An improved 33S nuclear magnetic shielding scale from the gas‐phase study of COS

The ³³S NMR signal of gaseous carbonyl sulfide (COS) was monitored as a function of density for the first time. An extrapolation to the zero‐density limit permitted the measurement of nuclear magnetic shielding of an isolated COS molecule. An improved ³³S shielding scale was established taking the value of 817(12) ppm as the absolute shielding of COS. The new ³³S shielding scale is certainly more accurate than any previous estimation and contains some reference standards, e.g. an isolated SF₆ molecule, a saturated solution of (NH₄)₂SO₄ in D₂O, 2 M aqueous Cs₂SO₄ solution or liquid SF₆, CS₂ and SO₂. The latter results can be applied for the easy estimation of sulfur shielding available from all the measurements of ³³S NMR chemical shifts. Copyright © 2002 John Wiley & Sons, Ltd.     

33S NMR spectra of sulfonium salts: calculated and experimental

33S NMR chemical shifts were calculated by the scaled DFT and EMPI approaches for the fluoride, chloride and bromide of trimethylsulfonium ion (1) and S-methyltetrahydrothiophenium ion (2), in addition to the free cations. Experimental values were obtained for the iodides of 1 (delta +48, CS2 = 0 ppm) and 2 (delta +95), and were found to agree with the calculated values well within the standard deviation of 35 ppm (3.5% of the shielding range) established in earlier work for a great variety of sulfur compounds. An earlier literature value of delta +750 for the iodide of 2 is therefore to be replaced. Calculations provide a shift of delta +68 for S-methylthianium ion with equatorial methyl, indicating that the reported value of delta +670 for the iodide is also incorrect.     

Solvent effects on 17O nuclear magnetic shielding: N-methylformamide in polar and apolar solutions

The solvent effect on ¹⁷O isotropic shielding was computed by different methods: the polarizable continuum model and a mixed approach, including a few real solvent molecules treated as the solute. The experimental data show that the behavior of protic and aprotic solvents is markedly different: we found that the continuum approach describes well the observed shielding at various dielectric constants for aprotic solvents, while the mixed procedure is needed when hydrogen bonds to the magnetic centre are present.Contribution to the Jacopo Tomasi Honorary Issue     

Contributions from atomic p(Se), d(Se), and f(Se) orbitals to absolute paramagnetic shielding tensors in neutral and charged SeHn and some oxides including the effect of methyl and halogen substitutions on sigmap(Se)

Contributions from atomic p(Se), d(Se), and f(Se) orbitals to sigmap(Se) are evaluated for neutral and charged Se*Hn (*=null, +, or -) and some oxides to build the image of the contributions. The effect of methyl and halogen substitutions is also examined employing RrSe*XxOo (*=null, +, or -) where R=H or Me; X=F, Cl, or Br. The p(Se) contributions are larger than 96 % for SeH- (Cinfinityv), SeH2 (C2v), SeH3 + (C3v), SeH3 + (D3h), and SeH4 (Td). Therefore, sigmap(Se) of these compounds can be analyzed based on p(Se). The p(Se) contributions are 79-75 % for SeH4 (TBP), SeH5 + (TBP), SeH5 + (SP), and SeH5 - (SP). Methyl and halogen substitutions increase the contributions by 1-2 % (per Me) and 4-7 % (per X), respectively. The contributions are 92-79 % for H2SeO (Cs), H2SeO2 (C2v), and H4SeO (C2v). The values are similarly increased by the substitutions. Consequently, sigmap(Se) of these compounds can be analyzed based on p(Se) with some corrections by d(Se). The p(Se) contribution of SeH6 (Oh) is 52 %: sigmap(Se: SeH6 (Oh)) must be analyzed based on both p(Se) and d(Se). The contributions for the Me and X derivatives of SeH(6) amount to 86-77 %. Therefore, sigmap(Se) of the derivatives can also be analyzed mainly based on p(Se) with some corrections by d(Se). Contributions from f(Se) are negligible. Contributions from 4p(Se) in vacant orbitals are also considered. A utility program derived from the Gaussian 03 (NMRANAL-NH03G) is applied to evaluate the contributions.     

