Chemiluminescence Detection of Amino Acids,Peptides, and Proteins Using Tris-2,2′-Bipyridine Ruthenium (III)

Abstract

The feasibility of using the tris-2-2′-bipyridine ruthenium (III) (Ru(bpy)₃ ^{3 +}) chemiluminescent (CL) reaction for the detection of amino acids, peptides, and proteins has been studied.

Detection limits of the amino acids as determined by flow injection analysis (FIA) ranged from 20 pmol of proline to 50 nmol of asparagine. In general, amino acids containing secondary amine groups yielded the strongest responses. A reaction mechanism for Ru (bpy)₃ ^{3 +} chemiluminescence of aliphatic amines has been proposed. Studies of peptide molecules and poly-prolines showed that the peptide bond barely contributes to the detection signals. The separation of hydroxyproline and proline in synthetic collagen by HPLC with Ru (bpy)₃ ^{3 +} chemiluminescence detection has been shown to be possible.     

Improving activity of anticancer oxalipalladium analog by the modification of oxalate group with isopentylglycine

In this article, we describe the influence of structure on biological behavior of amino acid-Pd complex and compare it with oxalipalladium. A new water-soluble oxalipalladium analog with formula of [Pd(DACH)(isopentylgly)](NO₃), where DACH is 1R,2R-diaminocyclohexane, has been synthesized and characterized by elemental analysis, conductivity measurements, IR, UV–Vis, and ¹H NMR spectroscopies. The interactions of oxalipalladium and its amino acid derivative with highly polymerized calf-thymus DNA have been extensively studied by spectroscopic methods. The high binding constants of oxalipalladium (0.38 × 10⁴ M^?1) and new amino acid-Pd complex (0.65 × 10⁴ M^?1) were determined using absorption measurements. Also circular dichroism (CD) studies show that Pd complex causes more disturbances on DNA structure rather than oxalipalladium. The experimental results proposed that [Pd(DACH)(isopentylgly)](NO₃) is bound to DNA by groove-binding mode as well as partially covalent interaction, while oxalate analog binds covalently to DNA after hydrolysis. Interaction of the two metal derivative complexes was studied by molecular docking simulation. The results showed that amino acid-Pd complex has higher negative docking energy and higher tendency for interaction with DNA, and exert more structural change on DNA. Finally, the anticancer and growth inhibitory activities of synthesized complexes were investigated against human colon cancer cell line of HCT116 after 24 h incubation time using MTT assay. Results show that the complex [Pd(DACH)(isopentylgly)](NO₃) showed enhanced anticancer and growth inhibitory activities against human colon can cell line HCT116.     

The Synthesis,Characterization and DC Electrical Conductivity of Polypyrrole‐Zirconium Complex

Polypyrrole‐zirconium complex has been synthesized by reacting 2‐amino‐3,4‐dicyano‐5‐mercaptopyrrole with zirconium nitrate in absolute ethanol under reflux for 24 h. The product has been characterized by elemental analyses, FTIR spectroscopy, in addition to thermal analysis (TGA and DSC) and its solubility has been investigated. The DC electrical conductivity variation of polypyrrole‐zirconium complex has been studied in the temperature range 300–500 K after annealing for 24 h at 100°C and doping with I₂, FeCl₃ and CuCl₂ · H₂O for comparison. An attempt has been made to interpret the DC electrical conductivity behavior and thermal properties to chain length, dopant used, polymer structure and attached groups.     

Mixed Ligand Complexes of 5-arylazo-8-hydroxyquinoline and α-amino Acids with Co(II), Ni(II) and Cu(II)

Ten mixed ligand complexes of the type [M(X-QA)(aa)] and [Ni(X-QA)₂(Haa)(H₂O)],where X-HQA=5-arylazo-8-hydroxyquinoline derivatives, M=Co(II) orCu(II) and Haa=glycine (gly), alanine (ala) or methionine (met), have been prepared. The complexes have been characterized by elemental analysis, IR and electron spectra and thermal analysis. A tetrahedral structure has been proposed for the cobalt(II) and copper(II) complexes with bidentate coordination of amino acids. The nickel(II) complexes have been assigned an octahedral structure with the amino acids acting as monodentate ligands. The thermal behaviour of the complexes has been studied before and after γ-irradiation. This revised version was published online in August 2006 with corrections to the Cover Date.     

