SIFT studies of the reactions of H3O+, NO+ and O+2 with a series of volatile carboxylic acids and esters

We report the results of a selected ion flow tube (SIFT) study of the reactions of H₃O⁺, NO⁺ and O⁺₂ with some nine carboxylic acids and eight esters. We assume that all the exothermic proton transfer reactions of H₃O⁺ with all the acid and esters molecules occur at the collisional rate, i.e. the rate coefficients, k, are equal to k_c; then it is seen that k values for most of the NO⁺ and O⁺₂ reactions also are equal to or close to k_c. The major ionic products of the H₃O⁺ reactions with both the acids and esters are the protonated parent molecules, MH⁺, but minor channels are also evident, these being the result of H₂O elimination from the excited (MH⁺)1 in some of the acid reactions and an alcohol molecule elimination (CH₃OH or C₂H₅OH) in some of the ester reactions. The NO⁺ reactions with the acids and esters result in both ion-molecule association producing NO⁺M in parallel with hydroxide ion (OH⁻) transfer with some of the acids, and parallel methoxide ion (CH₃O⁻) and ethoxide ion (C₂H₅O⁻) transfer as appropriate with some of the esters. The O⁺₂ reactions proceed by dissociative charge transfer with the production of two or more ionic fragments of the parent molecules, the different isomeric forms of both the acid and the ester molecules resulting in different product ions.     

Syntheses and X-Ray Crystal Structures of Novel Oxonium Ion-12-Crown-4 Complexes Isolated From Liquid Clathrate Media

Abstract

The reactions of Mo(CO)₆ and W(CO)₆ with HCl_(g) in the presence of 12-crown-4 and H₂O have been investigated in toluene. For both reactions, two products were isolated, depending on the oxidation of the metal center. For molybdenum, the Mo^III species, [H₃O⁺ · 12-crown-4]₃[Mo₂Cl₉ ^3-], 1, was obtained from the liquid clathrate layer in the reaction mixture. Upon air oxidation of the reaction mixture, the Mo^v complex, [H₇O₃ ^? · H₄O₂ ⁺ · (12-crown-4)₂][MoOCl₄(H₂O)^?]₂, 2, rapidly formed. For tungsten, the W^II species, [(H₅O₂ ⁺)₂ · 12-crown-4][W(CO)₄Cl^? ₃]₂, 3, deposited from the liquid clathrate layer which upon oxidation formed the W^v complex, [H₃O⁺· 12-crown-4][WOCl₄(H₂O)^?], 4. These reactions were promoted by UV radiation and formed liquid clathrates almost immediately upon reaction. X-ray crystal structures were performed on each compound. Complexes 1 and 4 have H₃O⁺ oxonium ions involved in complex hydrogen bonded arrays with the 12-crown-4 acceptor molecules. The H₅O₂ ⁺ oxonium ions in 2 and 3 contain extremely short O…O separations, equivalent to the shortest O-H…O bonds known. Also isolated in complex 2 was the H₇O₃ ⁺ oxonium ion which contains an unusual linear O…O…O core.     

The reactions of some interstellar ions with benzene,cyclopropane and cyclohexane

The reactions of the cyclic molecules C₆H₆ (benzene), c-C₃H₆ (cyclopropane) and c-C₆H₁₂ (cyclohexane) with ArH⁺ (ArD⁺), H₃⁺, N₂H⁺, CH₅⁺, HCO⁺, OCSH⁺, C₂H₃⁺, CS₂H⁺ and H₃O⁺ have been studied at 300 K using a SIFT apparatus. All the reactions except those of C₂H₃⁺ proceed via proton transfer and all are fast except the H₃O⁺ and CS₂H⁺ reactions with c-C₆H₁₂ which are endothermic and which establish that the proton affinity of c-C₆H₁₂ is 160 ± 1 kcal mol⁻¹, which is considerably lower than the published value. In the c-C₃H₆ and the c-C₆H₁₂ reactions multiple products are observed and hence “breakdown curves” for the protonated molecules are constructed and the appearance energies of the various ion products are consistent with available thermochemical data. The reactions of C₂H₃⁺ with these cyclic molecules are atypical within this series of reactions in that they appear to proceed largely via hydride ion transfer. The implications of the results of this study to interstellar chemistry are alluded to.     

