Synthesis,characterization and crystal structure of a novel three-dimensional supramolecular architecture formed by manganese(II) and pyridine-2,5-dicarboxylic acid

A novel three-dimensional supramolecular compound formed by Mn(II) and pyridine-2,5-dicarboxylic acid of formula [Mn(Pydc)₂(H₂O)₂] (Pydc?=?pyridine-2,5-dicarboxylic acid) has been synthesized and characterized by elemental analyses, IR, electronic spectra, thermogravimetric analysis and X-ray diffraction techniques. The X-ray structure shows that the central Mn(II) ion is coordinated by two water molecules and two chelated Pydc ligands. Water molecules coordinate with Mn(II) ions in the cis mode. Intermolecular hydrogen bonds play an important role in stabilization of the lattice and construction of the supramolecular network.     

Syntheses, crystal structures, spectral and thermal analysis and biological activities of copper(II)-pyridine-2,5-dicarboxylate complexes with 4-methylimidazole, imidazole, and 3,4-dimethylpyridine

In this study, three novel Cu(II)-pyridine-2,5-dicarboxylate (pydc) complexes with 4-methylimidazole (4-Meim), [Cu(pydc)(H₂O)(4-Meim)₂]·H₂O (1), imidazole (im), {[Cu(μ-pydc)(im)₂]·2H₂O}_n (2), and 3,4-dimethylpyridine (dmpy), [Cu(μ-pydc)(H₂O)(dmpy)]_n (3) have been synthesized. Elemental and thermal analyses, magnetic susceptibilities, IR and UV/vis spectroscopic studies have been performed to characterize the complexes. The molecular structures of mononuclear (1) and polynuclear (2 and 3) complexes have been determined by the single crystal X-ray diffraction technique. In 1 and 2, Cu(II) ions have distorted square planer geometry, while 3 has distorted octahedral coordination. The pyridine-2,5-dicarboxylate exhibits three different coordination modes namely bidentate (1), tridentate (2) and tetradentate (3). The complex 1 is further constructed to form three-dimensional framework by hydrogen bonding, C–Hπ and ππ stacking interactions. The adjacent chains of 2 and 3 are then mutually linked via hydrogen bonding, ππ and C–Hπ interactions, which are further assembled to form three-dimensional framework. 1 exhibits the magnetic moment value of 1.70 BM, which corresponds to one of the unpaired electron, while the polynuclear complexes 2 and 3 exhibit 1.58 and 1.46 BM, which is lower than the spin only value for one unpaired electron, indicates to antiferromagnetic effect. The first thermal decomposition process of all the complexes is endothermic dehydration. This stage is followed by partial (or complete) decomposition of the neutral and pydc ligands. In the later stage, the remained organic residue exothermically burns. The final decomposition products which identified by IR spectroscopy were the CuO.     

Hydrogen bonding networks and proton transfer compounds of cobalt(II) and copper(II) with pyridine-2,5-dicarboxylate

Three Co(II) and Cu(II)-pyridine-2,5-dicarboxylate (pydc) proton transfer compounds with 1,4-butanediamine (ben) and 2,2-dimethylpropane-1,3-diamine (dmpen), trans-(H₂ben)[Co(pydc)₂(H₂O)₂]·4H₂O (1), trans-(H₂dmpen)[Co(pydc)₂(H₂O)₂]·2H₂O (2) and (H₂ben)₂[Cu₂(μ-pydc)₄(H₂O)₂] (3) have been synthesized and characterized by the methods of elemental, spectroscopic (IR and UV-Vis), thermal (TG/DTG, DTA) analysis, magnetic measurement and single crystal X-ray diffraction. The crystallographic analysis revealed that the complexes consist of [Co(pydc)₂(H₂O)₂]²⁻ anion, bis(protonated) diamine cation (H₂ben for 1 and H₂dmpen for 2) and four and two crystal water molecules, respectively. The Co(II) ions are coordinated by two pydc and two aqua ligands. The bis(deprotonated) pydc ligands coordinate to the Co(II) ions through the nitrogen atom of pyridine ring and the oxygen atom of carboxylate group, creating a chelate ring. The distorted octahedral geometries are completed by two trans aqua ligands at axial positions. The molecular structure of the complex 3 consists of dinuclear [Cu₂(μ-pydc)₄(H₂O)₂]⁴⁻ units and bis(protonated) 1,4-butanediammonium cation. In the structure, each Cu(II) ion is coordinated by two nitrogen and two oxygen atoms from two pydc ligands and one oxygen atom from aqua ligand, forming a distorted square pyramidal geometry.     