The vibrational and NMR spectra,conformations and ab initio calculations of aminomethylene,propanedinitrile and itsN-methyl derivatives

The IR and Raman spectra of aminomethylene propanedinitrile (AM) [H₂N-CH=C(CN)₂], (methylamino)methylene propanedinitrile (MAM) [CH₃NH-CH=C(CN)₂] and (dimethylamino)methylene propanedinitrile (DMAM) [(CH₃)₂N-CH=C(CN)₂] as solids and solutes in various solvents have been recorded in the region 4000-50 cm^–1. AM and DMAM can exist only as one conformer. From the vibrational and NMR spectra of MAM in solutions, the existence of two conformers with the methyl group orientedanti andsyn toward the double C=C bond were confirmed. The enthalpy difference H ⁰ between the conformers was measured to be 3.7±1.4 kJ mol^–1 from the IR spectra in acetonitrile solution and 3.4±1.1 kJ mol^–1 from the NMR spectra in DMSO solution. Semiempirical (AM1, PM3, MNDO, MINDO3) and ab initio SCF calculations using a DZP basis set were carried out for all three compounds. The calculations support the existence of two conformersanti andsyn for MAM, withanti being 7.8 kJ mol^–1 more stable thansyn from ab initio and 8.6, 13.4, 11.6, and 10.8 kJ mor^–1 from AM1, PM3, MNDO, and MINDO3 calculations, respectively. Finally, complete assignments of the vibrational spectra for all three compounds were made with the aid of normal coordinate calculations employing scaled ab initio force constants. The same scale factors were optimized on the experimental frequencies of all three compounds, and a very good agreement between calculated and experimental frequencies was achieved.     

Structures and vibrational spectra of the sulfur-rich oxides SnO (n = 4-9): the importance of pi*-pi* interactions

The structures of a large number of isomers of the sulfur oxides S(n)O with n = 4-9 have been calculated at the G3X(MP2) level of theory. In most cases, homocyclic molecules with exocyclic oxygen atoms in an axial position are the global minimum structures. Perfect agreement is obtained with experimentally determined structures of S(7)O and S(8)O. The most stable S(4)O isomer as well as some less stable isomers of S(5)O and S(6)O are characterized by a strong pi*-pi* interaction between S==O and S==S groups, which results in relatively long S--S bonds with internuclear distances of 244-262 pm. Heterocyclic isomers are less stable than the global minimum structures, and this energy difference approximately increases with the ring size: 17 (S(4)O), 40 (S(5)O), 32 (S(6)O), 28 (S(7)O), 45 (S(8)O), and 54 kJ mol(-1) (S(9)O). Owing to a favorable pi*-pi* interaction, preference for an axial (or endo) conformation is calculated for the global energy minima of S(7)O, S(8)O, and S(9)O. Vapor-phase decomposition of S(n)O molecules to SO(2) and S(8) is strongly exothermic, whereas the formation of S(2)O and S(8) is exothermic if n<7, but slightly endothermic for S(7)O, S(8)O, and S(9)O. The calculated vibrational spectra of the most stable isomers of S(6)O, S(7)O, and S(8)O are in excellent agreement with the observed data.     

Dissociation of sulfur oxoacids by two water molecules studied using ab initio and density functional theory calculations

Using ab initio [SCS‐MP2 and CCSD(T)] and density functional theory (M062X) calculations, we have studied the geometries and energies of sulfur oxoacids H₂S_mO₆ (m = 2–4) and their monohydrated and dihydrated clusters. When including the results from previously reported disulfuric acid (H₂S₂O₇) cases, the gas phase acidity is ordered as H₂S₂O₆ < H₂S₃O₆ < H₂S₂O₇ < H₂S₄O₆. The intramolecular H‐bonding, which may indicate the degree of structural flexibility in this molecular series, is an important factor for the order of the gas phase acidity. All these sulfur oxoacids show dissociated (or deprotonated) geometries with only two water molecules, although the energies of the dissociated conformers are ranked differently. All of the dissociated conformers form a unique H‐bonding network structure in which the protonated first water (H₃O⁺) is triply H‐bonded to each oxygen atom of two SO₃ moieties as well as the second water, which in turn is H‐bonded to a SO₃ moiety. H₂S₃O₆ has the best molecular flexibility for adopting such an H‐bonding network structure, and thereby all the low‐lying conformers of H₂S₃O₆(H₂O)₂ are dissociated. In contrast, the least flexible H₂S₂O₆ forms such a structure with a high strain, and dissociation of H₂S₂O₆(H₂O)₂ is found from the third lowest conformer. Although the gas phase acidity of H₂S₄O₆ is the highest in this series, the lowest dissociated conformer and the lowest undissociated conformer of H₂S₄O₆(H₂O)₂ are very close in energy. This is because forming the H‐bonding network structure is somewhat difficult due to the large distance between the two SO₃ moieties.     

