Structures of an infinite helical water chain and discrete lattice water in metal–organic framework structures

Two supramolecular complexes Ni[(Py)₂C(OH)₂]₂·(CH₃COO)₂·4H₂O 1 and Co[(Py)₂C(OH)₂]₂·(CH₃COO)₂·2H₂O 2 have been synthesized under hydrothermal conditions and structurally characterized by elemental analysis, IR spectra, and X-ray single-crystal diffraction. The X-ray diffraction analysis indicates that the center metal (Ni²⁺ and Co²⁺) ions having the same coordination environments are chelated by two pyridyl N atoms and a hydroxyl O atom of the gem-diol ligand in an octahedral geometry. In 1, the lattice water molecules form infinite single helical chains, while in 2, two lattice water molecules are discrete. In their crystal structures, intermolecular O–H···O and C–H···O hydrogen bonds form an extensive three-dimensional network, which consolidates the crystal packing.     

Synthesis and crystal structure of mercury(II) chloride–ferron (7-iodo-8-hydroxyquinoline-5-sulfonic acid) adduct

A mercury(II) chloride adduct of ferron (7-iodo-8-hydroxyquinoline-5-sulfonic acid), [HgCl₂ (C₉H₆INO₄)·H₂O] has been synthesized and characterized by X-ray diffraction analysis and spectroscopic studies. The compound crystallizes in P2₁/c space group, a?=?8.919(3), b?=?23.216(3), c?=?7.714(3)?Å, β?=?95.79(3)°. The coordination geometry around mercury is distorted square planar [(2+2) coordination] with two short Hg–Cl bonds [2.308(2) and 2.309(18)?Å] and two long Hg–O(sulfonate) [2.738(4)?Å] and Hg–O(water) [2.889(4)?Å] bonds. The sulfonic group is deprotonated, the proton having migrated to the quinoline N atom that forms intermolecular hydrogen bonds. The inversion related organic ligands are stacked over one another. The crystal structure is further stabilized by a C–H···O, O–H···O and N–H···O hydrogen bonds.     

(π)C—H···S, (allyl)C—H···C(π) and π···π intermolecular interactions: synthesis, characterization, and crystal structure of 2,2′-bipyridine bis(diallyldithiocarbamato)zinc(II)

A mixed-ligand Zn(II) complex formulated as [Zn(aldtc)₂(bipy)] (aldtc=diallyldithiocarbamate; bipy=2,2′-bipyridine) was synthesized and characterized by IR, ¹H and ¹³C NMR spectral measurements and X-ray crystallography. The crystal structure of this complex indicates that Zn has a distorted octahedral geometry. The Zn—N distances are invariant (2.168(2) Å), while those of the Zn—S are slightly different (2.5408(9) and 2.5440(9) Å). The N—Zn—N, S—Zn—S and N—Zn—S bond angles are in the range 75.35(13)–99.75(7)°, 70.48(3)–161.02(5)° and 95.26(7)–160.32(7)°, respectively. The crystal packing of the complex shows different motifs of supramolecularity resulting from both hydrophilic ((π)C—H···S) and hydrophobic ((allyl)C—H···C(π)) intermolecular interactions. These interactions result in a chain arrangement of molecules along crystallographic c axis and the chains are further connected via π···π stacking along with ((π)C—H···S along b axis leading to an overall crystal packing that can be regarded as layers of complexes along bc plane, which are held together through nonconventional hydrogen bonding and π···π stacking.     