Determination of intrinsic properties of immobilized enzymes

Staphylococcal nuclease has been insolubilized, directly through its amino groups, on CNBr-activated Sepharose 2B. For kinetic studies, a small substrate (thymidine 5′-(p-nitrophenyl phosphate) 3′-phosphate) has been used to measure the hydrolytic activity. With this system the absence of diffusional limitation has been proven. Eadie-Hofstee analysis of the data has been employed to determine the intrinsic kinetic constants of the insolubilized enzyme. Thek _cat-pH andK _M−pH profiles and the activation energies are similar for the soluble and for the insolubilized nuclease. At the same time conditions are established in which a stirred batch reactor containing particles of insolubilized nuclease behaves as an open system.     

Single Crystal to Single Crystal (SC‐to‐SC) Transformation from a Nonporous to Porous Metal–Organic Framework and Its Application Potential in Gas Adsorption and Suzuki Coupling Reaction through Postmodification

A new amino‐functionalized strontium–carboxylate‐based metal–organic framework (MOF) has been synthesized that undergoes single crystal to single crystal (SC‐to‐SC) transformation upon desolvation. Both structures have been characterized by single‐crystal X‐ray analysis. The desolvated structure shows an interesting 3D porous structure with pendent ?NH₂ groups inside the pore wall, whereas the solvated compound possesses a nonporous structure with DMF molecules on the metal centers. The amino group was postmodified through Schiff base condensation by pyridine‐2‐carboxaldehyde and palladium was anchored on that site. The modified framework has been utilized for the Suzuki cross‐coupling reaction. The compound shows high activity towards the C?C cross‐coupling reaction with good yields and turnover frequencies. Gas adsorption studies showed that the desolvated compound had permanent porosity and was microporous in nature with a BET surface area of 2052 m² g^?1. The material also possesses good CO₂ (8 wt %) and H₂ (1.87 wt %) adsorption capabilities.     

Development and tailoring of amino-functionalized activated carbon based Cucumerupsi manni Naudin seed shells for the removal of nitrate ions from aqueous solution

The removal of nitrate ions with ethylenediamine (EDA)-functionalized activated carbon (AC-NH₂) was studied in this work. Activated carbon prepared from Cucumerupsi manni Naudin seed shells using ZnCl₂ (ACZ) was functionalized with EDA via a nitric acid oxidation followed by acyl chlorination and amidation process. The effect of pH, contact time, initial concentration and co-existing ions on the adsorption of nitrate ions have been investigated. The FTIR and elemental analysis revealed that amino groups were successfully grafted onto the ACZ after functionalization. The surface area and average pore of ACZ were found to be 1008.99 m²/g and 2.02 nm respectively. However, it was noticed that, after functionalization (AC-NH₂), its surface area decreases to 113.43 m²/g meanwhile, its pore diameter increases to 2.48 nm. The experimental results of adsorption showed that AC-NH₂ exhibit excellent nitrate ions uptake performance compared to ACZ which is attributed to the presence of the grafted amino groups on the ACZ. Nitrate adsorption follows pseudo-first-order kinetic model while the equilibrium adsorption data was best fitted the Freundlich isotherm suggesting that the adsorption process was predominated by physisorption. This study demonstrates that the prepared AC-NH₂ is a promising adsorbent for nitrate ions removal from aqueous media.     

Surface chemistry of silicon nitride powders: Adsorption from non-aqueous solutions

The adsorption behaviour of different silicon nitride powders in cyclohexane has been studied. Adsorption isotherms of organic probe molecules covering a wide spectrum of Lewis acidity/basicity showed large variations in adsorption behaviour between the different probes. Mathematical analysis showed that the adsorption data could be described by a Langmuir-Freundlich type of isotherm.Using a previously presented model of the silicon nitride surface, it was possible to relate the variation of the isoclectric point in water between the three powders, to a difference in the relative site density or silanol and amino groups on the surface. It was found that the maximum concentration (T_M) of benzoic acid increased linearly while of pyridine decreased with an increase in the relative amount of amino groups on the surface.     

