Zinc(II) complexes of 1,3-bis(2-pyridylmethylthio)propane: Anion dependency, crystal structure and DNA binding study

Zinc(II) complexes of the formula [Zn(L)(X)₂] (where X = Cl⁻, N₃⁻, NCO⁻ and SCN⁻ (1a-d, respectively)) and {[Zn(L)(ClO₄)(H₂O)](ClO₄)}_n (2), were isolated in the pure form on the reaction of 1,3-bis(2-pyridylmethylthio)propane (L) with different zinc(II) salts. All the complexes were characterized by physicochemical and spectroscopic tools. The X-ray crystallographic analyses of the complexes 1d and 2 showed that the former is mononuclear while complex 2 is a 1D coordination polymer, {[Zn(L)(ClO₄)(H₂O)](ClO₄)}_n, due to a different coordination mode of the tetradentate ligand L. The zinc(II) ions present an octahedral coordination geometry in both compounds, which is more distorted in the mononuclear complex 1d. The study indicates that the counter anion of the zinc(II) salt used as reactant leads to a different type of complex when isolated as a crystalline material. A spectroscopic study of the interaction of complex, 2 with calf thymus-DNA (CT-DNA) in Tris-HCl buffer showed a significant non-intercalative interaction with a binding constant (K_b) of 4.7 × 10⁴ M⁻¹, and the linear Stern-Volmer quenching constant (K_sv) and the binding sites (n) were found to be 1.3 × 10³ and 0.92 respectively, calculated from ethidium bromide (EB) fluorescence displacement experiments.     

Syntheses,crystal structures,and DNA-binding properties of two nickel(II) complexes with 1,3-bis(benzimidazol-2-yl)-2-oxapropane derivatives

[Ni(obb)(DMF)₂(H₂O)]·(Pic)₂·0.5DMF (1) and [Ni(Etobb)₂]·(Pic)₂·2DMF (2) (obb = 1,3-bis(benzimidazol-2-yl)-2-oxapropane, Etobb = 1,3-bis(1-ethylbenzimidazol-2-yl)-2-oxapropane, Pic = picrate) have been synthesized and characterized by physicochemical and spectroscopic methods. The structures of both complexes have been determined by X-ray single-crystal diffraction. The coordination geometries of 1 and 2 can be described as distorted octahedra. The interaction of the nickel(II) complexes with calf thymus DNA was investigated by electronic absorption, fluorescence spectroscopy, and viscosity measurements. The experimental results suggest that 1 and 2 bind to DNA in an intercalation mode, and their binding affinity for DNA follows the order 1 > 2. DNA-binding behaviors can be attributed to the large coplanar aromatic rings in the V-shaped ligand and steric hindrance.     

Synthesis and crystal structure characterization of iron(II), cobalt(II) and nickel(II) complexes with 1,3-bis(2-pyridylmethylthio)propane

Three new mononuclear complexes of nitrogen–sulfur donor sets, formulated as [Fe^II(L)Cl₂] (1), [Co^II(L)Cl₂] (2) and [Ni^II(L)Cl₂] (3) where L = 1,3-bis(2-pyridylmethylthio)propane, were synthesized and isolated in their pure form. All the complexes were characterized by physicochemical and spectroscopic methods. The solid state structures of complexes 1 and 3 have been established by single crystal X-ray crystallography. The structural analysis evidences isomorphous crystals with the metal ion in a distorted octahedral geometry that comprises NSSN ligand donors with trans located pyridine rings and chlorides in cis positions. In dimethylformamide solution, the complexes were found to exhibit Fe^II/Fe^III, Co^II/Co^III and Ni^II/Ni^III quasi-reversible redox couples in cyclic voltammograms with E_1/2 values (versus Ag/AgCl at 298 K) of +0.295, +0.795 and +0.745 V for 1, 2 and 3, respectively.     

Syntheses and crystal structures of nickel(II), copper(II), and zinc(II) complexes with a biphenyl-bridged bis(pyrrole-2-yl-methyleneamine) ligand

The reactions of nickel(II), copper(II), and zinc(II) acetate salts with a potentially tetradentate biphenyl-bridged bis(pyrrole-2-yl-methyleneamine) ligand yielded three complexes with different coordination geometries. X-ray crystal structural analysis reveals that in the nickel(II) complex each nickel is five-coordinate, distorted trigonal bipyramid. In the copper(II) complex, each copper is four-coordinate, between square planar and tetrahedral. In the zinc(II) complex, each zinc is four-coordinate with a distorted tetrahedral geometry and the molar ratio of the zinc and ligand is 1 : 2.     

