Computer-assisted structure elucidation of organic compounds III: Automatic fragment generation from13C-NMR spectra

The interpretation of carbon-NMR spectra is mainly based on the comparison with suitable reference data taken from literature. The whole information contents of¹³C-NMR spectra cannot be utilized by manual interpretation. Therefore a network of interactive computer programs has been developed, which simulates the strategy of the spectroscopist in generating structural fragments from the spectral data. The most important knowledge source for this process is a carbon-NMR data base containing some 17,500 spectra. Structural fragments are generated automatically from this data file and assembled by a model builder to complete chemical structures using constraints derived from the spectral data. A comparison of the experimental carbon-NMR spectrum with the estimated ones allows the generation of a sorted hitlist.For part II see: H. Kalchhauser, W. Robien,J. Chem. Inf. Comput. Sci. 1985,25, 103.     

Polymerization of Bis(Pyridine)bis-(2,4,6-tribromophenoxo)copper(II) Complex (Py2Cu(TBrP)2) by Electrooxidation and Structural Characterization by 1H-NMR, 13C-NMR,and FTIR Spectroscopies

Abstract

Electroinitiated polymerization of bis(2,4,6-tribromophenoxo)- bis(pyridine)copper(II) complex was achieved in dimethylformamide-tetrabutylammonium tetrafluoroborate solvent-electrolyte couple under air or nitrogen at room temperature by constant potential electrolysis. Polymerization conditions were based on the peak potentials measured by cyclic voltammetry. The structural analyses of the polymers were done by ¹H-NMR, ¹³C-NMR, and FTIR spectral analyses along with molecular weight measurements by cryoscopy. The poly(dibromo phenylene oxide)s obtained only at oxidation potentials in either atmosphere were found to be highly linear, indicating mainly 1,4-catenation was taking place.     

Synthesis, spectroscopic, structural and theoretical characterization of hydrogensquarate and mononuclear Au(III)-complex of dipeptide phenylalanyltyrosine

The mononuclear Au(III)-complex ([Au(C₁₈H₁₈N₂O₄)Cl]) and hydrogensquarate ([C₂₂H₂₁N₂O₈]) of dipeptide phenylalanyltyrosine (H–Phe–Tyr–OH) have been synthezised, characterized spectroscopically and structurally by means of solid-state linear-polarized IR-spectroscopy, ¹H- and ¹³C-NMR, ESI-MS, HPLC-MS–MS, FAB-MS, TGS and DSC methods. The structure of the Au(III)-complex has been predicted theoretically by DFT calculations. The dipeptide coordinated in a tridentate manner via –NH₂, –COO⁻ and N⁻-groups. One Cl⁻ ion is attached to the metal centre as a terminal ligand, yielding a planar AuN₂OCl chromophor. The hydrogensquarate consists in positive charged dipeptide moiety and negative one hydrogensquarate (HSq⁻) anion stabilizing by strong intermolecular hydrogen bonds.     

New Au(III), Pt(II) and Pd(II) complexes with glycyl-containing homopeptides

Twelve new Au(III), Pt(II) and Pd(II) complexes with glycyl-containing homopeptides glycyl-glycine (G2), glycyl-glycyl-glycine (G3), glycyl-glycyl-gycyl-glycine (G4), glycyl-glycyl-glycyl-glycyl-glycine (G5) and glycyl-glycyl-glycyl-glycyl-glycyl-glycine (G6) have been synthesized, isolated and characterized spectroscopically and structurally by means of solid-state linear-dichroic infrared (IR-LD) spectroscopy of oriented colloids in nematic liquid crystal host, ¹H- and ¹³C-NMR, TGA and DSC, UV–Vis spectroscopy, EPR, ESI- and FAB mass spectrometry and HPLC tandem mass spectrometry (HPLC-MS/MS). Quantum chemical calculations are carried out with a view to obtain the structures and spectroscopic properties of the ligand and newly synthesized metal complexes.     

