behavior of an anionic surfactant close to TiO(2) surfaces were carried out where each surface was modeled using three different crystallographic orientations of TiO(2) (rutile), (001), (100) and (110). Even though all three surfaces were made with the same atoms the orientation was a key to determine adsorption since surfactant molecules aggregated in different ways. For instance, simulations on the surface (100) showed that the surfactant molecules formed a hemicylinder structure whereas the molecules on the surface (110) were attached to the solid by forming a hemisphere-like structure. Structure of the aggregated molecules and surfactant adsorption on the surfaces were studied in terms of tails and headgroups density profiles as well as surface coverage. From density profiles and angular distributions of the hydrocarbon chains it was possible to determine the influence of the solid surface. For instance, on surfaces (100) and (001) the surfactant molecules formed molecular layers parallel to the surface. Finally, it was found that in the solids (100) and (110) where there are oxygen atoms exposed on the surface the surfactant molecules were attached to the surfaces along the sites between the lines of these oxygen atoms.     

Monte Carlo study of surfactant adsorption on heterogeneous solid surfaces

The equilibrium between free surfactant molecules in aqueous solution and adsorbed layers on structured solid surfaces is investigated by lattice Monte Carlo simulation. The solid surfaces are composed of hydrophilic and hydrophobic surface regions. The structures of the surfactant adsorbate above isolated surface domains and domains arranged in a checkerboard-like pattern are characterized. At the domain boundary, the adsorption layers display a different behavior for hydrophilic and hydrophobic surface domains. For the checkerboard-like surfaces, additional adsorption takes place at the boundaries between surface domains.     

Structural characterization of organic multilayers on silicon(111) formed by immobilization of molecular films on functionalized Si-C linked monolayers

Silicon(111)-H surfaces were derivatized with omega-functionalized alkenes in UV-mediated and thermal hydrosilylation reactions to give Si-C linked monolayers. Additional molecular layers of organic compounds were coupled either directly or via linker molecules to the functionalized alkyl monolayers. In the first instance, amino-terminated monolayers were prepared from a tert-butoxycarbonyl-protected omega-aminoalkene followed by removal of the protecting group. Various thiols were coupled to the monolayer using a heterobifunctional linker, which introduced maleimide groups onto the surface. In the second system, N-hydroxysuccinimide (NHS) ester-terminated monolayers were formed by reaction of Si-H with N-succinimidyl undecenoate. The reactivity of the NHS ester groups was confirmed by further modification of the monolayer. The stepwise assembly of these multilayer structures was characterized by X-ray reflectometry and X-ray photoelectron spectroscopy.     

Voltammetry of azobenzene microcrystals

Azobenzene solid particles have been mechanically attached to a graphite electrode and measured by cyclic staircase voltammetry. Well-developed and widely separated cathodic and anodic peaks were observed. Redox reaction is controlled by both the heterogeneous charge transfer kinetics and the mass transfer. Its mechanism is explained by the surface diffusion model. Reaction starts at the three-phase boundary, where electrons are transferred from the electrode surface to the attached azobenzene molecules. The electrons are then propagated over the surface of microcrystals by a series of exchange reactions between hydrazobenzene and azobenzene molecules, with the participation of proton donors from the solution. The apparent mass transfer occurs in this way. In the crystal lattice the transmission of protons is not possible, and consequently there is no propagation of electrons. Received: 31 January 1997 / Accepted: 21 February 1997     

有机分子修饰硅表面*

硅作为一种重要的半导体材料,在微电子领域发挥着极其重要的作用。有机分子修饰硅表面是近年来硅表面化学领域的一个研究热点,引起了研究者的广泛重视。以共价键嫁接在硅表面的有机单分子层能形成稳定、高质量的杂化连接,将赋予传统的硅材料更多新的功能,具有许多其它表面难以比拟的优点。本文针对有机分子修饰硅表面的方法、单层膜的表征和应用,对近年来的最新研究进展进行了综述,并对该方向的今后的发展进行了展望。     

Neutral and charged polymer brushes at solid surfaces

Neutral and charged polymer brushes covalently attached to planar solid surfaces were generated by using self-assembled monolayers of an azo initiator and radical chain polymerization in situ. The brushes were characterized by FTIR-spectroscopy, optical waveguide-spectroscopy and Ellipsometry. Especially the film thicknesses of surface bound polyelectrolyte (PEL) monolayers were measured by optical waveguide spectroscopy (OWS) as a function of the humidity of the environment. The PEL brushes show strong increases in thickness as well as strong decrease of the refractive index of the surface attached layer due to water incorporation caused by the exposure to the humid environment. Additionally the behavior of neutral as well as charged brushes in contact with solvent was investigated by using multiple-angular-scans of ellipsometry in a total internal reflectance setup. The scaling behavior of the brush height as a function of the graft density of the attached polymer molecules was investigated for the neutral brush as well as for the PEL brush system.     