Luminescent lanthanide complexes with 4-acetamidobenzoate: Synthesis, supramolecular assembly via hydrogen bonds, crystal structures and photoluminescence

Four new luminescent complexes, namely, [Eu(aba)₂(NO₃)(C₂H₅OH)₂] (1), [Eu(aba)₃(H₂O)₂]·0.5 (4, 4′-bpy)·2H₂O (2), [Eu₂(aba)₄(2, 2′-bpy)₂(NO₃)₂]·4H₂O (3) and [Tb₂(aba)₄(phen)₂(NO₃)₂]·2C₂H₅OH (4) were obtained by treating Ln(NO₃)₃·6H₂O and 4-acetamidobenzoic acid (Haba) with different coligands (4, 4′-bpy=4, 4′-bipyridine, 2, 2′-bpy=2, 2′-bipyridine, and phen=1, 10-phenanthroline). They exhibit 1D chains (1-2) and dimeric structures (3-4), respectively. This structural variation is mainly attributed to the change of coligands and various coordination modes of aba molecules. Moreover, the coordination units are further connected via hydrogen bonds to form 2D even 3D supramolecular networks. These complexes show characteristic emissions in the visible region at room temperature. In addition, thermal behaviors of four complexes have been investigated under air atmosphere. The relationship between the structures and physical properties has been discussed.     

New copper(II) complexes including pyridine-2,5-dicarboxylic acid: synthesis,spectroscopic, thermal properties,crystal structure and how these complexes interact with purified PON 1 enzyme

We report the synthesis of two square-pyramidal copper(II) complexes, [Cu(2,5-pydc)(2-aepy)(H₂O)]·H₂O, 1, and [Cu(2,5-pydc)(2-ampy)(H₂O)]·H₂O, 2 (2-aepy = 2-(aminoethyl)pyridine, 2-ampy = 2-(aminomethyl)pyridine, 2,5-pydc = pyridine-2,5-dicarboxylic acid or isocinchomeronic acid). The synthesized complexes have been characterized by X-ray diffraction, FT-IR, elemental, and thermal analysis techniques. The crystal structure of 1 was established by X-ray analysis. Powder X-ray diffraction analysis showed that the complexes are pure. The inhibition of human serum paraoxonase 1 (PON 1, EC 3.1.8.1) enzyme with these complexes were investigated. We used diethyl 4-nitrophenyl phosphate as a substrate to measure the paraoxonase activity of PON 1 enzyme spectrophotometrically. Complexes 1 and 2 decreased the in vitro PON 1 activity with different inhibition mechanisms. Complexes 1 and 2 inhibited paraoxonase activity of this enzyme as competitively and noncompetitively, respectively.     

A disparate 3-D silver(I) coordination polymer of pyridine-3,5-dicarboxylate and pyrimidine with strong intermetallic interactions: X-ray crystallography,photoluminescence and antimicrobial activity

A polymeric silver(I) complex, [Ag₄(μ-pydc)₂(μ-pm)₂]_n (1) (pydc = pyridine-3,5-dicarboxylate and pm = pyrimidine), has been synthesized and characterized by elemental analysis, IR spectroscopy, thermal analysis, and single-crystal X-ray diffraction. X-ray crystallographic data of 1 revealed that pydc exhibits two different coordinaton modes that play a key role in the construction of the 3-D crystal network including Ag–carboxylate clusters in which close Ag–Ag distances exist. The magnitudes of close Ag–Ag interactions in second-order energy (E²) have been revealed by natural bond orbital analysis performed with single point energy calculation using the experimental geometry of 1. Furthermore, the luminescent properties of 1 show strong fluorescence with two emission maxima in the visible region. Also, 1 has antifungal activity on Candida albicans (MIC value, 4 μg mL^?1) and good antibacterial activity on micro-organisms (MIC value, 64–256 μg mL^?1).     

Tridentate (NNO) Schiff-base copper(II) complex: synthesis,crystal structure,and magnetic study

A new azido adduct of a tridentate Schiff-base copper(II) complex has been synthesized and characterized structurally and magnetically. X-ray single crystal structure analysis reveals that the asymmetric unit of [Cu₂(L)₂(µ_1,1-N₃)₂][Cu(L)(N₃)] (1) [HL = 1-(N-ortho-hydroxyacetophenimine)-2,2-diethyl-aminoethane] has two independent moieties. One of these forms a dimer, containing end-on azido bridges, with its center of inversion related equivalents. The complex crystallizes in monoclinic space group P₂1/c with a = 10.112(2), b = 31.938(4), c = 9.718(2) Å and β = 95.00(2)°. Variable temperature magnetic susceptibility data show antiferromagnetic interactions between copper(II) centers.     