Potentiometric and spectral studies of complex formation of La(III), Pr(III) and Lu(III) with aspartic acid and asparagine

The composition and stability of La³⁺, Pr³⁺ and Lu³⁺ complexes with aspartic acid and asparagine were analysed. The formation of complexes of the typeML andMHL was determined for La³⁺ and Pr³⁺ with aspartic acid, and of the typeMHL for Lu³⁺ with aspartic acid. For La³⁺, Pr³⁺ and Lu³⁺ with asparagine the formation ofML(OH) complexes was observed. By means of¹H NMR and¹³C NMR studies the participation in the coordination of both -COOH groups was determined for aspartic acid, whereas for asparagine the participation of the -COOH group was determined in complexes with La³⁺, Pr³⁺, and of the -COOH and the -NH₂ groups in the complex with Lu³⁺.

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Potentiometrische und spektroskopische Untersuchungen an La(III), Pr(III) und Lu(III)-Komplexen von Asparaginsäure und Asparagin

Zusammenfassung Die Zusammensetzung und die Stabilität von La³⁺, Pr³⁺ und Lu³⁺-Komplexen mit Asparaginsäure und Asparagin wurden untersucht. Es wurde die Bildung von La³⁺ und Pr³⁺-Komplexen des TypsML undMHL, und ein Lu³⁺-Komplex des TypsMHL mit Asparaginsäure festgestellt. Für diese drei Lanthaniden wurde auch die Bildung von Komplexen des TypsML(OH) mit Asparagin beobachtet. Mit Hilfe von¹H-NMR und¹³C-NMR-Untersuchungen wurde für Asparaginsäure die Teilnahme der beiden -COOH-Gruppen, für Asparagin die Teilnahme der -COOH-Gruppe in den Komplexen mit La³⁺, Pr³⁺ und der-COOH und -NH₂-Gruppen in dem Komplex mit Lu³⁺ an der Koordinierung festgestellt.

     

Linear-dichroic infrared and NMR spectroscopic analysis of an Au(III) complex of glycylmethioninylglycine

A solid state, linear dichroic IR analysis of a mononuclear Au(III) complex of the tripeptide glycylmethioninylglycine (GlyMetGly) oriented in a nematic liquid crystal has been carried out. Structural results are compared with ¹H and ¹³C NMR data. The ligand coordinates to Au(III) as a tridentate in [Au(C₉H₁₇N₃O₄S)Cl]Cl₂, binding through S, and the N- and O-atoms of neighbouring CONH– and COO^? groups. The fourth position is occupied by a terminal Cl^? ligand.     

H-, C-NMR and ethylene polymerization studies of zirconocene/MAO catalysts: effect of the ligand structure on the formation of active intermediates and polymerization kinetics

Using ¹H- and ¹³C-NMR spectroscopies, cationic intermediates formed by activation of L₂ZrCl₂ with methylaluminoxane (MAO) in toluene were monitored at Al/Zr ratios from 50 to 1000 (L₂ are various cyclopentadienyl (Cp), indenyl (Ind) and fluorenyl (Flu) ligands). The following catalysts were studied: (Cp-R)₂ZrCl₂ (R=Me, 1,2-Me₂, 1,2,3-Me₃, 1,2,4-Me₃, Me₄, Me₅, n-Bu, t-Bu), rac-ethanediyl(Ind)₂ZrCl₂, rac-Me₂Si(Ind)₂ZrCl₂, rac-Me₂Si(1-Ind-2-Me)₂ZrCl₂, rac-ethanediyl(1-Ind-4,5,6,7-H₄)₂ZrCl₂, (Ind-2-Me)₂ZrCl₂, Me₂C(Cp)(Flu)ZrCl₂, Me₂C(Cp-3-Me)(Flu)ZrCl₂ and Me₂Si(Flu)₂ZrCl₂. Correlations between spectroscopic and ethene polymerization data for catalysts (Cp-R)₂ZrCl₂/MAO (R=H, Me, 1,2-Me₂, 1,2,3-Me₃, 1,2,4-Me₃, Me₄, Me₅, n-Bu, t-Bu) and rac-Me₂Si(Ind)₂ZrCl₂ were established. The catalysts (Cp-R)₂ZrCl₂/AlMe₃/CPh₃⁺B(C₆F₅)₄⁻ (R=Me, 1,2-Me₂, 1,2,3-Me₃, 1,2,4-Me₃, Me₄, n-Bu, t-Bu) were also studied for comparison of spectroscopic and polymerization data with MAO-based systems. Complexes of type (Cp-R)₂ZrMe⁺←Me⁻-Al≡MAO (IV) with different [Me-MAO]⁻ counteranions have been identified in the (Cp-R)₂ZrCl₂/MAO (R=n-Bu, t-Bu) systems at low Al/Zr ratios (50-200). At Al/Zr ratios of 500-1000, the complex [L₂Zr(μ-Me)₂AlMe₂]⁺[Me-MAO]⁻ (III) dominates in all MAO-based reaction systems studied. Ethene polymerization activity strongly depends on the Al/Zr ratio (Al/Zr=200-1000) for the systems (Cp-R)₂ZrCl₂/MAO (R=H, Me, n-Bu, t-Bu), while it is virtually constant in the same range of Al/Zr ratios for the catalytic systems (Cp-R)₂ZrCl₂/MAO (R=1,2-Me₂, 1,2,3-Me₃, 1,2,4-Me₃, Me₄) and rac-Me₂Si(Ind)₂ZrCl₂/MAO. The data obtained are interpreted on assumption that complex III is the main precursor of the active centers of polymerization in MAO-based systems.     