Synthesis and Characterization of Monomeric Aryloxo Palladium Complexes of the Type [Pd(N–N)(OAr)(C6F5)]. Crystal Structure of [Pd(tmeda)(C6F5)(OC6H4NO2‐p)]

Mononuclear palladium‐hydroxo complexes of the type [Pd(N–N)(C₆F₅)(OH)][(N–N) = 2,2′‐bipyridine (bipy), 4,4′‐dimethyl‐2,2′‐bipyridine (Me₂bipy), 1,10‐phenantroline (phen) or N,N,N′,N′‐tetramethylethylenediamine (tmeda) react with phenols ArOH in tetrahydrofuran giving the corresponding aryloxo complexes [Pd(N–N)(C₆F₅)(OAr)]. Elemental analyses and spectroscopic (IR, ¹H and ¹⁹F) methods have been used to characterize the new complexes. The X‐ray crystal structure of [Pd(tmeda)(C₆F₅)(OC₆H₄NO₂‐p)] has been determined. In the crystal packing the planes defined by two C₆H₄ rings show a parallel orientation. There are also intermolecular C–H···F and C‐H···O hydrogen bonds.     

One‐pot Synthesis of a 3,4,5‐Triaryltriazole from the Subsitituted 1,3,4‐Oxadiazole: Crystal Structures Characterization

Two heterocyclic compounds, 2‐(p‐bromophenyl)‐5‐(2‐pyridyl)‐1,3,4‐oxadiazole ( 1 ) and 3‐(p‐bromophenyl)‐4‐phenyl‐5‐(2‐pyridyl)‐1,2,4‐triazole ( 2 ) were successfully synthesized and characterized by UV–vis, FTIR, ¹H NMR, ESI‐MS spectra, elemental analysis, and single crystal X‐ray crystallography. The structural analysis indicates that 1 is almost a planar molecule but 2 not. The crystal structure of 1 is stabilized by two kinds of intermolecular π–π interactions and two types of intermolecular C–H···N hydrogen bonds, whereas 2 by three kinds of C–H···π interactions and three types of intermolecular C–H···N hydrogen bonds. Additional, 2 can be prepared directly from 1 in an aniline solution at 190°C in a yield of 70%.     

Co(en)3[B4O5(OH)4]Cl·3H2O和[Ni(en)3][B5O6(OH)4]2·2H2O的合成、结构以及热力学性质

利用水热法合成了两种过渡金属配合物为模板剂的含水硼酸盐晶体Co(en)3[B4O5(OH)4]Cl·3H2O(1) 和 [Ni(en)3][B5O6(OH)4]2·2H2O (2),并通过元素分析、X射线单晶衍射、红外光谱及热重分析对其进行了表征。化合物1晶体结构的主要特点是在所有组成Co(en)33+, [B4O5(OH)4]2–, Cl– 和 H2O之间通过O–H…O、O–H…Cl、N–H…Cl和N–H…O四种氢键连接形成网状超分子结构。化合物2晶体结构的特点是[B5O6(OH)4]–阴离子通过O–H…O氢键连接形成沿a方向有较大通道的三维超分子骨架,模板剂[Ni(en)3]2+阳离子和结晶水分子填充在通道中。     

Synthesis and crystal structure of 2-{5-[2-(2,6-dichlorophenylamino)benzyl]-4-p-tolyl-4H-1,2,4-triazol-3-ylthio}acetate

The compound 2-{5-[2-(2,6-dichlorophenylamino)benzyl]-4-p-tolyl-4H-1,2,4-triazol-3-ylthio}acetate has been prepared and characterized by IR, ¹H NMR, ¹³C NMR and mass spectra. The crystal and molecular structure were further confirmed using single crystal X-ray diffraction. The crystal structure has been found to be stabilized by intermolecular C–H···O interaction generating bifurcated hydrogen bonds whereas the C–H···N interactions generate chain of molecules. The intramolecular N–H···N hydrogen bond forms a ring with S(7) graph-set motif.     

