Copper(II) complex with 6-(3,5-dimethyl-1H-pyrazol-1-yl)-2-(pyridin-2-yl)pyrimidin-4-amine: synthesis,crystal structure,and electronic spectroscopy

A copper(II) complex with 6-(3,5-dimethyl-1H-pyrazol-1-yl)-2-(pyridin-2-yl)pyrimidin-4-amine (L), [CuLCl₂], has been synthesized. This compound is formed irrespective of the Cu?:?L molar ratio (Cu?:?L?=?1?:?1, 2?:?1, and 20?:?1) in the MeOH/H₂O/DMF mixture as a single product. ESI-MS data demonstrate that the additional amount of CuCl₂ above the Cu?:?L?=?1?:?1 molar ratio, is effectively solvated, and high-nuclearity species are formed in trace amounts in the solution. The complex adopts a distorted square-pyramidal geometry with two chlorides and three nitrogen atoms from L. The electronic spectrum of the complex contains a broad band with a maximum at 12,820?cm^?1 within the region characteristic for square-pyramidal chromophores CuA₅ (A?=?Cl, N). Due to Cu?···?Cl contacts, the molecules of [CuLCl₂] form the dinuclear [CuLCl₂]₂ unit. Surprisingly, the NH₂-group participates in the formation of NH?···?Cl hydrogen bonds instead of the formation of (NH?···?N3_(pyrimidine))₂ synthon, which is common for N-heteroaromatic compounds containing the NH₂-group in the α-position to aza-atom. These hydrogen bonds together with Cu?···?Cl contacts result in the formation of a 3-D-structure.     

Oxidative condensation reactions of (diethylenetriamine)cobalt(III) complexes with substituted bis(pyridin-2-yl)methane ligands

The synthesis and characterisation of Co(III) complexes derived from a condensation reaction with a central or terminal nitrogen of a dien ligand and the -carbon of a range of substituted bis(pyridin-2-yl)methane ligands are described. Aerial oxidation of bpm {bis(pyridin-2-yl)methane with Co(II)/dien or direct reaction with Co(dien)Cl₃ provided in low yield a single C–N condensation product 1 (at the primary terminal NH₂) after the pyridyl –CH₂– is formally oxidised to –CH⁺–. The methyl substituted ligand bpe {1,1-bis(pyridin-2-yl)ethane} behaves likewise, except both terminal (prim) and central (sec) amines condense to yield isomeric products 2 and 3. Two of these three materials have been characterised by single crystal X-ray crystallography. The corresponding reactions for the bis(pyridyl) ligand bpk {bis(pyridin-2-yl)ketone} provided C–N condensation products without the requirement for oxidation at the -C center; two carbinolamine complexes in different geometrical configurations resulted, mer-anti-[Co(dienbpc)Cl]ZnCl₄, 5, and unsym-fac-[Co(dienbpc)Cl]ZnCl₄, 6, {dienbpc=[2-(2-aminoethylamino)-ethylamino]-di-pyridin-2-yl-methanol}. In addition, a novel complex, [Co(bpk)(bpd-OH)Cl]ZnCl₄, 4, in which one bidentate N, N-bonded bpk ligand and one tridentate N, O, N-bonded bpd (the diol from bpk+OH⁻) were coordinated, was obtained via the Co(II)/O₂ synthetic route. When the bpc ligand (bpc=bis(pyridin-2-yl)methanol) was employed directly as a reagent along with dien, no condensation reactions were observed, but rather a single isomeric complex [Co(dien)(bpc)]Cl.ZnCl₄, 7, in which the ligand bpc acted as a N,N,O-bonded tridentate ligand rather than as a N,N-bidentate ligand was isolated. ¹³C, 1D and 2D ¹H NMR studies are reported for all the complexes; they establish the structures unambiguously.     