Polyelectrolyte Multilayers on Weak Polyelectrolyte Brushes

The interaction of surface‐attached weak polyelectrolyte brushes, grown directly from the surface of a solid substrate by surface‐initiated polymerization, with weak polyelectrolyte molecules in solution is studied. In addition, the formation of PEL multilayers onto such brush substrates is investigated. A strong template effect is observed and the thickness of each adsorbed layer is closely related to the thickness of the initial brush. Thus monolayers of more than 100 nm can be adsorbed in one single dipping cycle.

Layer thickness of PEI layers adsorbed to PMAA brushes as a function of the thickness of the surface‐attached monolayer. The solid line represents a case in which the PEI layer has exactly the same thickness as the brush monolayer.     

Interfacial layers from the protein HFBII hydrophobin: dynamic surface tension, dilatational elasticity and relaxation times

The pendant-drop method (with drop-shape analysis) and Langmuir trough are applied to investigate the characteristic relaxation times and elasticity of interfacial layers from the protein HFBII hydrophobin. Such layers undergo a transition from fluid to elastic solid films. The transition is detected as an increase in the error of the fit of the pendant-drop profile by means of the Laplace equation of capillarity. The relaxation of surface tension after interfacial expansion follows an exponential-decay law, which indicates adsorption kinetics under barrier control. The experimental data for the relaxation time suggest that the adsorption rate is determined by the balance of two opposing factors: (i) the barrier to detachment of protein molecules from bulk aggregates and (ii) the attraction of the detached molecules by the adsorption layer due to the hydrophobic surface force. The hydrophobic attraction can explain why a greater surface coverage leads to a faster adsorption. The relaxation of surface tension after interfacial compression follows a different, square-root law. Such behavior can be attributed to surface diffusion of adsorbed protein molecules that are condensing at the periphery of interfacial protein aggregates. The surface dilatational elasticity, E, is determined in experiments on quick expansion or compression of the interfacial protein layers. At lower surface pressures (<11 mN/m) the experiments on expansion, compression and oscillations give close values of E that are increasing with the rise of surface pressure. At higher surface pressures, E exhibits the opposite tendency and the data are scattered. The latter behavior can be explained with a two-dimensional condensation of adsorbed protein molecules at the higher surface pressures. The results could be important for the understanding and control of dynamic processes in foams and emulsions stabilized by hydrophobins, as well as for the modification of solid surfaces by adsorption of such proteins.     

The adsorption-desorption process of bovine serum albumin on carbon nanotubes

The aim of this work is to study the adsorption-desorption process of bovine serum albumin (BSA) on carbon nanotubes (CNT) by reflectometry. The effect of the surface properties was analyzed by comparing the behavior of BSA on silica. The experiments were performed by reflectometry at different BSA concentrations, at pH 3.0, 4.8, and 7.0 and at two ionic strengths. Protein desorption was induced by either dilution with buffer or the addition of SDS. The initial adsorption rate is controlled by the attachment of BSA molecules to the surface, and strongly diminishes at pH 7. Adsorption isotherms reflect the high affinity of BSA for both sorbent surfaces and reach well-defined plateau values that depend on the pH, being the highest at pH 4.8 on CNT. Experiments performed at different ionic strengths (NaCl added) showed a less pronounced effect. Dilution does not induce desorption on either surface however, the addition of SDS removes protein only from the silica surface.     

Polymer/surfactant interactions at the air/water interface

The development of neutron reflectometry has transformed the study and understanding of polymer/surfactant mixtures at the air/water interface. A critical assessment of the results from this technique is made by comparing them with the information available from other techniques used to investigate adsorption at this interface. In the last few years, detailed information about the structure and composition of adsorbed layers has been obtained for a wide range of polymer/surfactant mixtures, including neutral polymers and synthetic and naturally occurring polyelectrolytes, with single surfactants or mixtures of surfactants. The use of neutron reflectometry together with surface tensiometry, has allowed the surface behaviour of these mixtures to be related directly to the bulk phase behaviour. We review the broad range of systems that have been studied, from neutral polymers with ionic surfactants to oppositely charged polyelectrolyte/ionic surfactant mixtures. A particular emphasis is placed upon the rich pattern of adsorption behaviour that is seen in oppositely charged polyelectrolyte/surfactant mixtures, much of which had not been reported previously. The strong surface interactions resulting from the electrostatic attractions in these systems have a very pronounced effect on both the surface tension behaviour and on adsorbed layers consisting of polymer/surfactant complexes, often giving rise to significant surface ordering.     

