Hydrolytic Cleavage of Paraoxon by Octanohydroxamate Ion in Cationic Microemulsions

The hydrolysis reaction of O,O‐diethyl O‐p‐nitrophenylphosphate (Paraoxon) with the octanohydroxamate ion (OHA^?) was studied in a cationic oil‐in‐water (O/W) microemulsion system over a pH range 7.5–12.0 at 300 K. The O/W systems are stabilized by using cationic surfactant, cetyltrimethylammonium bromide (CTAB), and n‐butanol as cosurfactants. In a microemulsion, the rate enhancement by OHA^? is greater toward the cleavage of paraoxon than its spontaneous (2.1 × 10⁷ s^?1) hydrolysis. The k_obs values for the reaction of paraoxon with OHA^? were determined in different microemulsion compositions with varying chain length of alcohols (n‐butanol, n‐pentanol, n‐octanol, and n‐dodecanol) and alkanes (n‐hexane, n‐heptane, and n‐decane). The effects of water content, pH, and size of the oil pool have been discussed.     

Concomitant polymorphism in an organometallic ruthenium(II) complex with an N,N′‐donor ligand

The simultaneous crystallization of different polymorphs, i.e. concomitant polymorphism, is a phenomenon which, when properly recognized and studied, can provide useful information for a variety of disciplines. It is rare for ruthenium complexes, although it has been observed. In the synthesis of the ruthenium(II) complex chlorido(η⁶‐p‐cymene)(dimethyl 2,2′‐bypyridine‐4,5‐dicarboxylate‐κ²N,N′)ruthenium(II) hexafluoridophosphate, [RuCl(C₁₀H₁₄)(C₁₄H₁₂N₂O₄)]PF₆, concomitant polymorphs were crystallized under the same conditions. The colour of both crystals was orange, but the shapes, as well as the orientation of the p‐cymene and methoxycarbonyl groups, were different. The crystal structures of both isomers show approximately the same bond lengths. In the asymmetric unit, there is one cation and one anion. Due to the absence of strong hydrogen bonds, only weak intermolecular interactions were observed. The Hirshfeld surface and two‐dimensional fingerprint plots of both isomers satisfactorily explain the difference in the melting points.     

Molecular dynamics simulations of the detoxification of paraoxon catalyzed by phosphotriesterase

Combined QM(PM3)/MM molecular dynamics simulations together with QM(DFT)/MM optimizations for key configurations have been performed to elucidate the enzymatic catalysis mechanism on the detoxification of paraoxon by phosphotriesterase (PTE). In the simulations, the PM3 parameters for the phosphorous atom were reoptimized. The equilibrated configuration of the enzyme/substrate complex showed that paraoxon can strongly bind to the more solvent‐exposed metal ion Zn_β, but the free energy profile along the binding path demonstrated that the binding is thermodynamically unfavorable. This explains why the crystal structures of PTE with substrate analogues often exhibit long distances between the phosphoral oxygen and Zn_β. The subsequent S_N2 reaction plays the key role in the whole process, but controversies exist over the identity of the nucleophilic species, which could be either a hydroxide ion terminally coordinated to Zn_α or the μ‐hydroxo bridge between the α‐ and β‐metals. Our simulations supported the latter and showed that the rate‐limiting step is the distortion of the bound paraoxon to approach the bridging hydroxide. After this preparation step, the bridging hydroxide ion attacks the phosphorous center and replaces the diethyl phosphate with a low barrier. Thus, a plausible way to engineer PTE with enhanced catalytic activity is to stabilize the deformed paraoxon. Conformational analyses indicate that Trp131 is the closest residue to the phosphoryl oxygen, and mutations to Arg or Gln or even Lys, which can shorten the hydrogen bond distance with the phosphoryl oxygen, could potentially lead to a mutant with enhanced activity for the detoxification of organophosphates. © 2009 Wiley Periodicals, Inc. J Comput Chem, 2009     

13C‐Isotope Labeled Surrogate for Estimating Organophosphorus Pesticides in Agricultural Products by Gas Chromatography‐Mass Spectrometry

