Inducement and stabilization of G-quadruplex DNA by a thiophene-containing dinuclear ruthenium(II) complex

G-quadruplex structures are attractive targets for the development of anticancer drugs, as their formation in human telomere could impair telomerase activity, thus inducing apoptosis in cancer cells. In this work, a thiophene-containing dinuclear ruthenium(II) complex, [Ru₂(bpy)₄(H₂bipt)]⁴⁺ {bpy = 2,2′-bipyridine, H₂bipt = 2,5-bis[1,10]phenanthrolin[4,5-f]-(imidazol-2-yl)thiophene}, was prepared and the interaction between the complex and human telomeric DNA oligomers 5′-G₃(T₂AG₃)₃-3′ (HTG21) has been investigated by UV-Vis, fluorescence and circular dichroism (CD) spectroscopy, fluorescence resonance energy transfer (FRET) melting assay, polymerase chain reaction (PCR) stop assay, fluorescent intercalator displacement (FID) titrations, Job plot and color reaction studies. The results indicate that the complex can well induce and stabilize the formation of antiparallel G-quadruplex of telomeric DNA in the presence or absence of metal cations, and the ΔT_m value of the G-quadruplex DNA treated with the complex was obtained to be 12.8 °C even at levels of 50-fold molar of duplex DNA (calf-thymus DNA), suggesting that the complex exhibits higher G-quadruplex DNA selectivity over duplex DNA. The complex shows high interaction ability with G-quadruplex DNA at (1.17 ± 0.12) × 10⁷ M^?1 binding affinity using a 2:1 [complex]/[quadruplex] binding mode ratio. A novel visual method has been developed here for making a distinction between G-quadruplex DNA and duplex DNA by our ruthenium complex binding hemin to form the hemin-G-quadruplex DNAzyme.     

Synthesis,DNA-binding,and photocleavage studies of ruthenium(II) complexes with an asymmetric ligand

An asymmetric ligand (pdpiq?=?2-(pyridine-2-yl)-6,7-diphenyl-1-H-imidazo[4,5-g]quinoxaline) and its ruthenium complexes with [Ru(L)₂pdpiq]²⁺ (L?=?bpy (2,2′-bipyridine) or phen (1,10-phenanthroline)) have been synthesized and characterized by elemental analysis, ES-MS, and ¹H NMR. The DNA-binding behaviors of these complexes were studied by spectroscopic methods and viscosity measurements. The results indicate that the complexes can intercalate into DNA base pairs. When irradiated at 365?nm, the two complexes promote the cleavage of plasmid pBR322DNA. The mechanism of DNA cleavage is an oxidative process by generating singlet oxygen.     

Synthesis,DNA-binding,and photocleavage properties of Ru(II) complexes containing dppz-based ligand

A ligand ipdp (ipdp?=?indeno[1′,2′?:?5,6]pyrazino[2,3-i]dipyrido[3,2-a?:?2′,3′-c]phenazine-8-one) and its ruthenium complexes, [Ru(L)₂(ipdp)]²⁺ (L?=?bpy (2,2′-bipyridine), phen (1,10-phenanthroline)), have been synthesized and characterized by elemental analysis, electrospray mass spectra, and ¹H NMR. The interaction between the complexes and calf thymus DNA (CT-DNA) has been investigated by spectroscopic methods and viscosity measurements. The results indicate that the complexes can bind to CT-DNA in an intercalative mode. In addition, both complexes promote the photocleavage of plasmid pBR322 DNA under irradiation. The mechanistic studies reveal that singlet oxygen ¹O₂ plays a significant role in DNA photocleavage.     