Nuclear shielding calculations on the primary structure of the gellan polysaccharide

Ab initio, GIAO and IGLO, nuclear shielding calculations are performed on each of the four pyranose ring residues of the tetrasaccharide repeating unit in a single chain of the gellan polysaccharide, [→ 3)- -Glcp-(1 → 4)-β- -GlcpA-(1 → 4)-β- -Glcp-(1 → 4)-- -Rhap(1 _n. The results provide an insight into the effects of the changing primary molecular electronic structure on the calculated ¹³C, ¹⁷O and ¹H shieldings. In particular, the observed trends in the calculated isotropic (σⁱ) shielding values are rationalised withi the framework of the localised molecular orbital shielding contributions and Mulliken population analyses (MPA).     

Solid-state 17O NMR study of the electric-field-gradient and chemical shielding tensors in polycrystalline amino acids

We have presented a systematic experimental investigation of carboxyl oxygen electric-field-gradient (EFG) and chemical shielding (CS) tensors in crystalline amino acids. Three 17O-enriched amino acids were prepared: L-aspartic acid, L-threonine, and L-tyrosine. Analysis of two-dimensional 17O multiple-quantum magic-angle spinning (MQMAS), MAS, and stationary NMR spectra yields the 17O CS, EFG tensors and the relative orientations between the two tensors for the amino acids. The values of quadrupolar coupling constants (CQ) are found to be in the range of 6.70-7.60 MHz. The values of deltaiso lie in the range of 268-292 ppm, while those of the delta11 and delta22 components vary from 428 to 502 ppm, and from 303 to 338 ppm, respectively. There is a significant correlation between the magnitudes of delta22 components and C--O bond lengths. Since C--O bond length may be related to hydrogen-bonding environments, solid-state 17O NMR has significant potential to provide insights into important aspects of hydrogen bonds in biological systems.     

Local structure of highly dispersed lead species incorporated within zeolite: experimental and theoretical studies

XAFS (both XANES and FT-EXAFS) measurements revealed that the Pb²⁺ /ZSM-5 catalyst prepared from precursor H-ZSM-5 by a conventional ion-exchange method includes a highly dispersed 3-fold coordinated Pb²⁺ ion species within the zeolite framework. UV-irradiation of Pb²⁺ /ZSM-5 led to effective decomposition of NO and N₂O producing N₂. The photocatalytic decomposition of NO is found to be slightly preferable than that of N₂O. The isolated Pb²⁺ ions play a significant role in the decomposition of pollutant NO _x . Ab initio and DFT quantum chemical studies at the HF/Lanl2dz and B3PW91/Lanl2dz levels further shed light on local structures of the Pb²⁺ active site of lead-containing zeolites, as well as on their interactions with pollutant NO and N₂O molecules. In agreement with experiments, 3-fold coordination was found to be the most favorable state for the Pb²⁺ site within the zeolite framework.     

The tetrazole–azide tautomerism of some nitrotetrazolo [1,5-a]pyridines studied by NMR, IR spectroscopy and molecular orbital calculations

The 6-nitro- and 8-nitro- groups in the tetrazolo[1,5-a]pyridine molecule exhibit completely different influences on the tetrazole–azide equilibrium. Introduction of the methyl-, nitro-, azido groups or a bromine atom in positions 5, 6, 7 or 8 of the nitrotetrazolopyridine produce changes in the equilibrium constants. Based on the IR spectra taken in the solid state, the tetrazole structure was assigned for almost all the compounds studied. Only one of them, 2,6-diazido-3-nitropyridine, exists in the diazido-form in the solid. The ¹H, ¹³C, ¹⁵N, and ¹⁷O NMR spectral parameters (coupling constants, chemical shifts) as well as ab initio molecular orbital calculations were used to describe the tetrazole–azide tautomerism in solutions. The differences in the NMR parameters between the neutral compound (6,8-dinitrotetrazolo[1,5-a]pyridine) and its σ-adducts are also included as data for distinguishing between both molecules.     

