Amino acids and peptides. XXXV. Facile preparation of p-nitroanilide analogs by the solid-phase method

p-Nitroanilides of amino acids and peptides are widely used as the chromogenic substrates for the determination of the activity of proteolytic enzymes. However, the preparation of a p-nitroanilide is not easy, in part due to the low nucleophilicity of the amino group of p-nitroaniline. A facile preparation of p-nitroanilide analog by the solid-phase method was investigated. 5-Amino-2-nitrobenzoic acid (Anb5,2) was used instead of p-nitroaniline (pNA) for preparation of p-nitroanilide analogs. Anb5,2 was introduced on a p-methylbenzhydrylamine resin without protection of the amino group of Anb5,2 by the 2-(H-benzotriazol-1-yl)-1,1,3,3-tetramethyluronium tetrafluoroborate (TBTU) method in the presence of p-dimethylaminopyridine. The coupling reaction of a Nalpha-,NG-protected arginine with a Anb5,2-resin was difficult to achieve by common coupling methods (such as the carbodiimide and diphenylphosphoryl azide methods), but the phosphoryl chloride method was relatively successful. Synthetic benzoyl-Arg-Anb5,2-NH2 and benzoyl-Arg-pNA were hydrolyzed by trypsin and the both reaction mixtures exhibited same spectroscopic characteristics. H-D-Val-Leu-Arg-Anb5,2-NH2, an analog of human urine kallikrein substrate, was readily prepared by the solid-phase method. H-Arg-Anb5,2-OH and H-D-Val-Leu-Arg-Anb5,2-OH were also synthesized on a Wang resin by the solid-phase method. The aqueous solubility of these free-carboxyl materials was better than those of the corresponding amide analogs. 4-Amino-3-nitrobenzoic acid (Anb4,3) was also introduced on the p-methybenzhydrylamine resin, but the resulting H-Anb4,3-resin did not react with Nalpha,NG-protected arginine by any of the coupling methods.     

Facile solid phase synthesis of N-cycloguanidinyl-formyl peptides

A novel strategy of solid phase synthesis of N-cycloguanidinyl-formyl peptides has been established and investigated which involved coupling orthogonal protected diaminoacid with resin bound peptide, α-amino group deprotection, guanidinylation of α-amino group by bis-Cbz-1H-pyrazole-1-carboxamidine followed by cleavage and cyclization in solution, and finally removing Cbz by palladium catalyzed hydrogenation. Through this method, cycloguanidine could be introduced to either N-terminus or sidechain of designated peptides. The reaction conditions were facile, straightforward, and totally adaptive to common solid phase peptide synthesis strategy.     

Amino acids and peptides. XXV. Application of newly developed beta-1- and beta-2-adamantylaspartates to peptide synthesis by solid phase and conventional solution methods

Newly developed beta-1- and beta-2-adamantylaspartates [H-Asp(O-1-Ada)-OH and H-Asp(O-2-Ada)-OH] were applied to the synthesis of a C-terminal octapeptide of the beta-subunit of human chorionic gonadotropin (hCG) by a conventional solution method and a hexacosapeptide of the alpha-subunit of insulin receptor (30-55) by a solid-phase method with the objective of suppressing aspartimide formation during the synthesis of aspartylpeptides. The 1-Ada and 2-Ada groups were confirmed to be useful protecting groups for the beta-carboxyl function of the Asp residue.     

ChemMatrix, a poly(ethylene glycol)-based support for the solid-phase synthesis of complex peptides

CM (ChemMatrix) resin is a new, totally poly(ethylene glycol) (PEG)-based resin, made exclusively from primary ether bonds and, therefore, highly chemically stable. It exhibits good loading and is user-friendly because of its free-flowing form upon drying. It performs excellently for the preparation of hydrophobic, highly structured, and poly-Arg peptides, as compared to polystyrene (PS) resins. In the most striking example, stepwise solid-phase assembly of the highly complex beta-amyloid (1-42) peptide resulted in a crude material of 91% purity. In contrast, literature procedures using PS or PEG-PS-based resins for this peptide required convergent approaches, additional time-consuming steps, or both. In addition to the difficulties of its synthesis, characterization of the beta-amyloid (1-42) peptide as a monomer is also a challenge, and methods for characterization by HPLC and MALDI-TOF have also been developed.     