Synthesis,crystal structure and DNA-binding properties of ruthenium(II) polypyridyl complexes with dicationic 2,2′-dipyridyl derivatives as ligands

New Ru(II) complexes with dicationic ligand, [Ru(phen)₂L¹]⁴⁺(1) and [Ru(phen)₂L²]⁴⁺(2) (phen = 1,10-phenanthroline; L: L¹ = 5,5′-di(1-(triethylammonio)methyl)-2,2′-dipyridyl cation; L² = 5,5′-di(1-(tributylammonio)methyl)-2,2′-dipyridyl cation) have been synthesized and structurally characterized. The interaction of these complexes with calf thymus DNA (CT-DNA) has been investigated. The intrinsic binding constants (K_b: 1, 7.73 × 10⁴ M⁻¹; 2, 2.50 × 10⁴ M⁻¹) determined by absorption spectral titrations of these complexes with CT-DNA indicate the DNA-binding affinity of 1 is stronger than that of 2. Both complexes can display luminescence either alone in aqueous solution or in the presence of DNA. Equilibrium dialysis experiments monitored by CD spectroscopy reveal the preferential binding of the Δ-enantiomer to the right-handed CT-DNA. DNA-viscosity studies suggest that the binding modes are different, 1 may partially intercalate between DNA base-pairs while 2 most likely interact with DNA in an electrostatic binding mode.     

双大环配体与铜双核配合物的合成、晶体结构和磁偶合性质

由新型双功能配体2,6-双(1,5,9-三氮杂环十二烷)-2,6-二甲基苯甲酸(L)与溴化铜在甲醇中反应得到新型铜双核配合物[Cu~2LBr~2]Br.3H~2O单晶。晶体结构分析表明:2个Cu(II)中心离子由配体L中的羧酸基团桥联;2个等价的Cu(II)中心离子均由双功能配体L的1,5,9-三氮杂环十二烷([12aneN~3)的3个氮原子和羧酸的1个氧原子及1个Br^-离子配位,并都处在三角双锥的配位环境中;分子内Cu...Cu双核间的距离为0.5884(6)nm。变温磁化率数据表明:在同一分子中的2个铜核之间存在反铁磁偶合作用(J=-22.49cm^-^1)。     

Synthesis,characterization and DNA-binding properties of Ru(II) complexes coordinated by ofloxacin as potential antitumor agents

Three Ru complexes coordinated by oxfloxacin, [Ru(L)₂(OFX)]Cl·2H₂O (L = bpy, 1; dmbpy, 2; phen, 3; and OFX = ofloxacin), were synthesized and characterized. These complexes can inhibit the growth of cervical cancer HeLa cells efficiently. Furthermore, these three complexes exhibited excellent binding affinities with DNA, as confirmed by spectroscopy methods and viscosity experiments. Therefore, the synthesized Ru(II) complexes have excellent DNA-binding abilities with potential applications in cancer chemotherapy.     

Synthesis,crystal structure,DNA-binding properties,and antioxidant activity of a V-shaped ligand bis(N-methylbenzimidazol-2-ylmethyl)benzylamine and its zinc(II) complex

A V-shaped ligand bis(N-methylbenzimidazol-2-ylmethyl)benzylamine (L) and its zinc(II) complex, [ZnL ₂](pic)₂?·?2CH₃CN (pic?=?picrate), have been synthesized and characterized by physico-chemical and spectroscopic methods. Single-crystal X-ray crystallographic analysis revealed that the Zn(II) complex possesses a distorted trigonal bipyramidal geometry. Supramolecular interactions arising from various intra- or intermolecular π···π stacking interactions contributed to the form of the multidimensional configuration. Interactions of L and Zn(II) complex with DNA were monitored using spectrophotometric methods and viscosity measurements. The results suggest that L and Zn(II) complex both bind to DNA via intercalation and Zn(II) complex binds to DNA more strongly than L. Moreover, the Zn(II) complex also exhibited potential antioxidant properties in vitro.     