Copper(I) and copper(II) complexes with pyrazine-containing pyridylalkylamide ligands N-(pyridin-2-ylmethyl)pyrazine-2-carboxamide and N-(2-(pyridin-2-yl)ethyl)pyrazine-2-carboxamide

Four copper(II) complexes and one copper(I) complex with pyridine-containing pyridylalkylamide ligands N-(pyridin-2-ylmethyl)pyrazine-2-carboxamide (HL^pz) and N-(2-(pyridin-2-yl)ethyl)pyrazine-2-carboxamide (HL^pz?) were synthesized and characterized. The X-ray crystal structures of [Cu₂(L^pz)₂(4,4?-bipy)(OTf)₂] (1, OTf?=?trifluoromethanesulfonate, 4,4?-bipy?=?4,4?-bipyridine) and [Cu(L^pz)(py)₂]OTf·H₂O (2, py?=?pyridine) revealed binuclear and mononuclear molecular species, respectively, while [Cu(L^pz)(μ₂-1,1-N₃)]_n (3), [Cu(L^pz?)(μ₂-1,3-N₃)]_n (4), and [Cu(HL^pz)Cl]_n (5) are coordination polymer 1-D chains in the solid state.     

Polynuclear Cu(II), Ni(II) and Cd(II) coordination compounds with bis(pyrimidin-2-yl)amine and dicyanamide

In this study the synthesis, crystal structure and characterization of three new transition metal polynuclear compounds with formula [Cu(dipm)(μ-dca)₂]_n(H₂O) (1), [Ni(dipm)(μ-dca)₂]_n(C₂H₆O)_1/2 (2) and [Cd(dipm)(μ-dca)₂]_n (3) (in which dipm = bis(pyrimidin-2-yl)amine and dca = dicyanamide) are reported. The isostructural compounds 1 and 2 contain a double-bridging end-to-end dca unit connecting two metal ions and a single bridging end-to-end dca unit between subsequent metals. Compound 3 exhibits only single bridging end-to-end dca units, oriented in three directions, giving rise to a 3D framework.     

A ring-like coordination structure constructed by Cu(II) and bis(2-(pyridin-2-ylthio)ethyl)ether ligand

The reaction of bis(2-(pyridin-2-ylthio)ethyl)ether (L) with CuCl₂ in CH₃OH/CHCl₃ solution gives a novel 24-membered ring-like coordination structure which has been characterized by elemental analysis, IR, and X-ray single-crystal diffraction. The X-ray diffraction analysis reveals that [Cu₂L₂Cl₄] crystallizes in the triclinic, space group $P\bar 1$ . The ring-like structure is consisted of two ligands with two copper ions coordinated to the pyridyl nitrogen atoms from two ligands respectively. The largest diameters of the planarshaped dinuclear ring are about 12.7 Å. The adjacent ring-like units are linked via C-H…O hydrogen bonds to generate an infinite linear chain, which are further linked by C-H…Cl hydrogen bonds and weak intermolecular interactions to form a three-dimensional network.     

Copper(II) complexes of bis(pyrazol-1-yl)methane - Synthesis, spectroscopic characterization, X-ray structure and DFT calculations

Two novel copper(II) complexes incorporating bis(pyrazol-1-yl)methane ligand (bpzm) have been synthesized. The compounds [CuCl(bpzm)₂(H₂O)]Cl·H₂O (1) and [Cu(N₃)₂(bpzm)]_n (2) have been studied by IR, UV-Vis spectroscopy and X-ray crystallography. The experimental studies on the compounds 1 and 2 have been accompanied computationally by the density functional theory (DFT) calculations.     

Synthesis and structural investigation of mono- and polynuclear copper complexes of 4-ethyl-1-(pyridin-2-yl) thiosemicarbazide

The reaction between 2-hydrazinopyridine and ethylisothiocyanate produced 4-ethyl-1-(pyridin-2-yl) thiosemicarbazide (HEPTS). Its reaction with copper fluoride, chloride, bromide, acetate, nitrate, perchlorate, sulfate, carbonate, hydroxide and copper metal produced 15 Cu(II) complexes. The copper metal is easily oxidized in aqueous-ethanol solution of HEPTS giving [Cu(2)(EPTS)(H(2)O)(3)(OH)(3)]EtOH. Different complexes for the same anion were synthesized by controlling the heating time. Characterization by elemental, thermal, magnetic and spectral (electronic, IR, mass and ESR) studies showed the formation of mono-, di-, tri- and tetra nuclear complexes. The room temperature solid state ESR spectra of the complexes show an axial spectrum with d(x)(2)-y(2) ground state, suggesting distorted tetragonal geometry around Cu(II) center. The kinetic and thermodynamic parameters for the different decomposition steps in the complexes were calculated. HEPTS and its Cu(II) complexes showed high activity against gram negative bacteria; [Cu(3)(EPTS)(2)(EtOH)(2)Br(4)] has more activity.     