Desorption of bottle-brush polyelectrolytes from silica by addition of linear polyelectrolytes studied by QCM-D and reflectometry

The possibility of exchanging adsorbed layers of PEO(45)MEMA:METAC-X brush polyelectrolytes (with two different charge densities, 10 and 75 mol%, denoted by X), with poly(MAPTAC), a highly charged linear polyelectrolyte, was investigated by quartz crystal microbalance with dissipation and reflectometry. The studies were conducted on a silica substrate at pH 10, conditions under which only electrostatic interactions are effective in the adsorption process. Based on the results, it was concluded that PEO(45)MEMA:METAC-10 forms an inhomogeneous layer at the interface through which poly(MAPTAC) chains can easily diffuse to reach the surface. On the other hand, the PEO(45)MEMA:METAC-75 layer was not affected when exposed to a poly(MAPTAC) solution. We argue that the observed effect for PEO(45)MEMA:METAC-75 is due to the formation of a homogeneous protective brush layer, in combination with the small difference in surface affinity between the bottle-brush polyelectrolyte and poly(MAPTAC), together with the difficulty of displacing highly charged polyelectrolyte chains once they are adsorbed on the oppositely charged surface. We also use the combination of QCM-D and reflectometry data to calculate the water content and layer thickness of the adsorbed layers.     

Versatility of alkyne-modified poly(glycidyl methacrylate) layers for click reactions

Functional soft interfaces are of interest for a variety of technologies. We describe three methods for preparing substrates with alkyne groups, which show versatility for "click" chemistry reactions. Two of the methods have the same root: formation of thin, covalently attached, reactive interfacial layers of poly(glycidyl methacrylate) (PGMA) via spin coating onto silicon wafers followed by reactive modification with either propargylamine or 5-hexynoic acid. The amine or the carboxylic acid moieties react with the epoxy groups of PGMA, creating interfacial polymer layers decorated with alkyne groups. The third method consists of using copolymers comprising glycidyl methacrylate and propargyl methacrylate (pGP). The pGP copolymers are spin coated and covalently attached on silicon wafers. For each method, we investigate the factors that control film thickness and content of alkyne groups using ellipsometry, and study the nanophase structure of the films using neutron reflectometry. Azide-terminated polymers of methacrylic acid and 2-vinyl-4,4-dimethylazlactone synthesized via reversible addition-fragmentation chain transfer polymerization were attached to the alkyne-modified substrates using "click" chemistry, and grafting densities in the range of 0.007-0.95 chains nm(-2) were attained. The maximum density of alkyne groups attained by functionalization of PGMA with propargylamine or 5-hexynoic acid was approximately 2 alkynes nm(-3). The alkyne content obtained by the three decorating approaches was sufficiently high that it was not the limiting factor for the click reaction of azide-capped polymers.     

Ring-opening and ring-closing reactions of a shikimic acid-derived substrate leading to diverse small molecules

An epoxide derived from (-)-shikimic acid was attached to a solid support and used to synthesize over 5000 diverse small molecules. Key transformations include a Lewis acid-catalyzed epoxide opening with amines and an intramolecular Heck reaction with aryl iodides. Compounds derived from this pathway were printed onto small-molecule microarrays and screened for binding to proteins. Compounds that bound to Aurora A kinase were characterized using surface plasmon resonance.     

Amphiphilic treelike rods at interfaces: layered stems and circular aggregation

Amphiphilic dendron-rod molecules with three hydrophilic poly(ethylene oxide) (PEO) branches attached to a hydrophobic octa-p-phenylene rod stem were investigated for their ability to form two-dimensional micellar structures on a solid surface. A treelike shape of the molecules was reported to be a major factor in the formation of nonplanar micellar structures in solution and in the bulk state (cylindrical and spherical). We observed that in these treelike amphiphilic molecules the hydrophilic terminated dendron branches assemble themselves in surface monolayers with the formation of two-dimensional layered or circular micellar structures. We suggested the formation of the planar ribbon-like structures with interdigitated layering within the loosely packed monolayers and circular, ringlike structures (2D circular aggregates) in the precollapsed state.     