Effect of substituents on DNA-binding behaviors of ruthenium(II) complexes: [Ru(dmb)2(dtmi)]2+ and [Ru(dmb)2(dtni)]2+

Two Ru(II) complexes [Ru(dmb)₂(dtmi)](ClO₄)₂ (1) (dmb = 4, 4′-dimethyl-2, 2′-bipyridine, dtmi = 3-(pyrazin-2-yl)-as-triazino[5, 6-f]-5-methoxylisatin) and [Ru(dmb)₂(dtni)](ClO₄)₂ (2) (dtni = 3-(pyrazin-2-yl)-as-triazino[5, 6-f]-5-nitroisatin) have been synthesized and characterized by elemental analysis, ES-MS, and ¹H NMR. DNA-binding behaviors of these complexes have been investigated by spectroscopic titration, viscosity measurements, and thermal denaturation. The results indicate that the two complexes interact with calf thymus DNA by intercalation.     

Synthesis and characterization of Co(II), Ni(II), Zn(II) and Cu(II) complexes with a new tetraazamacrocyclic Schiff base ligand containing a piperazine moiety: X-ray crystal structure determination of the Co(II) complex

Two macrocyclic Schiff base ligands, L¹ [1+1] and L² [2+2], have been obtained in a one-pot cyclocondensation of 1,4-bis(2-formylphenyl)piperazine and 1,3-diaminopropane. Unfortunately, because of the low solubility of both ligands, their separation was unsuccessful. In the direct reaction of these mixed ligands (L¹ and L²) and the appropriate metal ions only [CoL¹(NO₃)]ClO₄, [NiL¹](ClO₄)₂, [CuL¹](ClO₄)₂ and [ZnL¹(NO₃)]ClO₄ complexes have been isolated. All the complexes were characterized by elemental analyses, IR, FAB-MS, conductivity measurements and in the case of the [ZnL¹(NO₃)]ClO₄ complex with NMR spectroscopy.     

An unexpected fluorescent probe for G-quadruplex DNA based on a nitro-substituted ruthenium (II) complex

The detection of G-quadruplex is of major interest. Nitro-substituted ruthenium (II) complexes have attracted much attention due to fluorescent sensitivity to environment change. We report here a new nitro-substituted ruthenium (II) complex, [Ru (phen)₂(hnoip)]²⁺ ( 1) (hnoip = 2-(2-hydroxyl-5-nitrophenyl)imidazo[4,5-f][1,10-phenanthroline]), which displays distinct fluorescent properties in aqueous solution and non-aqueous solvents. This complex exhibits large fluorescence enhancement after binding with G-quadruplex DNA, and displays good fluorescent selectivity over other DNAs. The limit of detection is 6 nm for 22AG in Na⁺ and 43 nm for 22AG in K⁺, respectively. The results demonstrated that nitro-substituted ruthenium (II) complexes can be utilized to design as G-quadruplex fluorescent probes by protection of the nitro group on the complex from water.     

A robust NNP-type ruthenium (II) complex for alcohols dehydrogenation to esters and pyrroles

A Ru (II) complex bearing pyridyl-based benzimidazole-phosphine tridentate NNP ligand was synthesized and structurally characterized by NMR, IR. The complex can efficiently and selectively catalyze the acceptorless dehydrogenation of primary alcohols to esters under relatively mild conditions and the synthesis of pyrroles by means of the reactions of secondary alcohols and β-amino alcohols through acceptorless deoxygenation condensation.     

Synthesis, characterization and DNA-binding studies of ruthenium(II) mixed-ligand complexes containing dipyrido[1,2,5]oxadiazolo[3,4-b]quinoxaline

A novel ligand dipyrido[1,2,5]oxadiazolo[3,4-b]quinoxaline (dpoq) and its complexes [Ru(bpy)₂(dpoq)]²⁺ and [Ru(phen)₂(dpoq)]²⁺ (bpy = 2,2′-bipyridine; phen = 1,10-phenanthroline) have been synthesized and characterized by elemental analysis, electrospray mass spectra and ¹H NMR. The interaction of Ru(II) complexes with calf thymus DNA (CT-DNA) was investigated by absorption spectroscopy, fluorescence spectroscopy, thermal denaturation and viscosity measurements. Results suggest that two Ru(II) complexes bind to DNA via an intercalative mode.     