Crystal Structure and Theoretical Energy Gap of 2-(2-((4-(Pyridin-2-yl)pyrimidin-2-yl)disulfanyl)pyrimidin-4-yl) pyridinium Hexafluorophosphate

The crystal structure of 2-(2-((4-(pyridin-2-yl)pyrimidin-2-yl)disulfanyl)pyrimidin-4-yl)pyridinium hexafluorophosphate was obtained by X-ray single-crystal diffraction. This molecule crystallizes in monoclinic P2/c space group with a=6.219(1), b=13.103(2), c=13.059(2) ?, β=97.567(2)°, Z=2, the final R=0.0525 and w R=0.1434. The title compound was prepared successfully from 1,2-bis(4-(pyridin-3-yl)pyrimidin-2-yl)disulfane(BPPD). TD-DFT computational studies on energy gaps and UV-Vis spectra of BPPD and the title compound have been carried out for comparisons. The resultant HOMO-LUMO gap of the BPPD compound is 4.45 e V, while that for the corresponding hexafluorophosphate salt is much smaller at 2.46 e V, which are in agreement with their UV-Vis absorptions.     

Synthesis of 2-(pyrimidin-4-yl)indoles

The synthesis of 2-substituted isomers of the meridianins, a familiy of bioactive indole alkaloids isolated from the tunicate Aplidium meridianum, was undertaken. The synthetic route comprises six steps, with a microwave promoted Fischer cyclization as the key reaction.     

Copper-catalyzed intramolecular redox reaction: Asymmetric synthesis of chiral 2-(1H-pyrrol-1-yl)-mandelic acid esters

An efficient approach to chiral α-hydroxy acid esters by Lewis acid-mediated asymmetric [1,5]-hydride shift and isomerization of 2-(3-pyrroline-1-yl)arylketone acid ester has been achieved in up to 96% yield and 94% ee. This protocol would be applied in the synthesis of chiral α-hydroxy acid derivatives with simplicity and high enantioselectivity.     

Copper(II) complexes of 2-(pyridine-2-yl)imidazolidine-4-thione derivatives for asymmetric Henry reactions

The preparation of a new series of 2-(pyridine-2-yl)imidazolidine-4-thione derivatives is described. Their corresponding copper(II) complexes were found to be highly enantioselective catalysts for asymmetric Henry reactions (up to 98% ee). Immobilization of these complexes by anchoring onto Merrifield? resin with respect to their use as recyclable catalysts was subsequently performed. The heterogeneous catalysts prepared in this way were tested in the asymmetric Henry reactions and showed high catalytic activity; they can be easily recycled, although their enantioselectivities were only moderate (～50% ee).     

Synthesis,structural characterization,molecular docking,and urease inhibition studies of dinuclear cobalt(II) complexes derived from 3,5-bis(pyridin-2-yl)-4-amino-1,2,4-triazole

Two dinuclear Co(II) complexes, [Co₂(L)₂(EtOH)₄]·4ClO₄ (1) and [Co₂(L)₂(H₂O)₂(NO₃)₂]·2NO₃ (2) (L?=?4-amino-3,5-bis(pyridin-2-yl)-1,2,4-triazole), have been obtained and characterized by IR, elemental analysis, and single-crystal X-ray diffraction analysis. The stabilization of their crystal lattices is maintained by strong H-bonds between counterions and host framework, which lead to various supramolecular architectures. The urease inhibitory properties of 1, 2, and L were investigated, where the two complexes revealed strong urease inhibition activities. Docking simulations of 2 have been performed with H. pylori urease (PDB code: 1E9Z) to rationalize their binding models.     

Copper(II) complexes with 1,2,4-triazolo[1,5-a] pyrimidine and its 5,7-dimethyl derivative