C-C and C-H bond activation in the fragmentation of the [M + Ni]+ adducts of aliphatic amino acids

The major metal-containing species formed upon fast atom bombardment of amino acid/Ni⁺² mixtures is the [M + Ni]⁺ adduct, involving reduction of the Ni⁺² to the +1 oxidation state. By contrast, electrospray ionization of amino acid/Ni⁺² mixtures produces predominantly [Ni(M ? H)M]⁺; this species, on collisional activation, produces predominantly [M + Ni]⁺ by elimination of [M - H], presumably a carboxylate radical. The unimolecular fragmentation reactions occurring on the metastable ion time scale for the [M + Ni]⁺ adducts of a variety of α-amino acids have been recorded. The adducts with phenylalanine, α-aminoisobutyric acid and α-aminobutyric acid fragment by elimination of H₂O, H₂O + CO and, to a minor extent, by elimination of CO₂. These reactions are similar to those observed for the [M + Cu]⁺ adducts of α-amino acids. A reaction distinctive for the [M + Ni]⁺ adducts involves formation of the immonium ion RCH=NH ₂ ⁺ . By contrast, the [M + Ni]⁺ adducts with leucine, isoleucine, and norleucine show extensive metastable ion fragmentation by elimination of H₂, CH₄, C₂H₄, C₃H₆, and C₄H₈, with the relative importance of the different fragmentation channels depending on the configuration of the C₄H₉ side chain. These results are interpreted in terms of C-C and C-H bond activation of the C₄H₉ side chain by the Ni⁺. The adducts with valine and norvaline fragment in a fashion similar to the adduct with phenylalanine, except that minor elimination of C₃H₆ is observed.     

Study on Apparent Kinetics of the Reaction between Sulfuric and Hydriodic Acids in the Iodine–Sulfur Process

The iodine–sulfur (IS) thermochemical process for hydrogen production is one of the most promising approaches in using high‐temperature process heat supplied by a nuclear reactor. This process includes three reactions that form a closed cycle: the Bunsen reaction, in which iodine, water, and sulfur dioxide react to form sulfuric acid and hydriodic acid (HI); HI decomposition; and sulfuric acid decomposition. However, the side reactions between H₂SO₄ and HI may disturb the operation of the IS closed cycle. For optimal process conditions, the reaction kinetics between H₂SO₄ and HI should be examined. In this work, a preliminary kinetic study was conducted. Using the initial reaction rate method, the kinetic parameters of the reaction between sulfuric acid and HI, such as the apparent reaction orders and rate constant were determined. For I^?, the apparent reaction order was approximately 1.77, whereas the orders for H⁺ and SO₄^2? were 7.78 and 1.29, respectively. The apparent rate constant at 85 ± 1°C was approximately 2.949 × 10^?11 min^?1 (mol/L)^?9.84. The H⁺ concentration had more significant influence on the reaction rate than those of SO₄^2? and I^?. Such basic data provide useful information for related process design and further kinetics study.     

Thermal Activation of CH4 and H2 as Mediated by the Ruthenium Oxide Cluster Ions [RuOx]+ (x=1–3): On the Influence of Oxidation States

Thermal gas-phase reactions of the ruthenium-oxide clusters [RuO_x]⁺ (x=1–3) with methane and dihydrogen have been explored by using FT-ICR mass spectrometry complemented by high-level quantum chemical calculations. For methane activation, as compared to the previously studied [RuO]⁺/CH₄ couple, the higher oxidized Ru systems give rise to completely different product distributions. [RuO₂]⁺ brings about the generations of [Ru,O,C,H₂]⁺/H₂O, [Ru,O,C]⁺/H₂/H₂O, and [Ru,O,H₂]⁺/CH₂O, whereas [RuO₃]⁺ exhibits a higher selectivity and efficiency in producing formaldehyde and syngas (CO+H₂). Regarding the reactions with H₂, as compared to CH₄, both [RuO]⁺ and [RuO₂]⁺ react similarly inefficiently with oxygen-atom transfer being the main reaction channel; in contrast, [RuO₃]⁺ is inert toward dihydrogen. Theoretical analysis reveals that the reduction of the metal center drives the overall oxidation of methane, whereas the back-bonding orbital interactions between the cluster ions and dihydrogen control the H−H bond activation. Furthermore, the reactivity patterns of [RuO_x]⁺ (x=1–3) with CH₄ and H₂ have been compared with the previously reported results of Group 8 analogues [OsO_x]⁺/CH₄/H₂ (x=1–3) and the [FeO]⁺/H₂ system. The electronic origins for their distinctly different reaction behaviors have been addressed.     