Copper(II) complex with 6-(3,5-dimethyl-1H-pyrazol-1-yl)-2-(pyridin-2-yl)pyrimidin-4-amine: synthesis,crystal structure,and electronic spectroscopy

A copper(II) complex with 6-(3,5-dimethyl-1H-pyrazol-1-yl)-2-(pyridin-2-yl)pyrimidin-4-amine (L), [CuLCl₂], has been synthesized. This compound is formed irrespective of the Cu?:?L molar ratio (Cu?:?L?=?1?:?1, 2?:?1, and 20?:?1) in the MeOH/H₂O/DMF mixture as a single product. ESI-MS data demonstrate that the additional amount of CuCl₂ above the Cu?:?L?=?1?:?1 molar ratio, is effectively solvated, and high-nuclearity species are formed in trace amounts in the solution. The complex adopts a distorted square-pyramidal geometry with two chlorides and three nitrogen atoms from L. The electronic spectrum of the complex contains a broad band with a maximum at 12,820?cm^?1 within the region characteristic for square-pyramidal chromophores CuA₅ (A?=?Cl, N). Due to Cu?···?Cl contacts, the molecules of [CuLCl₂] form the dinuclear [CuLCl₂]₂ unit. Surprisingly, the NH₂-group participates in the formation of NH?···?Cl hydrogen bonds instead of the formation of (NH?···?N3_(pyrimidine))₂ synthon, which is common for N-heteroaromatic compounds containing the NH₂-group in the α-position to aza-atom. These hydrogen bonds together with Cu?···?Cl contacts result in the formation of a 3-D-structure.     

Solid and solution states studies of two Mn(II) complexes based on N-oxidized pyridine-2,5-dicarboxylic acid

Abstract

Two coordination complexes, [Mn₂(pydco)₂(phen)₂(H₂O)₂]·2H₂O (1) and [Mn(3-pyco)₂(H₂O)₄] (2), based on Mn(II), pyridine-2,5-dicarboxylic acid N-oxide (H₂pydco), and 1,10-phenanthroline (phen) as organic ligands have been synthesized and characterized by elemental analyses, infrared spectroscopy, and single crystal X-ray diffraction. We have synthesized the first Mn(II) complex of H₂pydco. Interestingly, in situ hydrothermal decarboxylation occurred in 2 and (pydco)^2– was totally transformed into pyridine-3-carboxylate N-oxide (3-pyco)^– under hydrothermal conditions. The complexation reactions of these molecules with Mn²⁺ ions were investigated by means of solution studies. The stoichiometry of the most abundant species in the solution (prior to the pH at which precipitation occurs) was very close to that of the corresponding crystalline solid-state complexes.     

Synthesis, structure and non-linear optical property of a copper(II) thiocyanate three-dimensional supramolecular compound

A novel copper(II) thiocyanate complex [Cu(im)₂(NCS)₂] 1 (im=imidazole) has been prepared and characterized by spectroscopic analysis and crystallographic method. This supramolecular compound exhibits a three-dimensional solid state structure constituted by N–HS hydrogen bonds and π–π stacking interactions. The compound in DMF solutions has a very strong third-order non-linear optical (NLO) behavior with absorption coefficient and refractive index ₂=1.18×10⁻¹¹ mw⁻¹, n₂=−9.00×10⁻¹⁶ m²w⁻¹, respectively, and third-order NLO susceptibility χ⁽³⁾ of 7.00×10⁻¹⁰ esu.     

Two-dimensional supramolecular assembly of phenylmercury(II) and cadmium(II) complexes with a tridentate thiohydrazone NNS donor ligand: Synthesis,coordination behavior and crystal structure