Several Cu(II) complexes with 1,2,4-triazolo[1,5-a]pyrimidine (tp) and its 5,7-dimethyl derivative (dmtp) have been isolated and structurally characterized. Five of them are mononuclear and contain 1,10-phenanthroline (phen) or ethylenediamine (en) as auxiliary ligands, their formula being [Cu(H₂O)(phen)(tp)₂](ClO₄)₂ · H₂O, [Cu(H₂O)(phen)(dmtp)₂](ClO₄)₂, [Cu(NO₃)(H₂O)(phen)(tp)](NO₃), [Cu(H₂O)₂(en)(tp)₂](ClO₄)₂ and [Cu(H₂O)₂(en)(dmtp)₂](ClO₄)₂. In all these compounds the tp or dmtp ligand is monodentately coordinated via the nitrogen atom in position 3. The auxiliary ligand influences the coordination number, which is five when this ligand is phen and six when it is en whereas the number of triazolopyrimidine ligands linked to the metal seems to be influenced by the nature of the counteranion. A dinuclear compound with tp has also been isolated, its formula being [Cu₂(OH)(H₂O)_2.5(tp)₅](ClO₄)₃·(H₂O)_1.5, with both metal atoms linked by an hydroxydo group and by a tp bridging ligand, coordinated to one of the copper atoms via N3 and to the other via N4. This compound has several unusual features among the metal complexes with triazolopyrimidine derivatives: the presence of two different kinds of bridging moieties, the coexistence of bridging and terminal ligands and the formation of a N3–N4 bridge for a Cu(II) dinuclear compound for a derivative without exocyclic oxygen atoms.     

Highly enantioselective nitroaldol reactions catalyzed by copper(II) complexes derived from substituted 2-(pyridin-2-yl)imidazolidin-4-one ligands

Ten optically pure substituted 2-(pyridin-2-yl)imidazolidin-4-ones, 1a-d, 2a-4a, and 2b-4b, were prepared and characterized. The absolute configurations of individual ligands were determined by X-ray analysis or NOESY experiments. The Cu(II) complexes of the respective ligands were studied as enantioselective catalysts of the nitroaldol (Henry) reaction of aldehydes with nitromethane, giving the corresponding substituted 2-nitroalkanols. In the case of an anti arrangement of the imidazolidin-4-one ring, the obtained result was 91-96% ee, whereas in the case of syn arrangement, a significant drop to 25-27% ee was observed.     

New copper(II) coordination compounds with 1,3-bis(5-(pyridin-2-yl)-1,2,4-triazol-3-yl)propane

Two new copper(II) complexes with 1,3-bis(5-(pyridin-2-yl)-1,2,4-triazol-3-yl)propane (H₂L), [Cu₂(HL)Cl₃] · H₂O (I) and [Cu(H₂L)](ClO₄)₂ (II), were described. The compounds were characterized by elemental analysis, IR spectroscopy, and magnetochemical data. According to X-ray diffraction data (CIF files CCDC nos. 1497511 (I), 1497512 (II)), complex I is binuclear and the metal cations are bound by the nitrogen atoms of the triazole ring and by the chloride anion. Complex II is mononuclear. Analysis of the temperature dependence of the magnetic susceptibility of I attests to the antiferromagnetic coupling of paramagnetic centers (–2J = 18 cm^–1). Exchange channels are analyzed by means of density functional theory (B3LYP/6-311G(d)) using the broken symmetry approach.     

新的吡啶基硫醚苯甲酸的原位合成及其铜配合物

在氧化铜和溴化铜存在的条件下, 4-[1,2-(2-吡啶基)亚甲硫基]-苯甲酸(L′)经原位消去反应, 形成了一个新的有机配体4-[1,2,2-(2-吡啶基)-(2-吡啶亚甲基)亚甲硫基]-苯甲酸(L), 并与铜形成配位聚合物[Cu₂(L)Br₂]_n(1){L=4-[1,2,2-(2-吡啶基)-(2-吡啶亚甲基)亚甲硫基]-苯甲酸}, 通过红外光谱、元素分析和X射线单晶衍射等手段对其结构进行了表征.     

Reactions of metal carbonyl cluster complexes with multidentate phosphine ligands; reactions with bis(diphenylphosphino)methane

Reactions of Rh₆(CO)₁₆ with bis(diphenylphosphino)methane (dppm) gave Rh₆(CO)₁₄(dppm), Rh₆(CO)₁₂(dppm)₂, or Rh₆(CO)₁₀(dppm)₃, depending upon the reaction conditions. Rh₄(CO)₁₀(dppm) may be obtained from the reaction of Rh₄(CO)₁₂ with dppm, but this derivative rapidly decomposes in solution to give Rh₄(CO)₈(dppm)₂, Rh₆(CO)₁₄(dppm), and Rh₆(CO)₁₂(dppm)₂. Ir₄(CO)₁₀(dppm) and Ir₄(CO)₈(dppm)₂ have also been prepared, and their structures are discussed on the basis of infrared and ³¹P NMR spectroscopic data.