Negative Ion Fragmentation of Cysteic Acid Containing Peptides: Cysteic Acid as a Fixed Negative Charge

We present here a study of the collision induced dissociation (CID) of deprotonated cysteic acid containing peptides produced by MALDI. The effect of cysteic acid (C_ox) position is interrogated by considering the positional isomers, C_oxLVINVLSQG, LVINVLSQGC_ox, and LVINVC_oxLSQG. Although considerable variation between the CID spectra is observed, the mechanistic picture that emerges involves charge retention at the deprotonated cysteic acid side chain. Fragmentation occurs in the proximity of the cysteic acid group by charge directed mechanisms as well as remote from this group to form ions, which may be rationalized by charge remote mechanisms. Additionally, the formation of the SO₃^–• ion is observed in all cases. Fragmentation of C_oxLVINVLSQC_ox provides both N- and C-terminal, y and b ions, respectively indicating that the negative charge may be retained at either of the cysteic acids; however, there is some evidence that charge retention at the C-terminal cysteic acid may be preferred. Fragmentation of tryptic type peptides containing a C-terminal arginine or lysine residue is considered through comparison of three peptides C_oxLVINKLSQG, C_oxLVINVLSQK, and C_oxLVINVLSQR. Lastly, we rationalize the formation of b _n–1 + H₂O and a _n–1 ions through a mechanism involving rearrangement of the C-terminal residue to form a mixed anhydride intermediate.     

Syntheses, structure and intercalation properties of low-dimensional phenylarsonates, A(HO3AsC6H5)(H2O3AsC6H5) (A = Tl, Na, K and Rb)

Four new low-dimensional phenylarsonates, A(HO₃AsC₆H₅)(H₂O₃AsC₆H₅) (A = Tl(1), Na(2), K(3) and Rb(4)), have been synthesized and characterized by X-ray diffraction, spectroscopic and thermal studies. They crystallize in triclinic unit cells and have approximately planar arrangement of A⁺ ions, coordinated to oxygen atoms of phenylarsonates, on both sides. Structure of thallium phenylarsonate as determined by single crystal X-ray diffraction, is one-dimensional, whereas those of alkalimetal analogues are two-dimensional. Successful intercalation reactions of compounds1 and2 with primaryn-alkyl amines have been demonstrated. Dedicated to Prof J Gopalakrishnan on his 62nd birthday.     

A supramolecular organic framework with ant topology featuring interdigitation and interpenetration

H₄BOPTC reacts with IMI to yield a supramolecular organic framework, formulated as [IMIH⁺]₂√[H₂BOPTC^2 ? ]√0.5H₂O (1) (IMI = imidazole, H₄BOPTC = benzophenone-3,3′,4,4′-tetracarboxylic acid). Single-crystal X-ray diffraction analysis reveals that 1 shows a novel architecture with two-level hierarchical entanglement. H₂BOPTC^2 ?  connects to IMIH⁺ through hydrogen bonds, providing 1D ribbon. The basic ribbons are entangled into a 3D net with ant topology. Then the ant nets further interpenetrate to give the final entangled framework. The thermal stability, optical band gap energy and photoluminescent property of 1 have also been investigated.     