The reaction of phenylmercury(II) acetate and cadmium(II) acetate with a refluxed solution of diacetylmonoxime and morpholine N-thiohydrazide formed a novel phenylmercury(II) complex, [PhHg(Hdammthiol)] (1) and a cadmium(II) complex, [Cd(Hdammthiol)₂] (2), respectively (where H₂dammthiol is the thiol form of diacetylmonoximemorpholine N-thiohydrazone (Hdammth) formed by the condensation of diacetylmonoxime and morpholine N-thiohydrazide in the presence of phenylmercury(II) and cadmium(II) ions). The complexes were characterised by elemental analyses and spectral data (electronic, infrared and ¹H NMR) and also by X-ray crystal structure analysis. The X-ray crystallography shows that the phenylmercury(II) complex attained a tricoordinated distorted T-shaped structure, while the cadmium(II) complex attained a trapezoidal bipyramidal geometry. The phenylmercury(II) complex forms a two-dimensional sheet via C–H?O and O–H?N hydrogen bonding and also forms a two-dimensional supramolecular dimer, having C–H?π synthons. Intermolecular C–H?O and O–H?O hydrogen bonding of the cadmium(II) complex forms a two-dimensional supramolecular sheet along the bc plane and posses an impressively short intermolecular C(sp³)?O(sp³) contact.     

Synthesis,crystal structure and magnetic properties of a new binuclear copper(II)-copper(II) complex of a macrocyclic oxamide

The binuclear metal complex [Cu(μ-exoO₂)cyclamCu(bpy)](ClO₄)₂·H₂O (bpy?=?2,2′-bipyridine and (exoO₂)cyclam?=?1,4,8,11-tetraazacyclotradecanne-2,3-dione) has been synthesized and characterized by single-crystal X-ray analysis and spectroscopic and magnetic measurements. The structure consists of homobinuclear [Cu(μ-exoO₂)cyclamCu(bpy)]²⁺ cations, a weakly coordinated water molecule and perchlorate ions. In each binuclear unit, Cu1, coordinated by four nitrogen atoms of the macrocyclic organic ligand is connected to Cu2 via the exo-cis oxygen atoms of the macrocyclic ligand with Cu···Cu separations of 5.151?Å; Cu2 assumes square-pyramidal geometry. Magnetic properties measured at 2–300?K show antiferromagnetic exchange between adjacent copper(II) ions.     

Synthesis and crystal structure of a two-dimensional bi-layered supramolecular network compound [Cu2(C7H8N4O)4](ClO4)2 (C7H8N4O=pyridine-3-carbaldehyde semicarbazone)

A two-dimensional bi-layered supramolecular compound [Cu₂(C₇H₈N₄O)₄](ClO₄)₂ has been synthesized by the solvothermal method, and characterized via IR and CHN elemental analysis. The single crystal X-ray data of this compound reveal the complex to be dimeric as a result of terminal –NH₂ group of the semicarbazone moiety bridging, which is relatively rare. On this bi-copper(I) complex, another remarkably structural feature is that each Cu atom adopts an unsymmetrical T-shaped geometry comprised of three N atoms from three pyridine-3-carbaldehyde semicarbazone ligands. The molecules are linked into a two-dimensional bi-layered framework by intermolecular N–H?···?O hydrogen bonds.     

Synthesis,characterization, and crystal structure of a copper(II) complex of 1,10-phenanthroline and succinate

A mixed ligand complex of Cu(II) with 1,10-phenanthroline and succinate has been synthesized from the reaction of hydrated copper nitrate, succinate, and 1,10-phenanthroline. The nature of bonding and the structure of the complex were characterized by elemental analyses, infrared spectrum, TGA/DTA, and X-ray diffraction. The crystal crystallizes in triclinic space group P 1. The complex is polymeric and the geometry around each copper varies from square planar to distorted square pyramidal or octahedral. Each copper coordinates two oxygens of succinate and two nitrogens of 1,10-phenanthroline. The thermal decomposition of the complex has also been studied by TGA and DTA under inert atmosphere.     

Sonochemical synthesis of a novel nanorod diaqua(pyridine-2,6-dicarboxylato)copper(II) 3-D supramolecular network: new precursor to prepare pure phase nanosized copper(II) oxide

A nanosized copper(II) supramolecular compound, [Cu(dipic)(H₂O)₂] _n (1) [dipic?=?2,6-pyridinedicarboxylate], has been synthesized by sonochemical method and characterized by elemental analysis, scanning electron microscopy, X-ray powder diffraction, IR spectroscopy, TGA/DTA, and BET surface area studies. The structure of single crystalline 1 developed from nanosized 1 has been determined by X-ray crystallography and further characterized by scanning electron microscopy, TGA/DTA, and BET surface area studies. The XRD studies reveal that nanorod copper(II) supramolecular compound adopts a 3-D supramolecular network owing to extensive hydrogen-bonding and π–π stacking. Solvent effects on size and morphology of nanosized 1 have been studied. Calcination of nanosized 1 at 500°C under air yields CuO nanoparticles.     