Synthesis,structures, and urease inhibition of nickel(II), zinc(II), and cobalt(II) complexes with similar hydroxy-rich Schiff bases

Four new nickel(II), zinc(II), and cobalt(II) complexes, [Zn(L¹)₂]?·?H₂O (1), [Ni(L¹)₂]?·?H₂O (2), [Ni(L²)₂] (3), and [Co(L³)₂]?·?H₂O (4), derived from hydroxy-rich Schiff bases 2-{[1-(5-chloro-2-hydroxyphenyl)methylidene]amino}-2-methylpropane-1,3-diol (HL¹), 2-{[1-(2-hydroxy-3-methoxyphenyl)methylidene]amino}-2-ethylpropane-1,3-diol (HL²), and 2-{[1-(5-bromo-2-hydroxyphenyl)methylidene]amino}-2-methylpropane-1,3-diol (HL³) have been synthesized and characterized by elemental analyses, infrared spectroscopy, and single-crystal X-ray determination. Each metal in the complexes is six-coordinate in a distorted octahedral coordination. The Schiff bases coordinate to the metal atoms through the imino N, phenolate O, and one hydroxyl O. In the crystal structures of HL¹ and the complexes, molecules are linked through intermolecular O–H···O hydrogen bonds, forming 1-D chains. The urease inhibitory activities of the compounds were evaluated and molecular docking study of the compounds with the Helicobacter pylori urease was performed.     

Binuclear paddle-wheel platinum(II) and platinum(III) complexes containing 4-methyl-4H-1,2,4-triazole-3-thiol ligand: Synthesis,X-ray studies,and spectroscopic characterization

The complex [Pt₂(μ-mtrzt)₄(mtrzt)₂] (1) was synthesized from the reaction of a mixture of 4-methyl-4H-1,2,4-triazole-3-thiol (Hmtrzt) and ethylenediamine (en) with K₂PtCl₄ in CH₃OH/H₂O (2:1) as solvent. The complex [Pt₂(μ-mtrzt)₄] (2) was synthesized by the same procedure as described for preparation of complex 1 but in the absence of ethylenediamine. Both complexes were characterized by elemental analysis, IR,¹H NMR,¹³C{¹H}NMR, UV-Vis, as well as luminescence spectroscopy and their structures were analyzed by single-crystal X-ray diffraction method. The X-ray structure determinations show that complexes of 1 and 2 have binuclear structures in a paddle-wheel fashion with Pt-Pt distances of 2.6628(7) and 2.7977(16)Å, respectively. In complex 1, each platinum(III) atom has a distorted octahedral coordination geometry with the sulfur atom and the second platinum subunit in axial positions and two nitrogen and two sulfur atoms in equatorial positions. Also, in complex 2, each platinum(II) atom has a distorted square-pyramidal coordination geometry with the second platinum subunit in axial position and two nitrogen and two sulfur atoms in equatorial positions. In addition, intermolecular C?H···N and C?H···S hydrogen bonds in 1 and 2 as well as intermolecular anagostic C?H···Pt and C?H···π interactions in 2 are effective in the stabilization of the crystal packing of these complexes.     

Two Heteroleptic Zinc(II) Complexes: [Zn(phen)(C9H15O6)2] and [Zn2(phen)2(H2O)2(C10H16O4)2] · 3H2O

Reactions of a freshly prepared Zn(OH)_2‐2x(CO₃)x · yH₂O precipitate, phenanthroline with azelaic and sebacic acid in CH₃OH/H₂O afforded [Zn(phen)(C₉H₁₅O₄)₂] ( 1 ) and [Zn₂(phen)₂(H₂O)₂(C₁₀H₁₆O₄)₂] · 3H₂O ( 2 ), respectively. They were structurally characterized by X‐ray diffraction methods. Compound 1 consists of complex molecules [Zn(phen)(C₉H₁₅O₄)₂] in which the Zn atoms are tetrahedrally coordinated by two N atoms of one phen ligand and two O atoms of different monodentate hydrogen azelaato groups. Intermolecular C(alkyl)‐H···π interactions and the intermolecular C(aryl)‐H···O and O‐H···O hydrogen bonds are responsible for the supramolecular assembly of the [Zn(phen)(C₉H₁₅O₄)₂] complexes. Compound 2 is built up from crystal H₂O molecules and the centrosymmetric binuclear [Zn₂(phen)₂(H₂O)₂(C₁₀H₁₆O₄)₂] complex, in which two [Zn(phen)(H₂O)]²⁺ moieties are bridged by two sebacato ligands. Through the intermolecular C(alkyl)‐H···O hydrogen bonds and π‐π stacking interactions, the binuclear complex molecules are assembled into layers, between which the lattice H₂O molecules are sandwiched. Crystal data: ( 1 ) C2/c (no. 15), a = 13.887(2), b = 9.790(2), c = 22.887(3)Å, β = 107.05(1)°, U = 2974.8(8)ų, Z = 4; ( 2 ) P1¯ (no. 2), a = 8.414(1), b = 10.679(1), c = 14.076(2)Å, α = 106.52(1)°, β = 91.56(1)°, γ = 99.09(1)°, U = 1193.9(2)ų, Z = 1.     