Kinetic modeling of the reactions of C3H3+ with acetylene,deuteroacetylene, and diacetylene

The reactions of ?-C₃H₃⁺ (propargylium cation) with acetylene and diacetylene have been modeled kinetically. Data were obtained from Fourier Transform Ion Cyclotron Resonance (FTICR) experiments on these systems, which are themselves models for soot particle initiation. Acetylene forms an encounter complex with ?-C₃H₃⁺, but, in the absence of a third body collision, the complex decomposes to acetylene and c-C₃H₃⁺ (cyclopropenylium cation) at about 1/3 the rate it decomposes to acetylene and ?-C₃H₃⁺, in spite of the fact that c-C₃H₃⁺ is ca. 115 kJ/mol more stable than ?-C₃H₃⁺. The encounter complex is long enough lived, and energetic enough, to scramble deuterium in reactions between ?-C₃H₃⁺ and C₂D₂. These reactions have been successfully modeled, yielding a nearly statistical distribution of deuterium, and a rather large kinetic isotope effect. The more complex reactions of ?-C₃H₃⁺ with diacetylene have also been modeled.     

Structural and Anion Coordination Features of Macrocyclic Polyammonium Cations in the Solid,Solution and Computational Phases

Abstract

The crystal structures of two hexaaza macrocycles 1,4,7,12,15,18-hexaazacyclodocosane ([22]N₆:1-6H⁺, 6C1^?) and 1,13-dioxa-4,7,10,16,19,22-hexaazacyclotetraeicosane ([24]N₆O₂:2-6H⁺,6CI^?) as their hexa-hydrochloride salts have been determined. 1-6H⁺ binds specifically two CI^? anions above and below the almost planar hexaammonium macrocycle yielding a dinuclear CI^? complex. The hexacation 2-6H⁺ on the other hand interacts preferentially with three CI^? anions of the six present in the solid state. Among the three closest anions, one of them, interacting with four ammonium groups, is located in the centre of the macrocycle which adopts a “pocket-like” conformation. Potentiometric and ³⁵CI NMR experiments demonstrate that 2-6H⁺ also binds CI^? in aqueous solution. Subsequent extensive molecular dynamics computational studies starting from X-ray coordinates show that the solid state structure is representative of the solution conformations for I-6H⁺, whereas the conformations of 2-6H⁺ are strongly affected by intramolecular interactions between the ammonium centres and O-atoms of the ether linkage as well as by intermolecular interactions with H₂O molecules and CI^? counterions.     

Fragmentations of Hydroxymethyl Radical Cation: An Ab Initio Study

The probable fragmentation channels of hydroxymethyl radical cation were studied through the H‐and H₂‐abstraction and C‐O bond breaking reactions including their related isomerization reactions. The energy barriers for hydroxymethyl cation undergoing isomerization reactions are generally higher than those undergoing the concerted 1,2‐elimination reactions to generate CHO⁺ and H₂. The fragmentation reaction to form CHO⁺ and H₂ through the 1,2‐elimination pathways is the major fragmentation channel for hydroxymethyl cation, consistent with the experimental observation. H abstraction from the hydroxyl group of CH₂OH⁺ is more difficult than that from the methylene group. The feasible path to lose H is to generate CHOH₂⁺ through hydrogen transfer reaction as the first step and then to undergo H‐elimination to generate trans‐CHOH⁺. Among all the reactions found in this study, the OH‐elimination to generate CH₂⁺ has the highest energy barrier. Our calculation results indicate that the major signals contributed from the related species of hydroxymethyl cation found in the mass spectrum should be m/e 29, m/e 30.     

Density functional theory study of the interaction of CP2*ZrCH 3+ (Cp* = C5H5, C5Me5, and C13H9) with ethylene molecule

Density functional theory was used to study gas-phase reactions between the Cp₂*ZrMe⁺ cations, where Cp* = C₅H₅ (1), Me₅Cp = C₅Me₅ (2), and Flu = C₁₃H₉ (3), and the ethylene molecule, Cp₂*ZrMe⁺ + C₂H₄ → Cp₂*ZrPr⁺ → Cp₂*ZrAllyl⁺ + H₂. The reactivity of the Cp₂*ZrMe⁺ cations with respect to the ethylene molecule decreased in the series 1 > 3 ≈ 2. Substitution in the Cp ring decreased the reactivity of the Cp₂*ZrMe⁺ cations toward ethylene, in agreement with the experimental data on the comparative reactivities of complexes 1 and 3. The two main energy barriers along the reaction path (the formation of the C-C bond leading to the primary product Cp₂*ZrPr⁺ and hydride shift leading to the secondary product Cp₂*Zr(H₂)Allyl⁺) vary in opposite directions in the series of the compounds studied. For Flu (3), these barriers are close to each other, and for the other compounds, the formation of the C-C bond requires the overcoming of a higher energy barrier. A comparison of the results obtained with the data on the activity of zirconocene catalysts in real catalytic systems for the polymerization of ethylene led us to conclude that the properties of the catalytic center changed drastically in the passage from the model reaction in the gas phase to real catalytic systems.     