Synthesis,crystal structures,and DNA-binding studies of two silver(I) complexes with 1,3-bis(1-ethylbenzimidazol-2-yl)-2-thiapropane

Two new silver(I) complexes, [Ag(bebt)(methacrylate)] (1) and [Ag₂(bebt)₂](pic)₂ (2) (bebt = 1,3-bis(1-ethylbenzimidazol-2-yl)-2-thiapropane, pic = picrate), have been synthesized and characterized by physico-chemical and spectroscopic methods. Single-crystal X-ray diffraction revealed that the structure of 1 was four-coordinate in a distorted tetrahedral geometry, while in 2, it may be described as a 2 + 1 coordinated silver(I) compound with a nearly linear N–Ag–N backbone and a weak Ag–S interaction. Two ligands are arranged in a face-to-face syn conformation to coordinate to two Ag(I) ions from opposite directions in 2, generating a U-type double layer structure around the metal ions. Experimental studies of the DNA-binding properties indicated that free bebt and both complexes bind to DNA via intercalation, and the order of the binding affinity is 2 > 1 > bebt.     

Synthesis and crystal structures of nickel(II) supramolecules containing hexaazamacrocycles and aromatic carboxylate ligands

Two new nickel(II) complexes, {[Ni(L)(4,4′-bpdc)] · 3H₂O} _n (1) and {[Ni(L)(2,6-ndc)] · 2CH₃CN} _n (2) (L = 1,8-dihydroxylethyl-1,3,6,8,10,13-hexaazacyclotetradecane, 4,4′-bpdc = 4,4′-biphenyldicarboxylate, 2,6-ndc = 2,6-naphthalenedicarboxylate), have been synthesized and structurally characterized by spectroscopic and X-ray diffraction methods. Compound 1 shows a 3-D supramolecule which is composed of two different series of 1-D coordination polymers, where each 1-D chain runs in different directions and interacts by π–π stacking at the intersection. Compound 2 contains 1-D coordination polymers in which 1-D chains run in the same direction. The 1-D chains are interconnected by hydrogen bonds in an undulated fashion to form a 3-D supramolecule.     

Synthesis,crystal structures,and properties of copper(II) complexes with 2,6-bis(benzimidazol-2-yl)pyridine

Three new mononuclear copper(II) complexes, [CuL(2-fca)(CH₃OH)]ClO₄?·?CH₃OH (1), [CuL(m-nba)(CH₃OH)]ClO₄ (2), and [CuL(pic)(ClO₄)]?·?CH₃OH (3), were synthesized and structurally characterized, where L is 2,6-bis(benzimidazol-2-yl)pyridine, while 2-fca, m-nba, and pic are the anions of 2-furoic acid, m-nitrobenzoic acid, and picolinic acid, respectively. All of them were characterized by elemental analysis, infrared, UV-Vis, and X-ray crystallography. In 1 and 2, the Cu(II) resides within a distorted square-pyramidal N₃O₂ coordination sphere with three nitrogens of L, one carboxylate oxygen, and one methanol. In 3, Cu(II) is coordinated with three nitrogens of L, one nitrogen and one oxygen of picolinate, and one oxygen of perchlorate in a distorted octahedral geometry. Two molecules of 1, 2, and 3 are interacted by intermolecular hydrogen-bonding interactions and strong π–π stacking interactions to form a dinuclear structural unit. The dinuclear units are further connected by H-bonds via perchlorate or lattice methanol to form a 1-D chain for 1 and 2-D network structures for 2 and 3. Hydrogen-bonding and π–π stacking interactions are important for the stabilization of the final supramolecular structures of the three complexes.     

Synthesis,characterization, and DNA-binding of a four-coordinate cobalt(II) complex with 1,3-bis(1-ethylbenzimidazol-2-yl)-2-oxopropane

A new four-coordinate cobalt(II) complex with 1,3-bis(1-ethylbenzimidazol-2-yl)-2-oxopropane (Etobb), Co(Etobb)Cl₂, has been synthesized and characterized by elemental analysis, electrical conductivities, infrared, and UV-Vis spectral measurements. The crystal structure has been determined by single-crystal X-ray diffraction. Cobalt(II) is a distorted tetrahedral geometry, surrounded by two nitrogens from Etobb and two chlorides. DNA-binding properties of Etobb and its Co(II) complex have been investigated by electronic absorption, fluorescence, and viscosity measurements. The experimental results suggest that the ligand and its Co(II) complex bind to DNA via intercalation, and the binding affinity of the Co(II) complex to DNA is greater than Etobb.     