A Co(III) complex with a tridentate amine-imine-oxime ligand from 1,2,3,4-tetrahydroquinazoline: synthesis,crystal structure,spectroscopic and thermal characterization

A cobalt(III) complex [Co(L)₂]Cl · PPO · H₂O (1) (HL = 1-(2-aminobenzylimino)-1-phenyl-propan-2-one oxime, PPO = 1-phenyl-1,2-propanedione-2-oxime) has been synthesized and characterized by elemental analyses, spectral, thermal, magnetic and molar conductance measurements and single crystal X-ray diffraction. It crystallizes in the monoclinic crystal system, space group P2₁/c. Complex 1 consists of one uncoordinated water, one 1-phenyl-1,2-propanedione-2-oxime molecule, one bis[1-(2-aminobenzylimino)-1-phenyl-propan-2-one oxime]cobalt(III) cation and one uncoordinated chloride. The coordination geometry around Co is slightly distorted octahedral, completed with six nitrogens of two L^? ligands. The oxime moieties have E configurations. In the crystal structure, intramolecular O–H···Cl and N–H···O and intermolecular N–H···O, O–H···Cl and N–H···Cl hydrogen bonds link the molecules into chains parallel to the c axis; hydrogen-bonded PPO molecules fill the spaces between the chains and stabilization of the structure.     

Synthesis,characterization and antimicrobial activity of five metal complexes of N -acetyl-9-hydroxyl-fluorene-9-hydrazide

Five mononuclear metal (Mn, Co, Ni, Cu, Zn) complexes have been prepared using a monoanionic tridentate ligand N-acetyl-9-hydroxyl-fluorene-9-hydrazidate (ahfhz^?) and characterized by elemental analysis, ESI-MS, IR, UV, ¹H NMR and ¹³C NMR. Antibacterial screening data showed that the cobalt and copper complexes and Hahfhz have moderate antimicrobial activity. The five metal complexes have some antagonistic effect against the ligand to Gram⁺ bacteria Staphylococcus aureus and Bacillus subtilis. The decrease in the efficiency of metal complexes may be assigned to the zero charge of the central core. [Co(ahfhz)₂] ·?2CH₃OH (3) crystallizes in monoclinic system with space group P2₁ /n, a =?13.1379(7) Å, b =?17.7809(10) Å, c =?14.7403(8) Å, β =?110.0580(10)°; in the crystal structure packing N–H ··· O, O–H ··· O and C–H ··· π?hydrogen bonding interactions lead to a supramolecular structure.     

PM3 semiempirical study and its comparison with X-ray crystal structure of 2-methyl-4-(4-methoxyphenylazo)phenol

The crystal and molecular structure of 2-methyl-4-(4-methoxyphenylazo)phenol have been determined by X-ray single crystal diffraction technique. The compound crystallizes in the monoclinic space group P2₁/c with a=9.7763(8) Å, b=11.3966(8) Å, c=11.9531(8) Å and β=108.752(6)°. In addition to the molecular geometry from X-ray experiment, its optimized molecular structure has been obtained with the aid of PM3 semiempirical quantum mechanical method, and then the corresponding geometric parameters were compared with those of X-ray crystallography. To determine conformational flexibility and crystal packing effects on the molecules, molecular energy profile of the title compound was obtained with respect to two selected degrees of torsional freedom, which were varied from ?180° to +180° in steps of 10°. Crystal structure of the title compound is a fibroid structure constructed by C–H···O and O–H···N type intermolecular hydrogen bonds. The most favorable conformer of the title compound has been determined by the crystal packing effects and there is no steric hindrance during rotation around the selected torsion angles.     