Interfacial behavior of tetrapyridylporphyrin monolayer arrays

The behavior of monolayer films of free base 5,10,15,20-tetrapyridylporphinato (TPyP) and 5,10,15,20-tetrapyridylporphinato zinc(II) (ZnTPyP) on pure water, 0.1 M CdCl2, and 0.1 M CuCl2 subphases was investigated by surface pressure-area isotherms, specular X-ray reflectometry, and polarized total reflection X-ray absorption spectroscopy (PTRXAS). Surface pressure-area isotherms showed significant differences in the area per molecule on pure water compared to that on salt subphases, with a marked increase in the area observed on the salt solutions. This behavior was noted for both forms of the porphyrin and both salts investigated. Modeling of specular X-ray reflectometry data indicated that thinner and more electron dense layers on salt subphases best fit the observed profiles. These data suggest that the porphyrin macrocycle is oriented parallel to the interface on salt subphases and takes on a tilted conformation on pure water. In the case of ZnTPyP, PTRXAS was used to determine the orientation of the porphyrin moiety relative to the surface and to probe the coordination of the central Zn ion. In agreement with the pressure-area isotherms and reflectometry, the PTRXAS data indicate a change in orientation on the salt subphases.     

Adsorption of trypsin on hydrophilic and hydrophobic surfaces

The adsorption of trypsin onto polystyrene and silica surfaces was investigated by reflectometry, spectroscopic methods, and atomic force microscopy (AFM). The affinity of trypsin for the hydrophobic polystyrene surface was higher than that for the hydrophilic silica surface, but steady-state adsorbed amounts were about the same at both surfaces. The conformational characteristics of trypsin immobilized on silica and polystyrene nanospheres were analyzed in situ by circular dichroism and fluorescence spectroscopy. Upon adsorption the trypsin molecules underwent structural changes at the secondary and tertiary level, although the nature of the structural alterations was different for silica and polystyrene surfaces. AFM imaging of trypsin adsorbed on silica showed clustering of enzyme molecules. Rinsing the silica surface resulted in 20% desorption of the originally adsorbed enzyme molecules. Adsorption of trypsin on the surface of polystyrene was almost irreversible with respect to dilution. After adsorption on silica the enzymatic activity of trypsin was 10 times lower, and adsorbed on polystyrene the activity was completely suppressed. The trypsin molecules that were desorbed from the sorbent surfaces by dilution with buffer regained full enzymatic activity.     

On the stability of the polymer brushes formed by adsorption of ionomer complexes on hydrophilic and hydrophobic surfaces

We have studied the effect of normal forces and shear forces on the stability and functionality of a polymer brush layer formed upon adsorption of polymeric micelles on hydrophilic and hydrophobic surfaces. The micelles consist of oppositely charged polyelectrolyte blocks (poly(acrylic acid) and poly(N-methyl 2-vinyl pyridinium iodide), and a neutral block (poly(vinyl alcohol)) or neutral grafts (poly(ethylene oxide)). The strength of the attachment of the micellar layers to various substrates was evaluated with Atomic Force Microscopy. Flow cell experiments allowed for the evaluation of long-term stability of coatings in lateral flow. Fixed angle optical reflectometry was used to quantify protein (BSA) adsorption on the micellar layers after their exposure to flow. The results show that adsorbed micellar layers are relatively weakly attached to hydrophobic surfaces and much stronger to hydrophilic surfaces, which has a significant impact on their stability. Adsorbed layers maintain their ability to suppress protein adsorption on hydrophilic surfaces but not on hydrophobic surfaces. Due to the relatively weak attachment to hydrophobic surfaces the structure of adsorbed layers may easily be disrupted by lateral forces, such that the complex coacervate-brush structure no longer exists.     

Stable immobilization of an oligonucleotide probe on a gold substrate using tripodal thiol derivatives

We proposed an interface molecule for immobilization of DNA probes on solid substrates of DNA chips. We have designed and synthesized tripodal thiol derivatives for stable immobilization of oligonucleotide probes on a gold surface. On the basis of the tetrahedral structure of tripod, the tripodal thiol derivatives were bonded upright to the gold substrate, which would control the orientation of oligonucleotide probes. When the gold substrate with oligonucleotide probes tethered using the thiol derivatives was exposed to deionized water at higher temperatures, the tripodal interface molecules were attached to the gold surface more stably than the single contact molecules. The DNA chip platform combined with the functional interface molecule is suitable for a reproducible, inexpensive, and high-throughput detection system for genetic analyses in clinical diagnostics.