Carbon Dioxide Capture and Utilization with Isomeric Forms of Bis(amino)-Tagged Zinc Bipyrazolate Metal–Organic Frameworks

Aiming at extending the tagged zinc bipyrazolate metal–organic frameworks (MOFs) family, the ligand 3,3’-diamino-4,4’-bipyrazole ( 3,3’-H₂L ) has been synthesized in good yield. The reaction with zinc(II) acetate hydrate led to the related MOF Zn(3,3’-L) . The compound is isostructural with its mono(amino) analogue Zn(BPZNH₂) and with Zn(3,5-L) , its isomeric parent built with 3,5-diamino-4,4’-bipyrazole. The textural analysis has unveiled its micro-/mesoporous nature, with a BET area of 463 m² g⁻¹. Its CO₂ adsorption capacity (17.4 wt. % CO₂ at p_CO2 = 1 bar and T = 298 K) and isosteric heat of adsorption (Q_st = 24.8 kJ mol⁻¹) are comparable to that of Zn(3,5-L) . Both Zn(3,3’-L) and Zn(3,5-L) have been tested as heterogeneous catalysts in the reaction of CO₂ with the epoxides epichlorohydrin and epibromohydrin to give the corresponding cyclic carbonates at T = 393 K and p_CO2 = 5 bar under solvent- and co-catalyst-free conditions. In general, the conversions recorded are higher than those found for Zn(BPZNH₂), proving that the insertion of an extra amino tag in the pores is beneficial for the epoxidation catalysis. The best catalytic match has been observed for the Zn(3,5-L) /epichlorohydrin couple, with 64 % conversion and a TOF of 5.3 mmol(carbonate) (mmol_Zn)⁻¹ h⁻¹. To gain better insights on the MOF-epoxide interaction, the crystal structure of the [epibromohydrin@ Zn(3,3’-L) ] adduct has been solved, confirming the existence of Br⋅⋅⋅(H)−N non-bonding interactions. To our knowledge, this study represents the first structural determination of a [epibromohydrin@MOF] adduct.     

A Computational Analysis of the Reaction of SO2 with Amino Acid Anions: Implications for Its Chemisorption in Biobased Ionic Liquids

We report a series of calculations to elucidate one possible mechanism of SO₂ chemisorption in amino acid-based ionic liquids. Such systems have been successfully exploited as CO₂ absorbents and, since SO₂ is also a by-product of fossil fuels’ combustion, their ability in capturing SO₂ has been assessed by recent experiments. This work is exclusively focused on evaluating the efficiency of the chemical trapping of SO₂ by analyzing its reaction with the amino group of the amino acid. We have found that, overall, SO₂ is less reactive than CO₂, and that the specific amino acid side chain (either acid or basic) does not play a relevant role. We noticed that bimolecular absorption processes are quite unlikely to take place, a notable difference with CO₂. The barriers along the reaction paths are found to be non-negligible, around 7–11 kcal/mol, and the thermodynamic of the reaction appears, from our models, unfavorable.     

Rhodium‐catalyzed Asymmetric Hydrogenation of α‐Dehydroamino Ketones: A General Approach to Chiral α‐amino Ketones

Rhodium/DuanPhos‐catalyzed asymmetric hydrogenation of aliphatic α‐dehydroamino ketones has been achieved and afforded chiral α‐amino ketones in high yields and excellent enantioselectives (up to 99 % ee), which could be reduced further to chiral β‐amino alcohols by LiAlH(tBuO)₃ with good yields_. This protocol provides a readily accessible route for the synthesis of chiral α‐amino ketones and chiral β‐amino alcohols.     

Immobilization of acetylcholinesterase on functionalized SBA-15 mesoporous molecular sieve for detection of organophosphorus and carbamate pesticide

A novel method for the immobilization of acetylcholinesterase (AChE) on amino modified SBA-15 mesoporous molecular sieves was developed via electrostatic adsorption and glutaraldehyde crosslinking. The immobilized AChE could be exploited as a fast, sensitive and low-cost biocatalyst towards the detection of pesticides residues which could be stored at room temperature for a long time.     

Cyclic (Amino)(Phosphonium Bora‐Ylide)Silanone: A Remarkable Room‐Temperature‐Persistent Silanone

A silanone substituted by bulky amino and phosphonium bora‐ylide substituents has been isolated in crystalline form. Thanks to the exceptionally strong electron‐donating phosphonium bora‐ylide substituent, the lifetime at room temperature of the silanone is dramatically extended (t _1/2=4 days) compared to the related (amino)(phosphonium ylide)silanone VI (t _1/2=5 h), allowing easier manipulation and its use as precursor of new valuable silicon compounds. The interaction of silanone with a weak Lewis acid such as MgBr₂ increases further its stability (no degradation after 3 weeks at room temperature).     