¹³C‐isotope labeled paraoxon‐ethyl (¹³C₂‐EP) and deuterium‐labeled paraoxon‐methyl (D₆‐MP) were synthesized and employed as the surrogate (SS) and the internal standard (IS) in organophosphorus pesticides (OPs) spiking agricultural QC samples. The residual amounts of OPs were determined with gas chromatography‐mass spectrometry (GC‐MS) method. The isotope‐labeled compounds used in this study could assist the analysts to estimate the appropriateness and the uncertainties produced by pre‐treatment process. It was found that these isotope labeled compounds could improve the accuracy (10% to 40% of quantitative analysis), and provide efficacious calibration for the spiking recoveries of OPs in some agricultural samples.     

Oligonucleotide Analogues with Integrated Bases and Backbone

The thiomethylene‐linked U*[s]U⁽*⁾ dimers 9 – 14 were synthesized by substitution of the 6‐[(mesyloxy)methyl]uridine 6 by the thiolate derived from the uridine‐5′‐thioacetates 7 and 8 followed by O‐deprotection. Similarly, the thiomethylene‐linked A*[s]A⁽*⁾ dimers 9 – 14 were obtained from the 8‐(bromomethyl)adenosine 15 and the adenosine‐5′‐thioacetates 16 and 17 . The concentration dependence of both H? N(3) of the U*[s]U⁽*⁾ dimers 9 – 14 evidences the formation of linear and cyclic duplexes, and of linear higher associates, C(8 or 6)CH₂OH and/or C(5′/II)OH groups favouring the formation of cyclic duplexes. The concentration dependence of the chemical shift for both H₂N? C(6) of the A*[s]A⁽*⁾ dimers 18 – 23 evidences the formation of mainly linear associates. The heteroassociation of U*[s]U⁽*⁾ to A*[s]A⁽*⁾ dimers is stronger than the homoassociation of U*[s]U⁽*⁾ dimers, as evidenced by diluting equimolar mixtures of 11 / 20 and 13 / 22 . A 1 : 1 stoichiometry of the heteroassociation is evidenced by a Job's plot for 11 / 20 , and by mole ratio plots for 9 / 18, 10 / 19, 12 / 21, 13 / 22 , and 14 / 23 .     

Development and evaluation of microfluidic device for the determination of organophosphorus pesticide incorporating monolith based immobilized AChE with spectrophotometric detection

A spectrophotometric microfluidic bioreactor system is described for the determination of organophosphorus pesticides. The glass chip was designed and fabricated for in situ monolithic preparation and subsequently acetlycholineserase (AChE) immobilization via a covalent bonding method. The porous polymer monolith was prepared using glycidyl methacrylate, ethylenedimethacrylate and 2,2-dimethoxy-1,2-diphenylethan-1-one in binary porogenic solvents of cyclohexanol and dodecanol. The epoxide groups of monolith were reacted with ethylenediamine and gluteraldehyde to allow immobilization of the enzyme using their amine groups. Organophosphorus pesticides can be determined by measuring their inhibition effect on the enzyme AChE using Ellman's reaction. A linear relationship between the absorbance and percentage inhibitions was obtained over the concentration range of 0.25 to 2.50?mg?L^?1 paraoxon with a correlation coefficient (r ²) of 0.9974. The limit of detection (LOD) defined as 10% inhibition (I ₁₀) was 0.17?mg?L^?1 for paraoxon. The relative standard deviations (RSD) of 1.0?mg?L^?1 paraoxon was 3.73% (n?=?5). The proposed µFI system incorporates efficient enzyme immobilization and reduces reagent consumption and waste production and could thus be considered to be more environmentally friendly.     

Micellar‐accelerated hydrolysis of organophosphate and thiophosphates by pyridine oximate

Rate constants for the hydrolysis reaction of phosphate (paraoxon) and thiophosphate (parathion, fenitrothion) esters by oximate (pyridinealdoxime 2‐PyOx⁻ and 4‐PyOx⁻) and its functionalized pyridinium surfactants 4‐(hydroxyimino) methyl)‐1‐alkylpyridinium bromide ions (alkyl = C_nH_2n+1, n = 10, 12, 14, 16) have been measured kinetically at pH 9.5 and 27°C in micellar media of cationic surfactants cetyltrimethylammonium bromide (CTAB) and cetylpyridinium bromide (CPB). Acid dissociation constant, pK_a, of oximes has also been determined by spectrophotometric, kinetic, and potentiometric methods. The rate acceleration effects of cationic micelles have been explored. Cationic micelles of the pyridinium head group (CPB) showed a large catalytic effect than the ammonium head group (CTAB). The effects of pH, oximate concentration, and surfactants have been discussed.     