Synthesis and spectroscopic properties of a new bipyridine-bipyrazoyl(pyridine)-thiocyanato-ruthenium(II) complex

The complex [Ru(II)(dcbpyH₂)(bdmpp)NCS](PF₆) (1) (where dcbpyH₂ is 2,2′-bipyridine-4,4′-dicarboxylic acid, bdmpp is 2,6-bis(3,5-dimethyl-N-pyrazoyl)pyridine,) is synthesized and characterized extensively by ¹H NMR and ¹³C NMR 1D and 2D, mass spectroscopy, cyclic voltammetry, electronic absorption spectroscopy and IR. The half-wave potential of the Ru(II)/Ru(III) redox couple was measured at E_1/2=+0.795 V versus Ag/AgCl in CH₃CN. The complex presents three intense metal-to-ligand charge transfer (MLCT) (d_M→π_L*) absorption bands centered at 383 (=21 300 M⁻¹ cm⁻¹), 432 (=22 400 M⁻¹ cm⁻¹) and 475 nm (=23 400 M⁻¹ cm⁻¹), respectively. The absorbance is extremely strong between 400 and 500 nm and even at 620 nm, the extinction coefficient is still high (=3768 M⁻¹ cm⁻¹). The strong π-acceptor property of the trans-isothiocyanate ligand compared with the Cl⁻ ligand is probably the cause of the blue-shift observed in complex 1. These properties make the complex potentially promising for the photosensitization process. The incorporation of TiO₂ photoelectrodes derivatized with this complex into a solar cell using a composite polymer/inorganic oxide solid-state electrolyte confirmed its sensitizing ability. Incident monochromatic photon-to-current conversion efficiency (IPCE) values of about 30% and overall energy conversion efficiency (η) of 1.7% were obtained.     

Luminescence and oxygen sensing properties of ORMOSILs covalently grafted with a novel ruthenium(II) complex

A series of VTES/TEOS composite xerogels covalently grafted with a novel complex Ru(phen)₂(Dppz-Si)Cl₂ were prepared, using the alkoxysilane-modified dipyrido[3,2-a:2′,3′-c]phenazine compound (denoted as Dppz-Si) as the second ligand of the Ru(phen)₂Cl₂ (phen = 1,10-phenanthroline) complex and a precursor of the sol–gel process. Bulk xerogels were obtained by co-hydrolyzing and co-condensation from a mixture of triethoxysilane (TEOS), Ru(phen)₂(Dppz-Si)Cl₂ and Vinyltriethoxysilane (VTES). The luminescence intensity of composite xerogels is enhanced by 18.2 times, and the sensitivity is improved from 1.1 to 3.1 by optimizing the molar ratio of VTES to TEOS. The composite xerogel containing 80% VTES in precursor was optimal, exhibiting the maximum luminescence intensity and sensitivity. These results indicate that the complex Ru(phen)₂(Dppz-Si)Cl₂ is sensitive to oxygen concentration, VTES is a kind of excellent organic modifier and can greatly improved photoluminescent (PL) and oxygen sensing performances.     

Synthesis and Crystal Structure of a Copper(II) Complex with Benzilic Acid and 1,10-Phenanthroline

A new complex [Cu(phen)3][(C6H5)2C(OH)COO]2·6H2O was prepared by self-assembly of benzilic acid, 1,10-phenanthroline (phen), and copper perchlorate. It crystallizes in triclinic, space group P1, with a = 1.14661(17), b = 1.6455(2), c = 1.6457(2) nm, α = 74.779(2), β = 74.904(3), γ = 84.424(3)o, V = 2.8914(7) nm3, Dc = 1.340 g/cm3, Z = 2, F(000) = 1218, GOOF = 1.018, the final R = 0.0643 and wR = 0.1633. The crystal structure shows that the copper ion is coordinated with six nitrogen atoms from six 1,10-phenanthroline molecules, forming a distorted octahedral coordination geometry.     