Spectra and structure of organophosphorus compounds: XLIX. Microwave,infrared, and Raman spectra,electric dipole moment,molecular structure,and ab initio calculations of dimethylphosphonothioic fluoride

The microwave spectra of (CH₃)₂PSF, (CH₃)(CD₃)PSF, (CD₃)₂PSF, and (CH₃)₂P³⁴SF have been investigated from 20.0 to 40.0 GHz. Botha-type R branch andc-type Q branch transitions have been measured in the ground states of each isotopic species. From a least-square adjustment to fit 12 rotational constants, the following structural parameters were obtained:r(P–F)=1.582 ± 0.003 Å;r(P=S)=1.902 ± 0.001 Å;r(P-C)=1.800 ± 0.001 Å;r(C-H)=1.088 ± 0.002 Å; HCP=109.28 ± 0.12°; SPF=114.50 ± 0.13°; and SPC=116.33 ± 0.06°. From Stark effect measurements, the dipole moment components have been determined to be ¦ _a ¦ =3.556 ± 0.005; ¦ _c ¦=2.026 ± 0.009; and ¦ _t ¦=4.093 ± 0.009 (D). The Raman spectra (3200 to 100 cm^–1) of each isotopic species have been measured for the solid, and liquid and qualitative depolarization values obtained. Additionally, the mid-infrared spectra (3200 to 500 cm^–1) of the solids have been recorded. Proposed assignments of the normal modes have been made on the basis of Raman depolarization values and group frequencies which are supported by normal coordinate analysis utilizing an ab initio force field. Optimized structural parameters have been obtained with both the 3-21G^* and 6-31G^* basis sets. These results are compared to the corresponding quantities for several similar molecules.For part XLVIII, seeJ. Raman Spectrosc.1922,23, 107.     

Iron–sulfur bond covalency from electronic structure calculations for classical iron–sulfur clusters

The covalent character of iron–sulfur bonds is a fundamental electronic structural feature for understanding the electronic and magnetic properties and the reactivity of biological and biomimetic iron–sulfur clusters. Conceptually, bond covalency obtained from X‐ray absorption spectroscopy (XAS) can be directly related to orbital compositions from electronic structure calculations, providing a standard for evaluation of density functional theoretical methods. Typically, a combination of functional and basis set that optimally reproduces experimental bond covalency is chosen, but its dependence on the population analysis method is often neglected, despite its important role in deriving theoretical bond covalency. In this study of iron tetrathiolates, and classical [2Fe? 2S] and [4Fe? 4S] clusters with only thiolate ligands, we find that orbital compositions can vary significantly depending on whether they are derived from frontier orbitals, spin densities, or electron sharing indexes from “Átoms in Molecules” (ÁIM) theory. The benefits and limitations of Mulliken, Minimum Basis Set Mulliken, Natural, Coefficients‐Squared, Hirshfeld, and AIM population analyses are described using ab initio wave function‐based (QCISD) and experimental (S K‐edge XAS) bond covalency. We find that the AIM theory coupled with a triple‐ζ basis set and the hybrid functional B(5%HF)P86 gives the most reasonable electronic structure for the studied Fe? S clusters. 2014 Wiley Periodicals, Inc.     

Orientational effect of aryl groups on 77Se NMR chemical shifts: experimental and theoretical investigations

The orientational effect of p-YC6H4 (Ar) on delta(Se) is elucidated for ArSeR, based on experimental and theoretical investigations. The effect is examined in the cases in which Se--CR in ArSeR is either in the Ar plane (pl) or is perpendicular to the plane (pd). 9-(Arylselanyl)anthracenes (1) and 1-(arylselanyl)anthraquionones (2) are employed to establish the effect in pl and pd, respectively. Large upfield shifts are observed for Y=NMe2, OMe, and Me, and large downfield shifts for Y=COOEt, CN, and NO2 in 1, relative to Y=H, as is expected. Large upfield shifts are brought by Y=NMe2, OMe, Me, F, Cl, and Br, and downfield shifts by Y=CN and NO2 in 2, relative to Y=H, with a negligible shift by Y=COOEt. Absolute magnetic shielding tensors of Se (sigma(Se)) are calculated for ArSeR (R=H, Me, and Ph), assuming pl and pd, based on the DFT-GIAO method. Observed characters are well explained by the total sigma(Se). Paramagnetic terms (sigmap(Se)) are governed by (sigmap(Se)xx+sigmap(Se)yy), in which the direction of np(Se) (constructed by 4pz(Se)) is set to the z axis. The main interaction in pl is the np(Se)-pi(C6H4)-pz(Y) type. The Y dependence in pl occurs through admixtures of 4pz(Se) in pi(SeC6H4Y) and pi*(SeC6H4Y), modified by the conjugation, with 4px(Se) and 4py(Se) in sigma(CSeX) and sigma*(CSeX) (X=H or C) under a magnetic field. The main interaction in pd is the sigma(CSeX)-pi(C6H4)-px(Y) type, in which Se-X is nearly on the x axis. The Y dependence in pd mainly arises from admixtures of 4pz(Se) in np(Se) with 4px(Se) and 4py(Se) in modified sigma*(CSeX), since np(Se) is filled with electrons. It is demonstrated that the effect of Y on sigmap(Se) in the pl conformation is the same regardless of whether Y is an electron-donor or electron-acceptor, whereas for pd conformations the effect is greater when Y is an electron donor, as observed in 1 and 2, respectively. Contributions of each molecular orbital and each transition on sigmap(Se) are evaluated, which enables us to recognize and visualize the effect clearly.     