Intermolecular complexes of nido-C<Subscript>2</Subscript>B<Subscript>3</Subscript>H<Subscript>7</Subscript> with HF and LiH molecules: the theoretical studies,bonding properties and natural bond orbital (NBO) analysis

The changes in stabilization energy upon the formation of intermolecular hydrogen, dihydrogen and lithium bond complexes between C₂B₃H₇, LiH and HF have been investigated using MP2 method with aug-cc-pVDZ basis set. The interaction of HF with nido-C₂B₃H₇ could occur through the formation of B–H^?δ···^+δH–F, C–H^+δ···F^?δ–H and B–C···H–F classical and non-classical hydrogen bonds. The B–C bonds in backbone of the C₂B₃H₇ as electron donor interact with σ* orbital of HF as electron acceptor. Also interaction of LiH with nido-C₂B₃H₇ resulted in B–C···Li–H and B–H···LiH lithium bonds as well as C–H···H–Li dihydrogen bond complexes. In some of these complexes, LiH interacts with B–C bonds. Results are indicating that more stable complexes belong to interaction of HF and LiH with backbone of the nido-C₂B₃H₇. The AIM and NBO methods were used to analyze the intermolecular interactions; also the electron density at the bond critical point and the charge transfer of obtained complexes were studied.     

C–H···Onitrate synthon assisted molecular assembly of hydrogen bonded Ni(II) and Cu(II) complexes

Two Schiff base metal complexes [Cu–SPETN·NO₃ (1) and Ni–SPETN·NO₃ (2) [SPETN?=?2,2′-[propane,1,3-diylbis(nitrilomethyldyne)pyridyl,phenolate]] with hydrogen bonding groups have been synthesized and characterized by single-crystal X-ray diffraction. In both of the compounds nitrates occupy a crystallographic general position. In 1 the lattice nitrates are on the 2₁ screw axis while in 2 they are at the crystallographic inversion center. C–H···O_nitrate synthons (formed by the nitrate anions and peripheral hydrogen bonding groups of the metal complexes) are non-covalent building blocks in molecular-assembly and packing of the cationic Schiff base metal complexes (M?=?Ni²⁺, Cu²⁺), resulting in 2-D hydrogen bonded networks. The Cu···Cu non-bonding contact in 1 is 3.268?Å while the Ni–Ni bonding distance in 2 is 3.437?Å.     

Hydrogen bonded networks based on Ni(II)-tetraazamacrocycle (tet-b) complexes: synthesis,isolation and structural characterization of α -[Ni(tet-b)(Cl)](ClO4) and α -[Ni(tet-b)(en)](ClO4)2

Five- and six-coordinate, α-[Ni(tet-b)(Cl)](ClO₄) (1) and α-[Ni(tet-b)(en)](ClO₄)₂ (2) (tet-b?= C-racemic-5,5,7,12,12,14-hexamethyl-1,4,8,11-tetraazacyclotetradecane) complexes have been synthesized and isolated from the reactions of α-[Ni(tet-b)](ClO₄)₂, which has trans-V (1R,4R,8R,11R,7S,14S or 1S,4S,8S,11S,7R,14R) conformation, with t-Bu₄NCl and ethylenediamine (en), respectively. The complexes have been characterized by X-ray crystallography. The crystal structure of 1 shows a distorted trigonal bipyramidal (TBP) coordination geometry composed of four nitrogen atoms from tet-b and a chloro group with an N₄Cl chromophore about the nickel(II) ion. The complex cations of 1 are assembled by the perchlorate ions via N–H?···?O hydrogen bonding to form 1-D zigzag chains along the [001] direction. The chains are linked through intermolecular hydrogen bonding where the coordinated chloro group of the complex cation forms two-center double hydrogen bonds with the adjacent N–H groups of the macrocyclic ligand along the [100] direction, resulting in a two-dimensional α-network. The crystal structure of 2 shows a distorted octahedral coordination environment consisting of four nitrogen atoms from tet-b and two from en with an N₆ chromophore about nickel(II) ion. The crystal packing analysis shows that the complex cations, α-[Ni(tet-b)(en)]²⁺ are interconnected by perchlorate ions through conventional two-center (N)H?···?O, and bifurcated (N)H?···?O?···?H(N) hydrogen bonding.     