Associative diblock copolymers of poly(ethylene glycol) and coiled-coil peptides

A series of peptides of general primary structure (VSSLESK)_n (n = 2, 3, 4, 5 and 6) were designed and synthesized by fluorenylmethyloxycarbonyl solid-phase synthesis using a convergent approach. Peptides containing 21, 28, 35 and 42 residues were modified with α-methoxy poly(ethylene glycol) (mPEG; mol. wt. 2000) by reaction of mPEG–succinimidyl carbonate with the α-amino group of the resin-attached protected peptides. The conformation and thermal stability of the peptides and of their AB block copolymers (A is the mPEG block, B the (VSSLESK)_n block) in aqueous medium were investigated by circular dichroism, size-exclusion chromatography and by analytical ultracentrifugation. The helicity of peptides increased with increasing length in a cooperative manner. The peptides and mPEG–peptides with 35 and 42 amino acid residues (block copolymers) adopted a two-stranded α-helical coiled-coil conformation in aqueous solution. The presence of the polymer chain in the diblock hybrid copolymers had no disturbing effect with respect to the stability of the α-helical peptide part in these constructs. Moreover, the thermal stability of mPEG-modified 42-peptide was substantially higher than that of the native 42-peptide. Analytical ultracentrifugation data revealed that in phosphate-buffered saline solution (25–200 μM ) the block copolymer mPEG-block-(VSSLESK)₆ ( PEG42 ) associated into stable intermolecular coiled-coil dimers.

Thermal melting profiles of peptides and mPEG–peptides at concentration 0.4 g · L⁻¹ in PBS. Molar ellipticity at 222 nm versus temperature. Heating rate 0.5 °C · min⁻¹.     

Amino acids surrogates: an indirect method for the synthesis of peptides containing the thioasparaginyl residue

The protected pentapeptide, Boc-Tan-Cys(PMB)-Pro-Leu-GlynH₂¹ and related thioasparaginyl compounds were prepared by an indirect method from their corresponding β-cyanoalanyl precursors by treatment with H₂S/NH₃. The optical purities of thioasparagine (Tan) derivatives were evaluated by two different approaches.     

Diffusion and phase behavior of a hydroxypropylcellulose-poly(ethylene glycol) system

The solubility and interdiffusion between hydroxypropylcellulose samples of various molecular masses (M _w = 8 × 10⁴, 14 × 10⁴, 37 × 10⁴, 85 × 10⁴, and 115 × 10⁴) and poly(ethylene glycol) (M _w = 400 and 1500) in the range 18–210°C have been studied by optical interferometry and polarization microscopy methods. Oligomeric poly(ethylene glycols) have been considered as solvents for hydroxypropylcellulose. Phase diagrams have been constructed, and Flory-Huggins thermodynamic interaction parameters have been calculated. For the hydroxypropylcellulose-poly(ethylene glycol) 400 system, an LC and crystalline equilibria have been realized. An increase in the M _w of hydroxypropylcellulose to 1500 leads to the appearance of a wide region of amorphous phase segregation with a UCST, whereas the liquidus line is conserved at high concentrations of hydroxypropylcellulose. Such a superposition of two kinds of phase equilibrium that is achieved only with a change in M _w of the oligomeric solvent has been observed for the first time. For all the systems under examination, the kinetics of diffusion mixing has been estimated and the activation energies of the process have been calculated. The concentration dependences of diffusion coefficients demonstrate jumps in the mesomorphic-transition region.     