Thermodynamics and kinetics of complexation of iron(III) ion by picolinic and dipicolinic acids

The complexation reactions of iron(III) with 2-pyridine carboxylic acia (picolinic acid) and 2,6-pyridine dicarboxylic acid (dipicolinic acid) in aqueous solutions have been studied by spectrophotometric and stopped flow techniques. Equilibrium constants were determined for the 1 : 1 complexes at temperatures between 25 and 80°C. The values obtained are: Picolinic Acid (HL): Fe³⁺+ H₂L⁺? FeHL³⁺+H+(K₁ = 2.8,ΔH = 2 kcal mole^?1 at 25°C, μ = 2.67 M) Dipicolinic Acid (H₂D): Fe³⁺+H₂D? FeD⁺+2H⁺(K₁K_1A= 227 M, ΔH = 3.4 kcal mole^?1 at 25°C,μ = 1.0 M). The rate constants for the formation of these complexes are also given. The results are used to evaluate the effects of these two acids upon the rate of dissolution of iron(III) from its oxides.     

Separation and Quantitation of O-Phthalaldehyde Derivatives of Taurine and Related Compounds in a High Performance Liquid Chromatography (HPLC) System

Abstract

A sensitive specific assay for taurine using high performance liquid chromatograpy and fluorescence measurement is described. The method employs precolumn derivatization with o-phthalaldehyde in the presence of ethanethiol. Taurine is clearly separated from other amino acids including its precursors hypotaurine and cysteine sulfinic acid. The fluorescence peak height is linear between 1 and 100 picomoles of taurine. There is clear separation of taurine from a contaminant of other taurine assays, α-glycerophosphoryl ethanolamine.     

Kinetics and mechanism of autocatalyzed reaction between Phenyl Hydrazine and Toluidine blue in aqueous solution

The kinetics and mechanism of reduction of aqueous toluidine blue (TB⁺) by phenyl hydrazine (Pz), which exhibits nonlinear behavior, is studied spectrophotometrically at 630 nm. Typical kinetic curves exhibited autocatalytic characteristics. The role of H⁺ as an autocatalyst is established. Rate constants for the uncatalyzed and acid catalyzed reactions are determined. The forward rate constants for the uncatalyzed and acid catalyzed reactions were 1.4 × 10⁻² M⁻¹ s⁻¹ and 60 M⁻¹ s⁻¹. Reaction products are toluidine white, phenol, and an azo dye. From the stoichiometric ratios, the major reaction is Pz + 2 TB⁺ + H₂O = PhOH + 2 TBH + 2 H⁺ + N₂. The rate expression and a detailed 12‐step reaction mechanism supported by simulations are proposed. ©1999 John Wiley & Sons, Inc. Int J Chem Kinet: 31: 83–88, 1999     