Y443F mutation in the substrate-binding domain of extracellular PHB depolymerase enhances its PHB adsorption and disruption abilities

Extracellular poly[(R)-3-hydroxybutyrate] (PHB) depolymerase (PhaZ_RpiT1) from Ralstonia pickettii T1 adsorbs to the PHB surface via its substrate-binding domain (SBD) and cleaves the PHB chain using its catalytic domain. Our previous study (Biomacromolecules 2010; 11: 113-119) has suggested that the hydrophobic interaction between the amino acid residues at positions 441, 443, and 445 in the SBD and the PHB surface plays a crucial role in facilitating the association phase of the enzyme adsorption process. In the present study, in order to improve PhaZ_RpiT1 for effective PHB degradation, we targeted Tyr at position 443 for substitution with a more highly hydrophobic amino acid residue because its hydrophobicity shows medium to high degree compared to those of general naturally occurring amino acid residues. We designed a mutant enzyme with an amino acid substitution at this position, taking the following factors into consideration: (1) to achieve higher hydrophobicity than the original residue, (2) to retain the β-sheet structure, and (3) to change as little as possible the volume of the amino acid residue after the substitution. As a result, the substitution of Tyr443 with Phe (Y443F) was considered to be appropriate. The purified Y443F enzyme showed identical CD spectrum and hydrolysis activity for a water-soluble substrate with the wild type, indicating that the mutation had no influence on the structure and the ester bond cleavage activity. In contrast, the Y443F enzyme had higher PHB degradation activity than the wild type. Kinetic analysis of PHB degradation suggests that this amino acid substitution promoted not only the adsorption of the mutant enzyme to PHB, but also the disruption of the PHB surface to enhance the hydrolysis of the PHB polymer chain.     

Synthesis,spectroscopic, and antimicrobial studies of the bivalent zinc and mercury complexes of thiosemicarbazide

A series of metal complexes of Zn(II) and Hg(II) having the general composition [ML₂]X₂ with thiosemicarbazide have been prepared and characterized by elemental chemical analysis, molar conductance, and spectral (IR and mass) studies. The IR spectral data suggest the involvement of sulfur and terminal amino nitrogen in coordination to central metal ion. On the basis of spectral studies, a tetrahedral geometry has been assigned for the Zn(II) and Hg(II) complexes. Thiosemicarbazide and its metal complexes have been tested in vitro against a number of microorganisms in order to assess their antimicrobial properties. The article is published in the original.     

Antitumor Activity and Physicochemical Properties of New Thiosemicarbazide Derivative and Its Co(II), Ni(II), Cu(II), Zn(II) and Cd(II) Complexes

A novel biologically active thiosemicarbazide derivative ligand L (N-[(phenylcarbamothioyl)amino]pyridine-3-carboxamide) and a series of its five metal(II) complexes, namely: [Co(L)Cl₂], [Ni(L)Cl₂(H₂O)], [Cu(L)Cl₂(H₂O)], [Zn(L)Cl₂] and [Cd(L)Cl₂(H₂O)] have been synthesized and thoroughly investigated. The physicochemical characterization of the newly obtained compounds has been performed using appropriate analytical techniques, such as ¹H and ^l3C nuclear magnetic resonance (NMR), inductively coupled plasma (ICP), thermogravimetric analysis (TGA), Fourier-transform infrared spectroscopy (FTIR) and magnetic measurements. In order to study the pharmacokinetic profile of the compounds, ADMET analysis was performed. The in vitro studies revealed that the synthesized compounds exhibit potent biological activity against A549 human cancer cell line.     

1,1′‐Dimethylvanadocene α‐amino acid complexes: synthesis,characterization and antimicrobial behavior toward Escherichia coli B

Eight water‐soluble 1,1′‐dimethylvanadocene amino acid complexes have been prepared via the reaction of (MeCp)₂VCl₂ ( 2 ) with one equivalent of amino acid (aa) in water affording [(MeCp)₂V( aa )]Cl, where aa is glycine ( 3 ), L ‐alanine ( 4 ), L ‐valine ( 5 ), L ‐leucine ( 6 ), L ‐isoleucine ( 7 ), L ‐phenylalanine ( 8 ), L ‐histidine ( 9 ) and L ‐tryptophane ( 10 ). All prepared complexes have been characterized by EPR, IR and Raman spectroscopy, elemental analysis and mass spectrometry. Molecular structures of [(MeCp)₂V(ala)]BPh₄·CH₃OH ( 11 ), [(MeCp)₂V(leu)]PF₆ ( 12 ) and [(MeCp)₂V(ile)]PF₆ ( 13 ) were determined by X‐ray diffraction analysis. Cytotoxic properties of complexes 2–10 were investigated toward Escherichia coli B and compared with analogical unsubstituted vanadocene compounds ( 1, 14–21 ). The results showed that 1,1′‐dimethylvanadocene amino acid complexes have identical or slightly higher antiproliferative activity then their unsubstituted analogs. Copyright © 2006 John Wiley & Sons, Ltd.     