Syntheses,crystal structures,and antibacterial activities of manganese(III), nickel(II), and copper(II) complexes containing a tetradentate Schiff base

Three new mononuclear Schiff-base complexes, namely [Mn(L)Cl] (1), [Ni(L)] (2), and [Cu(L)] (3), where L?=?anion of [N,N′-bis(2-hydroxybenzophenylidene)]propane-1,2-diamine, have been synthesized by reacting equimolar amounts of the respective metal chloride and the tetradentate Schiff base, H₂L, in methanol. The complexes have been characterized by microanalytical, spectroscopic, single-crystal X-ray diffraction, and other physicochemical studies. Structural studies reveal that 1 adopts a distorted square-pyramidal geometry whereas 2 and 3 are isotypic with distorted square-planar geometries. The antibacterial activities of 1–3 along with their Schiff base have been tested against some Gram(+) and Gram(?) bacteria.     

Syntheses and crystal structures of cobalt and nickel complexes of 2,6-bis(hydroxymethyl)pyridine

2?:?1 (L?:?M) Complexes of 2,6-bis(hydroxymethyl)pyridine (dhmp) with different Co(II) salts [CoCl₂·6H₂O, Co(SCN)₂, Co(NO₃)₂·6H₂O, CoSO₄·7H₂O and Co(OTos)₂·6H₂O] and Ni(II) salts [NiCl₂·6H₂O, Ni(NO₃)₂·6H₂O, NiSO₄·7H₂O and Ni(OTos)₂·6H₂O] have been prepared (1–9) and studied by infrared spectroscopy and X-ray crystallography. Influences on the distortion of the coordination polyhedron, the arrangement of the donor atoms and the packing structure of the complexes were investigated in terms of the different kinds of anions and cations. In the metal chloride Complexes 1 and 2, water of hydration was found, while in Complex 3 the counterion (SCN^–) acts as a ligand. The crystal structures of all complexes, except 3, show N₂O₄ hexacoordinated metal ions; in 3 the coordination environment is N₄O₂. Complex 1 is another exception in containing cobalt(III) instead of cobalt(II) as for the other complexes with cobalt salts. Logically, in Complex 1, one of the dhmp ligands is mono-deprotonated. In the neutral Complexes 2 and 4–9, the basal planes of the octahedra are made up of O donors and N atoms occupy the axial positions. In 1 as well as in 3, two N and two O atoms form the base, but in 1 O, and in 3 N atoms are on the axis of the coordination sphere. Moreover, the nickel Complexes 2, 5, 7 and 9 are more symmetrical in structure than the cobalt Complexes 1, 4, 6 and 8, in accordance with the Jahn–Teller effect. Packing structures of the complexes show specific interactions based on strong and weak H-bonds that involve the counterions, hydroxy groups and aromatic units, leading to extended network structures.     

Spectral and structural studies of nickel(II) complexes of salicylaldehyde 3-azacyclothiosemicarbazones

Mononuclear nickel(II) complexes with two ONS donor thiosemicarbazone ligands {salicylaldehyde 3-hexamethyleneiminyl thiosemicarbazone [H₂L¹] and salicylaldehyde 3-tetramethyleneiminyl thiosemicarbazone [H₂L²]} have been prepared and physico-chemically characterized. IR and electronic spectra of the complexes have been obtained. The thiosemicarbazones bind to the metal as dianionic ONS donor ligands in all the complexes except in [Ni(HL¹)₂] (1). In compound 1, the ligand is coordinated as a monoanionic (HL⁻) one. The magnetic susceptibility measurements indicate that all the complexes are mononuclear and are diamagnetic. The complexes were given the formulae [Ni(HL¹)₂] (1), [NiL¹py] (2), [NiL¹α-pic] (3), [NiL¹γ-pic] · H₂O (4), [NiL²py] (5) and [NiL²γ-pic] (6). The structures of compounds 2 and 3 have been solved by single crystal X-ray crystallography and were found to be distorted square planar in geometry with coordination of azomethine nitrogen, thiolato sulfur, phenolato oxygen and pyridyl nitrogen atoms.     

DNA cleavage activities of tetraazamacrocyclic oxamido nickel(II) complexes

The DNA cleavage activities of nickel(II) ion and four closely related macrocyclic nickel(II) complexes NiL¹ ∼ NiL⁴ in the absence of any added redox cofactors are compared and the structure of NiL³ methanol solvate has been characterized by single crystal X-ray analysis, where L¹ ∼ L⁴ are the dianions of tetraazamacrocyclic oxamido Schiff bases. In NiL³·MeOH, the macrocyclic [N₄] ligand coordinates to the central Ni(II) ion forming a distorted square–planar geometry. The adjacent mononuclear molecules are linked by O–H?O hydrogen bonds and Ni?O and Ni?L van der Waals forces into 2D supramolecular structure. Agarose gel electrophoresis studies indicate that the ability of these nickel(II) complexes to cleave DNA is highly dependent upon the ligand employed. In the absence of any added oxidizing agents, only NiL³ is a relatively good DNA cleavage agent, and the process of plasmid DNA cleavage is much sensitive to ionic strength and pH value. The NiL³-mediated DNA cleavage reaction is a typical pseudo-first-order consecutive reaction, and the rate constants of 0.148 ± 0.007 h⁻¹ (k₁) and 0.0118 ± 0.0018 h⁻¹ (k₂) for the conversion of supercoiled to nicked DNA and nicked to linear DNA are obtained in presence of 0.5 mmol L⁻¹ NiL³. The results of DNA cleavage experiments, combining with those of circular dichroism (CD) and fluorescence spectroscopy indicate that the main binding modes between DNA and the complexes should be groove binding and electrostatic interaction.     