Three copper(II) complexes of thiophene-2,5-dicarboxylic acid with dissimilar ligands: Synthesis, IR and UV–Vis spectra, thermal properties and structural characterizations

Three thiophene-2,5-dicarboxylic acid (H₂tdc) complexes of copper(II) with 2-aminomethylpyridine (ampy), {[Cu₂(μ-tdc)₂(ampy)₂]·2DMF}_n (1), ethylenediamine (en), trans-[Cu(H₂O)₂(en)₂](tdc) (2) and 4-methylimidazole (4-meim), trans-[Cu(H₂O)₂(4-meim)₄](tdc)·4H₂O (3) have been synthesized and characterized by spectral (IR, UV–Vis), thermal analyses and X-ray diffraction techniques. In 1, thiophene-2,5-dicarboxylate acts as a bridging bis(bidentate) ligand through four carboxylate oxygen atoms forming a 1-D zigzag polymeric chain, whereas in 2 and 3 the tdc dianion behaves as a counter ion. In all cases, the Cu(II) centers have an octahedral coordination geometry. Three-dimensional frameworks are constructed though hydrogen bonding and/or C–H···π interactions in the three complexes.     

Synthesis,crystal structure and magnetic property of a one-dimensional copper(II) complex with 2,5-dimethylpyrazine-1,4-dioxide as bridging ligand

A one-dimensional polynuclear copper(II) complex [Cu(μ_1,6-dmpzdo)(SCN)₂] _n (where dmpzdo?=?2,5-dimethylpyrazine-1,4-dioxide) has been synthesized and its crystal structure determined by X-ray crystallography. The coordination geometry of Cu(II) atom is a square plane and each Cu(II) ion is connected by two μ_1,6-dmpzdo bridging ligands, leading to the formation of a one-dimensional chain. ESR spectra indicate magnetic coupling between the bridged Cu(II) ions. The fitting of the variable-temperature magnetic susceptibility data (4–300?K) gave 2J?=??68.69?cm^?1.     

Synthesis,crystal structure,and magnetic properties of 1D Azido-bridged copper(II) complex

A novel copper(II)-azide complex of [Cu₂(DMAP)₂(μ-1,1-N₃)₂(μ-1,3-N₃)₂]_n (DMAP = 4-(dimethylamino)pyridine) has been synthesized and characterized by IR spectra, X-ray diffraction, elemental analysis, and magnetism measurement. The complex reveals a 1D ladder-like chain structure, in which two μ-1,1-N₃ and two μ-1,3-N₃ bridges form a dimeric unit of [Cu₂(DMAP)₂(μ-1,1-N₃)₂(μ-1,3-N₃)₂] and are then connected to each other from the tail nitrogens of two asymmetric μ-1,3-N₃ bridges to generate a chain structure that stacks in the cell to construct the 3D crystal. The Cu atom is five-coordinated by azide anions to form a distorted square-pyramid of CuN₅ (τ = 0.2667). Magnetic susceptibility of complex exhibits a ferromagnetic interaction between the copper(II) ions through two kinds of azido-bridges. Electronic supplementary material The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

Copper(II) complexes of N(4)-substituted thiosemicarbazones derived from pyridine-2-carbaldehyde: Crystal structure of a binuclear complex

Ten copper(II) complexes {[CuL¹Cl] (1), [CuL¹NO₃]₂ (2), [CuL¹N₃]₂ · 2/3H₂O (3), [CuL¹]₂(ClO₄)₂ · 2H₂O (4), [CuL²Cl]₂ (5), [CuL²N₃] (6), [Cu(HL²)SO₄]₂ · 4H₂O (7), [Cu(HL²)₂] (ClO₄)₂ · 1/2EtOH (8), [CuL³Cl]₂ (9), [CuL³NCS] · 1/2H₂O (10)} of three NNS donor thiosemicarbazone ligands {pyridine-2-carbaldehyde-N(4)-p-methoxyphenyl thiosemicarbazone [HL¹], pyridine-2-carbaldehyde-N(4)-2-phenethyl thiosemicarbazone [HL²] and pyridine-2-carbaldehyde N(4)-(methyl), N(4)-(phenyl) thiosemicarbazone [HL³]} were synthesized and physico-chemically characterized. The crystal structure of compound 9 has been determined by X-ray diffraction studies and is found that the dimer consists of two square pyramidal Cu(II) centers linked by two chlorine atoms.