N-Hydroxysuccinimidyl phenylacetate as a novel derivatizing reagent for aliphatic amines in gas chromatography

A new succinimidyl ester amine-reactive reagent, N-hydroxysuccinimidyl phenylacetate (SIPA), has been synthesized for analytical derivatization of aliphatic amines, such as methylamine, ethylamine, propylamine, butylamine and pentylamine in gas chromatography (GC). The derivatiation conditions were investigated in detail. The experimental results showed that SIPA was a useful reagent with the advantages including mild derivatization condition, rapid reaction time and selectivity to amino group. In a pH 8.5 H₃BO₃-Na₂B₄O₇ buffer solution and dichloromethane, the derivatization and extraction can be accomplished at the same time and excess reagent need not be removed before analysis, which greatly simplified the sample preparation. The derivatives were analyzed by gas chromatography-mass spectrometry (GC-MS) and gas chromatography/flame ionization detector (GC/FID). The detection limits (S/N=3) were in the range of pmol level.     

Fluorescence and biochemical characterization of glycated hemoglobin

Isoelectric focusing (IEF) of glycated hemoglobin (GHb) was carried out in ultra-thin polyacrylamide gels to separate the hemoglobin-advanced glycation endproducts (Hb-AGEs) from the hemoglobin-A_1C (HbA_1C) fraction. Precast polyacrylamide gels (Ampholine^® PAGplate) were used in Pharmacia LKB Multiphor II for this purpose. The separated bands for Hb-AGE and HbA_1C based on their isoelectric point (pI), were confirmed with the purifed fractions obtained from the cation exchange chromatographic technique. From the calibration curve, the pI values were found to be 6.748 and 6.495 for HbA_1C and Hb-AGE, respectively. The lowering of pI values for glycated hemoglobin, when compared to unglycated hemoglobin (pI = 6.852), can be attributed to the glycation at the amino terminals of the peptide chains. Increased reduction in pI value for Hb-AGE can be attributed to the effect of glycation of amino groups at various sites on the peptide chains, apart from the terminal amino groups. Fluorescence analysis was carried out for the purified fraction of Hb-AGE which showed the formation of a new fluorophor adduct having the excitation and emission maxima at 308 nm and 345 nm, respectively. Time-dependent formation of Hb-AGE under in vitro conditions was monitored by fluorescence (308/345 nm) over a period of 120 days, which showed its formation only after 3 weeks of incubation.     

Complex Formation Reactions of Divinyltin(IV) Complexes with Amino Acids,Peptides, Dicarboxylic acids and Related Compounds

Complex formation equilibria of divinyltin(IV) with amino acids, peptides, and dicarboxylic acids have been investigated. Stoichiometry and stability constants for the complexes formed were determined at 25°C and ionic strength 0.1 M NaNO₃. The results showed the formation of ML, MLH, and ML₂ (organotin : ligand : hydrogen) complexes with amino acids. Peptides form ML complexes and the corresponding deprotonated amide species MLH_?1. In the latter species the binding with divinyltin(IV) occurs through the terminal amino group, carboxylate oxygen, and the amide nitrogen atoms (CO^? ₂, N^? _amide, NH₂). The results showed the formation of ML and ML₂ complexes with dicarboxylic acids. The concentration distribution of the complexes in solution was evaluated. The bonding sites of the divinyltin(IV) complex in solid state with oxalic acid was investigated by means of elemental analyses, FTIR, and mass spectra. Non-isothermal decomposition of the above complex has been studied and the result was statistically analyzed. The main steps were identified for the thermal decomposition reaction and each step proved to be a first order reaction. The kinetic parameters E _a and A were calculated for each step in the reaction. The thermodynamic functions H, G, and S* were calculated for each step of the reaction.