Nickel(II) complexes of tetradentate NSNO pyridylthioazophenol ligands: Synthesis,characterization and crystal structure

Two sets of nickel(II) complexes of a series of tetradentate NSNO ligands were synthesized and isolated in their pure form. All these complexes, formulated as [Ni(L)Cl]₂ and [Ni(L)(N₃)]₂ [HL = pyridylthioazophenols], were characterized using physicochemical and spectroscopic tools. The solid-state structures of two complexes (1a and 2a) were established by X-ray crystallography. The geometry about the nickel ion of the complexes is octahedral and the complexes are dimeric in nature. In 1, two Ni(II) ions are bridged by two Cl⁻ anions while in 2 they are bridged by two azide ions in a μ-1,1-bridging fashion.     

Synthesis,crystal structure,DNA-binding properties,and antioxidant activity of a V-shaped ligand bis(N-methylbenzimidazol-2-ylmethyl)benzylamine and its zinc(II) complex

A V-shaped ligand bis(N-methylbenzimidazol-2-ylmethyl)benzylamine (L) and its zinc(II) complex, [ZnL ₂](pic)₂?·?2CH₃CN (pic?=?picrate), have been synthesized and characterized by physico-chemical and spectroscopic methods. Single-crystal X-ray crystallographic analysis revealed that the Zn(II) complex possesses a distorted trigonal bipyramidal geometry. Supramolecular interactions arising from various intra- or intermolecular π···π stacking interactions contributed to the form of the multidimensional configuration. Interactions of L and Zn(II) complex with DNA were monitored using spectrophotometric methods and viscosity measurements. The results suggest that L and Zn(II) complex both bind to DNA via intercalation and Zn(II) complex binds to DNA more strongly than L. Moreover, the Zn(II) complex also exhibited potential antioxidant properties in vitro.     

Three Mn(II) complexes with 1,3-bis(4-pyridyl)propane and their supramolecular nets

Three complexes, [Mn(bpp)₄(H₂O)₂](ClO₄)₂?·?1.5H₂O (1), [Mn(bpp)₃Br₂]?·?2H₂O (2), and [Mn(bpp)₂(H₂O)₂](ClO₄)?·?I?·?H₂O?·?bpp (3) (bpp?=?1,3-bis(4-pyridyl)propane), were synthesized and structurally characterized by single-crystal X-ray diffraction. Complex 1 is mononuclear where M(II) is coordinated to a monodentate TT-bpp, three monodentate TG-bpp, and two water molecules. Complex 2 possesses a single-stranded helical chain formed from MnN₄Br₂ octahedra by a single TT-bpp, with pendant monodentate TG-bpp ligands. Complex 3 consists of a ribbon-type double-stranded chain formed from MnN₄O₂ octahedra by double TG-bpp ligands. 2-D supramolecular architectures of 1–3 are formed by hydrogen bonds. The fluorescence of the three complexes comes from the π*–π transition of the ligand.     

Sodium-mediated self-assembly of two nickel(II) Schiff base complexes: crystal structure and characterizations

Sodium-assisted self-assembly of two nickel(II) Schiff base complexes under similar reaction conditions yield hetero-metallic compounds [{Ni(salpn)}₂Na(ClO₄)] (1) and [{Ni(salpr)}₃Na][Ni(salpr)]₂ClO₄·2H₂O (2) (where salpn?=?N,N′-bis-(salicylidene)-1,3-diaminopropane and salpr?=?N,N′-bis-(salicylidene)-1,2-diaminopropane). Both have been characterized by physico-chemical techniques and single-crystal X-ray diffraction. Crystal structure reveals that in the tri-metallic system of 1 sodium is sandwiched between two [Ni(salpn)] units while the hexametallic system of 2 consists of tetrametallic cluster ion [{Ni(salpr)}₃Na]⁺ with encapsulated sodium by three [Ni(salpr)] units. In both complexes, sodium adopts distorted trigonal prismatic geometry leaving nickel(II) in a distorted square-planar environment. Structural characterization also reveals that 2?:?1 (for 1) and 3?:?1 (for 2) self-assemblies of metallo-ligand and sodium were achieved with slight variation in ligand backbone.