Structural characterization of phosphorus-based networks and clusters: 31P MAS NMR spectroscopy and magnetic shielding calculations on Hittorf's phosphorus

The (31)P MAS NMR spectrum of Hittorf's phosphorus has been measured and assigned to the 21 crystallographically distinct phosphorus atoms based on two-dimensional dipolar correlation spectroscopies. Application of such 2D techniques to phosphorus-based networks is particularly challenging owing to the wide chemical shift dispersions, rapid irreversible decay of transverse magnetization, and extremely slow spin-lattice relaxation in these systems. Nevertheless, a complete assignment was possible by using the combination of correlated spectroscopy (COSY) and radiofrequency-driven dipolar recoupling (RFDR). The assignment is supported further by DFT-based ab initio chemical shift calculations using a cluster-model approach, which gives good agreement between experimental and calculated chemical shift values. The (31)P chemical shifts appear to be strongly correlated with the average P-P bond lengths within the P(P(1/3))(3) coordination environments, whereas no clear dependence on average P-P-P bond angles can be detected. Calculations of localized Kohn-Sham orbitals reveal that this bond-length dependence is reflected in energy variations in the corresponding localized p-p-σ orbitals influencing the paramagnetic deshielding contribution in Ramsey's equation. In contrast, the contributions of the lone pairs to shielding differences are small and/or do not vary in a systematic manner for the different crystallographically distinct phosphorus sites. The combined spectroscopic and quantum chemical approach applied here and the increased theoretical understanding of (31)P chemical shifts will facilitate the structural elucidation of other phosphorus-based clusters and networks.     

Thermodynamic Properties of the Isomers of [HNOS], [HNO2S], and [HNOS2] and the Role of the Central Sulfur

Simple hydrides of compounds containing N, S, and O are of significant interest due to the role that they play in atmospheric chemistry and in biological pathways. There is a lack of quantitative thermodynamic data on these compounds. We have used a reliable computational chemistry approach based on valence CCSD(T) calculations extrapolated to the complete basis set limit with additional corrections to predict the heats of formation and bond dissociation energies of such compounds. The results show that compounds with the ability of the central S atom to effectively expand its valency leads to more stable isomers and, as a consequence, that those with the NSO structural motif are thermochemically more stable than those with the SNO motif. In addition, S?O bonds are preferred over N?O bonds.     

Complexation of the vulcanization accelerator tetramethylthiuram disulfide and related molecules with zinc compounds including zinc oxide clusters (Zn4O4)

Zinc chemicals are used as activators in the vulcanization of organic polymers with sulfur to produce elastic rubbers. In this work, the reactions of Zn(2+), ZnMe(2), Zn(OMe)(2), Zn(OOCMe)(2), and the heterocubane cluster Zn(4)O(4) with the vulcanization accelerator tetramethylthiuram disulfide (TMTD) and with the related radicals and anions Me(2)NCS(2)(*), Me(2)NCS(3)(*), Me(2)NCS(2)(-), and Me(2)NCS(3)(-) have been studied by quantum chemical methods at the MP2/6-31+G(2df,p)//B3LYP/6-31+G* level of theory. More than 35 zinc complexes have been structurally characterized and the energies of formation from their components calculated for the first time. The binding energy of TMTD as a bidendate ligand increases in the order ZnMe(2)相似文献