Reactions of NO2+ and solvated NO2+ ions with aromatic compounds and alkanes

The rate constants and modes of reaction of NO₂⁺ and C₂H₅ONO₂NO₂⁺ with aromatic compounds and alkanes have been determined in a pulsed ion cyclotron resonance mass spectrometer. Both ions undergo competing charge transfer and substitution reactions (NO₂⁺ + M → MO⁺ + NO; C₂H₅ONO₂NO₂⁺ + M → MNO₂⁺ + C₂H₅ONO₂) with aromatic molecules. In both cases, the probability that a collision results in charge transfer increases with increasing exothermicity of that process. The C₂H₅ONO₂NO₂⁺ ion does not undergo charge transfer with molecules having an ionization potential greater than about 212 kcal/mol (9.2 eV); this observation leads to an estimate of 13 kcal/mol for the binding energy between NO₂⁺ and C₂H₅ONO₂. The importance of the substitution reaction depends on the number of substituents on the aromatic ring and the molecular structure, and, in the case of C₂H₅ONO₂NO₂⁺ ions, on the energetics of the competing charge transfer process. Both NO₂⁺ and C₂H₅ONO₂NO₂⁺ undergo hydride transfer reactions with alkanes. For both these ions, k(hydride transfer)/k (collision) increases with increasing exothermicity of reaction, but in both cases the rate constants of reaction are unusually low when compared with other hydride transfer reactions of comparable exothermicity which have been reported in the literature. This is interpreted as evidence that the attack on the alkane preferentially involves the nitrogen atom (where the charge is localized) rather than one of the oxygen atoms of NO₂⁺.     

Structure and fragmentations of [C3H7S]+ ions

The principal fragmentation reactions of metastable [C₃H₇S]⁺ ions are loss of H₂S and C₂H₄. These reactions and the preceding isomerizations of [C₃H₇S]⁺ ions with six different initial structures were studied by means of labelling with ¹³C or D. From the results it is concluded that the loss of H₂S and C₂H₄ both occur at least mainly from ions with the structure [CH₃CH₂CH? SH]⁺ or from ions with the same carbon sulfur skeleton, with the exception of the ions with the initial structure [CH₃CH₂S? CH₂]⁺, which partly lose C₂H₄ without a preceding isomerization. For all ions, more than one reaction route leads to [CH₃CH₂CH?SH]⁺. It is concluded that the loss of H₂S is at least mainly a 1,3-elimination from the [CH₃CH₂CH?SH]⁺ ions. Both decomposition reactions are preceded by extensive but incomplete hydrogen exchange.     

Copper(II) catalyses the reduction of perchlorate by both formaldehyde and by dihydrogen in aqueous solutions

Abstract

During an effort to synthesize the trans-III-copper(II) complex with 1,4,8,11-tetramethyl-pyro-phosphonate-1,4,8,11-tetra-aza-cyclo-tetradecane, using only perchlorate salts, it was noted that the perchlorate is reduced to chloride. Analysis of the reactions leading to this surprising result points out that Cu(H₂O)₄²⁺ catalyzes the reduction of perchlorate by H₂ and by CH₂O. These reactions are slow at room temperature and ambient pressures. A plausible mechanism, supported by DFT calculations, is proposed pointing out that the role of CuH⁺ under mild conditions cannot be ignored.     

DFT Study on the Gold(I)-Catalyzed Dehydrogenative Heterocyclization of 2-(1-Alkynyl)-2-alken-1-ones to form 2,3-Furan-Fused Carbocycles: Effects of Additives C5H5NO vs. PhNO

A computational study with the M06/B3LYP density functional is carried out to explore the effects of additives C₅H₅NO vs. PhNO on the gold-catalyzed dehydrogenative heterocyclization of 2-(1-alkynyl)-2-alken-1-ones to form 2,3-furan-fused carbocycles. The following three conclusions are obtained based on our theoretical calculations. (a) The Au(I) catalyst plays a crucial role on the intramolecular cyclization reaction. (b) Both additives C₅H₅NO and PhNO as the proton shuttle can assist proton-transfer through a two-step proton-transfer mechanism including the protonation of additive and the deprotonation of additive-H⁺, whereas the catalytic capability of PhNO is weaker than that of C₅H₅NO (energy barrier: 90.6 vs. 33.2 kJ/mol). (c) C₅H₅NO-H⁺ has stronger stability comparing with PhNO-H⁺ because the basicity of C₅H₅NO is stronger than that of PhNO, which cause that the energy barrier of ts3 + PhNO-H⁺ (131.5 kJ/mol) is higher than that of ts3 + C₅H₅NO-H⁺ (60.5 kJ/mol) in the intermolecular addition. Therefore, the base strength is the primary factor that controls the catalytic capability of additives C₅H₅NO vs. PhNO. These studies are expected to improve our understanding of Au(I)-catalyzed reactions involving additive as the cocatalyst and to provide guidance for the future design of new catalysts and new reactions.