A Study of N-Butyl-(all-trans-retinylidene)amine and Its Protonated Species by 1H- and 13C-NMR. Spectroscopy

The Schiff base of all-trans-retinal was investigated in organic solution by ¹H- and ¹³C-NMR. at high field. Complete assignment of the ¹H-NMR. peaks of N-butyl-(all-trans-retinylidene)amine ( 2 ) and the N-butyl-(all-trans-retinylidene)-ammonium ion ( 3 ) was achieved by INDOR (internuclear double resonance). The vicinal proton coupling constants of the polyene chain show that the π-bond orders remain unchanged in N-butyl-(all-trans-retinylidene)amine relative to all-trans-retinal ( 1 ), but change towards larger π-delocalization in the N-butyl-(all-trans-retinylidene)ammonium ion. At ?-61° only one isomer of N-butyl-(all-trans-retinylidene)ammonium was observed. This was shown to be trans at the imine linkage and independent of the solvent. The trifluoroacetic acid counter-ion can approach the positive charge of the N-atom in the weakly polar solvent dichloromethane but not in the leveling solvent methanol. In dichloromethane the nature of the 1:1 complex is a H-bonded (O^?…H-N⁺) ion-pair whose rate of breaking and forming is rapid at RT. Strong stabilization of the ion-pair resulted from homo-conjugation with a second molecule of trifluoroacetic acid. Excess of acid efficiently diminished the isomerization rate at the C,N-bond.     

Pd(II) and Au(III) complexes of some 4-glycopyranosylamino-5-nitroso-6-oxo-pyrimidine derivatives

Six Pd(II) and Au(III) complexes of 4-glycopyranosylamino-5-nitroso-6-oxo-pyrimidine derivatives were prepared. On the basis of their¹H-NMR and IR spectra, it has been found that the coordination sites are the 5-nitroso and the 6-oxo substituents. Likewise, the thermal behaviour of the complexes has also been studied.

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Komplexe des Pd(II) und Au(III) mit einigen Derivaten des 4-Glycopyranosylamino-5-nitroso-6-oxo-pyrimidins

Zusammenfassung Sechs Pd(II)- und Au(III)-Komplexe mit 4-Glycopyranosylamino-5-nitroso-6-oxo-pyrimidin-Derivaten wurden hergestellt. Auf der Basis ihrer¹H-NMR und IR-Spektren wurde herausgefunden, daß die Substituenten 5-nitroso und 6-oxo die Koordinationsstellen sind. Das thermische Verhalten der Komplexe wurde ebenfalls untersucht.