Kinetics of poly(ethylene terephthalate) glycolysis by diethylene glycol. I. Evolution of liquid and solid phases

The kinetics of uncatalysed glycolysis, at 220 °C, of poly(ethylene terephthalate) (PET) by diethylene glycol (DEG) in high excess has been studied. An experimental device allowing good separation, at reaction temperature, of the solid and liquid phases was set up.The results suggest that PET is initially depolymerized in the slightly swollen solid phase, by glycolysis of the amorphous interlamellar chains. This mechanism continues until a solid phase of highly crystallized polyester is obtained.The internal tensions engendered by this chemical modification cause cracks, delamination and mechanical disintegration of the polymer. The transfer towards the liquid phase is then strongly accelerated and the solvolysis of the depolymerization products continues in the liquid phase, up to equilibrium.     

Expanding the accessible chemical space by solid phase synthesis of bicyclic homodetic peptides

Norbornapeptides (bicyclo[2.2.1]heptapeptides) and related bicyclic homodetic peptides were prepared by solid-phase peptide synthesis using an orthogonal protection scheme. These conformationally rigid peptides cover an almost pristine area of peptide topological space and adopt globular shapes similar to those of short α-helical peptides.     

Facile polyethylene glycol (PEG-400) promoted synthesis of β-ketosulfones

An efficient and convenient synthesis of β-ketosulfones is described. Reaction of an α-haloketone with sodium alkyl/aryl sulphinate yields the corresponding β-ketosulfone promoted by polyethylene glycol (PEG-400) as an efficient reaction medium.     

Facile construction of sulfanyl-terminated poly(ethylene glycol)-brushed layer on a gold surface for protein immobilization by the combined use of sulfanyl-ended telechelic and semitelechelic poly(ethylene glycol)s

A sulfanyl-terminated poly(ethylene glycol) (PEG)-brushed layer was constructed on a gold sensor platform by consecutive treatment with a sulfanyl-ended semitelechelic PEG (2 kDa, hereafter "MeO-PEG-SH (2k)") and a sulfanyl-ended telechelic PEG (5 kDa, hereafter "SH-PEG-SH (5k)"). Our strategy of constructing the sulfanyl-terminated PEG-brushed gold surface is based on mixed-PEG-brush formation from the longer SH-PEG-SH (5k) and the shorter MeO-PEG-SH (2k), where the preimmobilized shorter MeO-PEG-SH (2k) prevents loop formation in the longer SH-PEG-SH (5k) on the surface and the free sulfanyl group at one end of the longer SH-PEG-SH is exposed to the mixed-PEG tethered-chain surface. From the experimental results obtained from surface plasmon resonance analysis, it became apparent that the immobilization density and the orientation of the longer SH-PEG-SH (5k) on the gold surface could be controlled by the amount of preimmobilized shorter MeO-PEG-SH (2k). Under the optimized conditions of MeO-PEG-SH (2k) premodification, the constructed MeO-PEG-SH (2k)/SH-PEG-SH (5k) mixed layer conjugated efficiently with the maleimide-installed proteins and the antibody Fab' fragments, accompanied by an appreciable nonfouling characteristic against bovine serum albumin as strong as that of the MeO-PEG-SH (5k)/MeO-PEG-SH (2k) mixed surface, which was reported in our previous work; it also showed a superior nonfouling characteristic compared to the commercially available carboxymethylated dextran surface (Uchida, K.; et al. Biointerphase 2007, 2 (4), 126-130). Furthermore, from the experimental results of the X-ray photoelectron spectrometry analysis, the presence of both Au-bound and Au-unbound sulfur species was confirmed on the SH-PEG-SH (5k)/MeO-PEG-SH (2k)-modified gold surface. These results clearly indicate that the preimmobilized shorter MeO-PEG-SH (2k) not only increased the nonfouling characteristic of the PEG tethered-chain surface but also prevented loop formation in the longer SH-PEG-SH (5k) on the gold surface. Since the protein-installed SH-PEG-SH (5k)/MeO-PEG-SH (2k)-modified surface showed a strongly nonfouling characteristic and recognized the target molecules selectively, this new mixed-brush-formation technique using longer sulfanyl-ended telechelic PEGs and shorter semitelechelic PEGs is a simple yet effective method of constructing a strongly nonfouling terminal-functionalized gold surface for protein immobilization.     