Multifunctional Tricarbazolo Triazolophane Macrocycles: One‐Pot Preparation,Anion Binding,and Hierarchical Self‐Organization of Multilayers

Programming the synthesis and self‐assembly of molecules is a compelling strategy for the bottom‐up fabrication of ordered materials. To this end, shape‐persistent macrocycles were designed with alternating carbazoles and triazoles to program a one‐pot synthesis and to bind large anions. The macrocycles bind anions that were once considered too weak to be coordinated, such as PF₆^?, with surprisingly high affinities (β₂=10¹¹ M ^?2 in 80:20 chloroform/methanol) and positive cooperativity, α=(4 K₂/K₁)=1200. We also discovered that the macrocycles assemble into ultrathin films of hierarchically ordered tubes on graphite surfaces. The remarkable surface‐templated self‐assembly properties, as was observed by using scanning tunneling microscopy, are attributed to the complementary pairing of alternating triazoles and carbazoles inscribed into both the co‐facial and edge‐sharing seams that exist between shape‐persistent macrocycles. The multilayer assembly is also consistent with the high degree of molecular self‐association observed in solution, with self‐association constants of K=300 000 M ^?1 (chloroform/methanol 80:20). Scanning tunneling microscopy data also showed that surface assemblies readily sequester iodide anions from solution, modulating their assembly. This multifunctional macrocycle provides a foundation for materials composed of hierarchically organized and nanotubular self‐assemblies.     

Experimental verification of diverging mechanisms in the binding of ether,thioether, and sulfone ligands to a dirhodium tetracarboxylate

Complexation of the oxygen atom in 2‐butylphenylethers and sulfur in 2‐butylphenylthioethers to a rhodium atom in dirhodium tetracarboxylate Rh^(II)₂[(R)‐(+)‐MTPA]₄ is compared. Oxygen atoms complex via electrostatic attraction exclusively leading to an increase in α effects on C‐2 complexation shifts in the sequence OCH₃ > F > Br > NO₂. However, that trend is opposite in thioethers. This can be rationalized by an additional highest occupied molecular orbital (HOMO)–LUMO interaction and the response of this interaction upon complex formation shifts. Thereby, an experimental evidence was found for the existence of the HOMO–LUMO binding mechanism which has been proposed previously based on theoretical considerations and indirect spectroscopic evidence. Sulfones hardly bind to Rh^(II)₂[(R)‐(+)‐MTPA]₄. Diastereomeric dispersion effects at ¹³C and ¹H signals can be observed for all compounds indicating that enantiodifferentiation is easy in all classes of functionalities. Copyright © 2010 John Wiley & Sons, Ltd.     

Carbohydrate–Lipid Interactions: Affinities of Methylmannose Polysaccharides for Lipids in Aqueous Solution

The interactions between 3‐O‐methyl‐mannose polysaccharides (MMPs), extracted from Mycobacterium smegmatis (consisting of a mixture of MMP‐10, ‐11, ‐12 and ‐13) or obtained by chemical synthesis (MMP‐5_s, ‐8_s, ‐11_s and ‐14_s), and linear saturated and unsaturated fatty acids (FAs), and a commercial mixture of naphthenic acids (NAs) in aqueous solution at 25 °C and pH 8.5 were quantified by electrospray ionization mass spectrometry (ESI‐MS). Association constants (K_a) for MMP binding to four FAs (myristic acid, palmitic acid, stearic acid and trans‐parinaric acid) were measured by using an indirect ESI‐MS assay, the “proxy protein” method. The K_a values are in the 10⁴–10⁵ M ^?1 range and, based on results obtained for the binding of the synthetic MMPs with palmitic acid, increase with the size of the carbohydrate. Notably, the measured affinity of the extracted MMPs for trans‐parinaric acid is two orders of magnitude smaller than the reported value, which was determined by using a fluorescence assay. Using a newly developed competitive binding assay, referred to as the “proxy protein/proxy ligand” ESI‐MS method, it was shown that MMPs bind specifically to NAs in aqueous solution, with apparent affinities of approximately (5×10⁴) M ^?1 for the mixture of NAs tested. This represents the first demonstration that MMPs can bind to hydrophobic species more complex than those containing linear alkyl/alkenyl chains. Moreover, the approach developed here represents a novel method for probing carbohydrate–lipid interactions.     