     

Synthesis and structural characterization of a new polymeric zinc(II) complex with thiophene-2-carboxylic acid

A new polymeric zinc(II) complex with thiophene-2-carboxylic acid (α-tpc) of composition [Zn₂(C₂₀H₁₂O₈S₄)] _n was obtained and structurally characterized by X-ray diffraction, thermal analysis, nuclear magnetic resonance (NMR), and infrared spectroscopies. Upfield shift in the ¹H-NMR spectrum is explained by the crystalline structure, which shows the thiophene rings overlapping each other in parallel pairs. The compound crystallizes in the monoclinic system, space group P2₁/c, with a = 9.7074(4) Å, b = 13.5227(3) Å, c = 18.9735(7) Å, β = 95.797(10)°, and Z = 4. Three α-tpc groups bridge between two Zn(II) ions through oxygens and the fourth one bridges between one of these ions and the third one, symmetry related by a twofold screw axis. This arrangement gives rise to infinite chains along the crystallographic a direction. The metal atoms display an approximate tetrahedral configuration. The complex is insoluble in water, ethanol, and acetone, but soluble in dimethyl sulfoxide.     

Dimethylthallium(III) complexes with picolinic acid and its hydroxyl derivatives

The reaction of dimethylthallium(III) hydroxide with picolinic acid (Hpic), 3-hydroxypicolinic acid (H₂3hpic) and 6-hydroxypicolinic acid (H₂6hpic) in an aqueous/methanol mixture afforded the complexes [TlMe₂(pic)] (1), [TlMe₂(H3hpic)] (2) and [TlMe₂(H6hpic)] (3), respectively. Complex 3′, [NaTlMe₂(6hpic)₂]_n, was obtained as a minor product from a methanolic solution of 3. Compounds 1–3 were characterized by IR and Raman spectroscopy and, in the cases of 1, 2 and 3′, by single-crystal X-ray diffraction. Complex 3′ is the first example of an H6hpic⁻ heterobimetallic compound to be isolated. The ¹H and ¹³C NMR spectra of 1 and 2 are also discussed.     

Bis(Diethyldithiocarbamato)Antimony(III) Derivatives with Oxygen- and Sulfur-Donor Ligands: Synthesis,Esi-Mass,and Spectral Characterization

Abstract

Replacement reactions of bis(diethyldithiocarbamato)antimony(III) chloride have been carried out with oxygen and sulfur donor ligands such as disodium oxalate, sodium acetate, sodium salicylate, benzoic acid, thioglycolic acid, acetylacetone, thiphenol, ethane-1,2-dithiol, and 2,2-dimethylpropane-1,3-diol to give mixed bis(diethyldithiocarbamato)antimony(III) derivatives of the corresponding ligands. These derivatives have been characterized by the physicochemical [melting point and molecular weight determination, elemental analysis (C, H, N, S, and Sb)], spectral [FT-IR, far-IR, NMR (¹H and ¹³C)], ESI-mass, powder XRD, and SEM studies.

[Supplementary materials are available for this article. Go to the publisher's online edition of Phosphorus, Sulfur, and Silicon and the Related Elements for the following free supplemental files: Additional figures and tables]     

Synthesis of partially saturated N-substituted 4H-3,1-benzothiazine-2(1H)-thiones

Summary Acid-catalyzed reaction of 2-arylidenecyclohexanones1 with N-substituted dithiocarbamic acids2 gave open-chain addition products3 and4. Dehydration of3 and4 afforded only one of the three possible isomeric N-substituted 4H-3,1-benzothiazine-2(1H)-thiones5 and6.

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Synthese von partiell gesättigten N-substituierten 4H-3,1-Benzothiazin-2-(1H)-thionen

Zusammenfassung Die säurekatalysierte Reaktion von 2-Arylidencyclohexanonen1 mit N-substituierten Dithiocarbaminsäure2 ergab die offenkettigen Additionsprodukte3 und4. Die Dehydratation von3 und4 führte ausschließlich zu einem der drei möglichen N-substituierten 4H-3,1-Benzothiazin-2(1H)-thion-Isomeren5 und6.