Erythrocyte partitioning in dextran-poly(ethylene glycol) aqueous phase systems. Events in phase and cell separation.

Early events in the partitioning process which involve characteristic kinetics of cell- and phase-specific interactions and phase separation have been described previously. This paper reports on red cell-phase droplet interactions pertaining at the time of usual phase sampling (i.e., the time at which a clear bulk interface is first apparent) and beyond in cell partitioning and countercurrent distribution experiments. In non-charge-sensitive phase systems close to the critical point, cells can be free or attached to phase droplets. Cells that are free are virtually completely in the top phase, whereas different cell populations that show essentially complete binding to droplets can nevertheless have different partition ratios and be separated, thus reflecting the effects of the difference in the cells' avidity for the phase droplets during the early, elapsed events in partitioning. At higher polymer concentrations (i.e., higher interfacial tensions), the cell populations, completely bound to phase droplets, partition completely to the interface, and consequently cannot be separated. When such systems are made charge-sensitive by the generation of a Donnan potential between the phases or made into affinity systems by the incorporation of PEG ligands (e.g., PEG-palmitate), there is a decrease in the avidity of the cells for phase droplets. The resulting increase in the ratio of free to droplet-bound red cells in the top phase at the time of sampling correlates with an increase in the partition ratio, P, observed.(ABSTRACT TRUNCATED AT 250 WORDS)     

Solubility of amino acids in aqueous poly (ethylene glycol) solutions

The solubilities of amino acids have been measured in water and aqueous poly(ethylene glycol) (PEG) solutions as a function of temperature and PEG concentration. The free energies of transfer from water to aqueous PEG solutions forl-alanine,l-valine,l-isoleucine andl-leucine were positive, while those forl-phenylalanine andl-tryptophan were negative. The corresponding enthalpies of transfer were almost zero for all amino acids. The equilibrium constants of the binding of amino acids to PEG chain were estimated from the solubility data. Amino acids with larger hydrophobicity are bound more strongly to the PEG chain due to the hydrophobic interaction between the methylene groups of PEG and the side chain of amino acid. The equilibrium constants showed a correlation with the dynamic hydration number (n _DHN) which expresses the hydration properties of amino acids in aqueous solution.     

Modulating the activity of oligonucleotides by carbohydrate conjugation: solid phase synthesis of sucrose-oligonucleotide hybrids

In order to expand the repertoire of available oligosaccharide-oligonucleotide hybrids, the on-line solid phase synthesis of oligonucleotides conjugated at the 3'-and/or 5'-end with a preformed disaccharide unit has been performed. The key compound in the synthetic scheme described here is an appropriate phosphoramidite derivative of fully protected sucrose, used in association with a solid support functionalized with DMT-protected sucrose. The sucrose units at both ends of selected oligonucleotide sequences were shown to increase their chemical and enzymatic stability, while not interfering with duplex formation and with the ability of G-rich sequences to adopt a quadruplex structure.     

Efficient and direct solid phase synthesis of ketomethylenimino and ketomethylenamino peptides

The aim of this study is the synthesis of pseudopeptides on solid supports, in order to quickly obtain modified peptides. We report a convenient step-by-step synthesis of ketomethylenimino ψ[CO-CHN] and ketomethylenamino ψ[CO-CH₂-NH] peptides. The key is the reaction between the free amino terminus of the supported peptide and a glyoxal-modified amino acid, leading to a ketomethylenimino bond, which can be reduced to a ketomethylenamino bond.     

One step synthesis of C-dots by microwave mediated caramelization of poly(ethylene glycol)

A rapid, simple and one step microwave mediated method for synthesizing C-dots using poly(ethylene glycol) (PEG) as a precursor and passivating agent is reported. The C-dots possessed low cytotoxicity, were amenable to separation by electrophoresis, photostable and entered cancer cells, making them suitable candidates for bioimaging and biolabelling.