Synthesis,structure, and DNA-binding properties of manganese(II) and nickel(II) complexes with tris(N-ethylbenzimidazol-2-ylmethyl)amine ligand

Tris(N-ethylbenzimidazol-2-ylmethyl)amine (Etntb), [Mn(Etntb)(DMF)(H₂O)](pic)₂ (1), and [Ni(Etntb)(DMF)(H₂O)](pic)₂ (2) (pic?=?picrate) have been synthesized and characterized by elemental analyses, molar conductivities, UV–Visible spectra, and IR spectra. Single-crystal X-ray diffraction revealed that the complexes have the same arrangement with distorted octahedral coordination geometries. DNA-binding properties of the free ligand, 1, and 2 have been investigated by electronic absorption, fluorescence, and viscosity measurements. The results suggest that the ligand and its complexes bind DNA via intercalation, and their binding affinity for DNA follows the order 2?>?1?> ligand.     

A V-shaped ligand bis(N-methylbenzimidazol-2-ylmethyl) benzylamine with its cobalt(II) complex: synthesis,crystal structure,DNA-binding properties,and antioxidant activity

A V-shaped ligand bis(N-methylbenzimidazol-2-ylmethyl)benzylamine (bmbb) and its cobalt complex, [Co(bmbb)₂](pic)₂ (pic?=?picrate), have been synthesized and characterized by physico-chemical and spectroscopic methods. Single-crystal X-ray revealed that the coordination sphere around Co(II) is distorted octahedral with an N₆ ligand set from two tridentate bmbb. The DNA-binding properties of bmbb and the Co(II) complex were investigated by spectrophotometric and viscosity measurements. The results suggest that bmbb and Co(II) complex both bind to DNA via intercalation, and the Co(II) complex binds to DNA more strongly than bmbb. The Co(II) complex also exhibited potential antioxidant properties in vitro studies.     

Syntheses and crystal structures of nickel(II), copper(II), and zinc(II) complexes with a biphenyl-bridged bis(pyrrole-2-yl-methyleneamine) ligand

The reactions of nickel(II), copper(II), and zinc(II) acetate salts with a potentially tetradentate biphenyl-bridged bis(pyrrole-2-yl-methyleneamine) ligand yielded three complexes with different coordination geometries. X-ray crystal structural analysis reveals that in the nickel(II) complex each nickel is five-coordinate, distorted trigonal bipyramid. In the copper(II) complex, each copper is four-coordinate, between square planar and tetrahedral. In the zinc(II) complex, each zinc is four-coordinate with a distorted tetrahedral geometry and the molar ratio of the zinc and ligand is 1 : 2.     

Synthesis,characterization and fluorescence spectra of mixed ligand Zn(II), Cd(II) and Hg(II) complexes with 1,10-phenanthroline-5,6-dione ligand

The novel mixed ligand complexes [M(bpy)(phen-dione)](PF₆)₂ (M?=?Zn(II), Cd(II) and Hg(II), bpy?=?2,2^′-bipyridine and phen-dione?=?1,10-phenanthroline-5,6-dione) have been synthesized and characterized by elemental analysis, IR, ¹H NMR and electronic absorption spectroscopies. The ν(C=O) of coordinated phen-dione in these complexes are very similar to the free phen-dione ligand showing that phen-dione is not coordinated to metal ion from its C=O sites. Absorption spectra of the complexes show two absorption bands for intraligand transitions. These absorption bands show dependence to the dielectric constant of solvent. These complexes exhibit an intensive fluorescence band around 535?nm in DMF when the excitation wavelength is 260?nm at room temperature. The fluorescence intensity of these complexes is larger than that of the free ligand.