     

Computational Studies of Au(I) and Au(III) Anticancer MetalLodrugs: A Survey

Owing to the growing hardware capabilities and the enhancing efficacy of computational methodologies, computational chemistry approaches have constantly become more important in the development of novel anticancer metallodrugs. Besides traditional Pt-based drugs, inorganic and organometallic complexes of other transition metals are showing increasing potential in the treatment of cancer. Among them, Au(I)- and Au(III)-based compounds are promising candidates due to the strong affinity of Au(I) cations to cysteine and selenocysteine side chains of the protein residues and to Au(III) complexes being more labile and prone to the reduction to either Au(I) or Au(0) in the physiological milieu. A correct prediction of metal complexes’ properties and of their bonding interactions with potential ligands requires QM computations, usually at the ab initio or DFT level. However, MM, MD, and docking approaches can also give useful information on their binding site on large biomolecular targets, such as proteins or DNA, provided a careful parametrization of the metal force field is employed. In this review, we provide an overview of the recent computational studies of Au(I) and Au(III) antitumor compounds and of their interactions with biomolecular targets, such as sulfur- and selenium-containing enzymes, like glutathione reductases, glutathione peroxidase, glutathione-S-transferase, cysteine protease, thioredoxin reductase and poly (ADP-ribose) polymerase 1.     

Study on sequence distribution of segmented poly(urethane urea)s by 13C-NMR spectroscopy: Effect of polymerization procedures

The segmented poly(urethane urea) copolymers were synthesized by one- and two-step polymerization procedures. The copolymers were based on 4,4′-diphenylmethane diisocyanate, 3,5-diethyltoluene diamine, and ethylene oxide-capped poly(propylene oxide) diol. The mean sequence lengths of polyurethane soft block and polyurea hard block as well as the sequence distribution of the hard block in the copolymers were estimated from the signals of aromatic carbons in ¹³C-NMR spectra. The results indicated that two-step polymerization led to longer mean sequence lengths and broader hard block sequence distribution than one-step polymerization did. © 1996 John Wiley & Sons, Inc.     

Selective extraction and determination of Au(III) by first-derivative spectrophotometry

The selective extraction of Au(III) in the presence of Zn(II) by salting-out of 2-propanol was investigated. The salting-out effect increased partitioning between water and 2-propanol in the presence of sodium chloride in aqueous–organic mixtures. This is observed through the distribution coefficient, which increases with salt addition. First-derivative spectrophotometry, which eliminates interference from overlapping spectral bands, was used for the determination of trace Au(III) in the presence of Zn(II). Absorption spectra were recorded and the first-derivative spectra were obtained using Δλ?=?10?nm. The calibration graph was linear for 0.857–5.142?µg?mL^?1 and the detection limit was 0.038–8?µg?mL^?1. The proposed method has been successfully applied to the determination of trace Au(III) in synthetic mixtures and Algerian low gold ore solutions. The results agree with those obtained by atomic absorption spectroscopy and the recoveries were >98%. The relative standard deviations were in all instances less than 3%.     

电镀铂/金的金电极上As(Ⅲ)电化学行为的电化学石英晶体微天平研究

采用电化学石英晶体微天平(EQCM)技术研究了Britton-Robinson(B-R,pH=1.8～11.2)缓冲溶液和H2SO4介质中电镀铂淦的金电极上As(Ⅲ)的循环伏安行为.通过实时监测EQCM频率等参数的变化过程并利用预电沉积As(O)放大电极响应信号,考察了两电极上As.(O)的电沉积、AsⅢ皿和AsⅤ助组...     

Metal chelates of ampicillin versus amoxicillin: synthesis,structural investigation,and biological studies

Solid chelates derived from some alkaline earth and transition metal complexes with ampicillin (Hamp, a) and amoxicillin (Hamox, b) were synthesized and characterized using elemental analysis, molar conductivity, IR, magnetic susceptibility, and thermogravimetric studies. Both drugs behave as tetradentate ligands coordinating to metal through amino, imino, and carboxylate as well as through β-lactamic carbonyl. All chelates have octahedral geometry except Cu(II) complexes which have square planar structure and uranium has pentagonal bipyramidal coordination. ¹H- and ¹³C-NMR of the Zn(II) and UO₂(VI) chelates are compared with the free ligands. The antimicrobial activity of the prepared chelates was determined.