Spectroscopic studies and crystal structure of a dimeric Zn(II) complex with diethyl (pyridin-2-ylmethyl)phosphate

The crystal structure of [Zn₂(2-pmOpe)₂Cl₄] (2-pmOpe?=?diethyl (pyridin-2-ylmethyl)phosphate) was determined by X-ray-diffraction method. The compound was also characterized by IR, far-IR, 1H, and ³¹P NMR spectroscopy. In this compound, 2-pmOpe is a bidentate N,O-bridging ligand and Zn(II) are slightly distorted tetrahedral ZnNOCl₂. Zn(II) ions are doubly bridged by the 2-pmOpe ligands, resulting in a dinuclear species. The structure is stabilized by intermolecular C–H?···?O and C–H?···?Cl hydrogen bonds. The spectral properties are in agreement with the structural data.     

Lone pair···π interactions on the stabilization of intra and intermolecular arrangements of coordination compounds with 2-methyl imidazole and benzimidazole derivatives

Abstract

Spectroscopic and single crystal X-ray diffraction studies of coordination compounds of Co^II, Ni^II, Zn^II, and Pd^II with phenylsulfonyl imidazole and benzimidazole derivatives (2-mfsiz, 2-mfsbz) were performed. The relevance of non-covalent interactions on the stabilization of intra and intermolecular arrangements in the ligands and their coordination compounds was investigated. The imidazole 2-mfsiz ligand presents two enantiomeric conformers, where the ethylphenylsulfone moiety stabilizes intermolecular lone pair···π (S–O···π_(phe)) and H···π contacts, while its tetrahedral coordination compounds, [M(2-mfsiz)₂X₂] (M²⁺?=?Co, Ni, Zn; X?=?Cl, Br) showed intramolecular lone pair···π interactions (S–O···π_(iz)). On the other hand, compounds [Cu₂(2-mfsiz)₂(µ₂-AcO)₄] and trans-[Pd(2-mfsiz)₂Cl₂] do not present lone pair···π interactions due to the metal ion geometry (square base pyramidal or square planar), which leads to formation of π_(iz)···π_(phe) interactions. For the benzimidazole ligand 2-mfsbz, an intramolecular, H_(phe)···π_(bz) contact was observed, remaining in its tetrahedral and octahedral coordination compounds, [M(2-mfsbz)₂X₂] (M²⁺?=?Co, Zn; X?=?Cl, Br, NO₃). This interaction limits the free rotation of the ethylphenylsulfone moiety for stabilization of an intermolecular lone pair···π interaction (S–O···π_(iz)). The dimeric [Zn₂(2-mfsiz)₂(µ²-AcO)₄] compound has a π_(bz)···π_(phe) contact. Theoretical calculations confirmed the non-covalent interactions in the ligands and their coordination compounds.     

N‐[(R)‐1‐(2‐Hydr­oxy‐5‐methyl­phen­yl)­eth­yl]‐N‐[(R)‐1‐(2‐meth­oxy‐5‐methyl­phen­yl)‐2‐phenyl­eth­yl]aminium chloride

The title compound, C₂₅H₃₀NO₂⁺·Cl⁻, has been synthesized, and the crystal structure shows that it is mainly stabilized through inter­molecular N—H·Cl and O—H·Cl and intra­molecular N—H·O hydrogen bonds. The absolute configuration of the new stereogenic center (the C atom adjacent to the N atom on the phenol side) was determined to have an R configuration.