Ropinirole hydro­chloride,a dopamine agonist

Ropinirole hydro­chloride, or diethyl[2‐(2‐oxo‐2,3‐dihydro‐1H‐indol‐4‐yl)ethyl]ammonium chloride, C₁₆H₂₅N₂O⁺·Cl⁻, belongs to a class of new non‐ergoline dopamine agonists which bind specifically to D2‐like receptors with a selectivity similar to that of dopamine (D3 > D2 > D4). The N atom in the ethyl­amine side chain is protonated and there is a hydrogen bond between it and the Cl⁻ ion. In the crystal structure, two cations and two anions form inversion‐related cyclic dimers via N—H⋯Cl hydrogen bonds.     

Formation of Octameric Methylaluminoxanes by Hydrolysis of Trimethylaluminum and the Mechanisms of Catalyst Activation in Single‐Site α‐Olefin Polymerization Catalysis

Hydrolysis of trimethylaluminum (TMA) leads to the formation of methylaluminoxanes (MAO) of general formula (MeAlO)_n(AlMe₃)_m. The thermodynamically favored pathway of MAO formation is followed up to n=8, showing the major impact of associated TMA on the structural characteristics of the MAOs. The MAOs bind up to five TMA molecules, thereby inducing transition from cages into rings and sheets. Zirconocene catalyst activation studies using model MAO co‐catalysts show the decisive role of the associated TMA in forming the catalytically active sites. Catalyst activation can take place either by Lewis‐acidic abstraction of an alkyl or halide ligand from the precatalyst or by reaction of the precatalyst with an MAO‐derived AlMe₂⁺ cation. Thermodynamics suggest that activation through AlMe₂⁺ transfer is the dominant mechanism because sites that are able to release AlMe₂⁺ are more abundant than Lewis‐acidic sites. The model catalyst system is demonstrated to polymerize ethene.     

Influence of pyridine oximate and quaternized pyridinium oximate ions on the hydrolysis of phosphate esters in cationic microemulsions

Kinetic studies have been performed to understand the hydrolytic potencies of oximate (2- and 4-pyridinealdoxime) and its functionalized oximate (4-(hydroxyiminomethyl)-1-alkylpyridinium bromide) ions (alkyl?=?C₁₀H₂₁ (4-C₁₀PyOx^-); alkyl?=?C₁₂H₂₅ (4-C₁₂PyOx^-)) in the cleavage of phosphate esters, diethyl p-nitrophenylphosphate (Paraoxon) and p-nitrophenyl diphenyl phosphate (PNPDPP) in a cationic (O/W) microemulsion system (ME) over a pH range 7.5 to 11.0 at 300?K. The k_obs values for the reaction of paraoxon with oximate and its functionalized oximate were determined in different microemulsion composition and the kinetic rate data shows that k_obs values increases with increasing water content. The specificity of different chain length of alcohols (n-butanol, n-pentanol, n-hexanol and n-octanol) was also investigated in hydrolytic reactions of paraoxon for different microemulsion composition.     

Spectral Studies on the Interaction between Mercuric Ion and ApoCopC

The interaction between mercuric ion and apoCopC in the absence or presence of cupric ion was investigated through difference UV spectra in Hepes buffer （10 mmol·L^-1） at pH 7.4. The results suggest that mercuric ion can bind to C- and N-terminal binding sites of apoCopC, and the conditional binding constants were calculated to be kN=（6.79± 1.12）× 10^6 mol^-1·L and kc=（3.06±0.05）× 10^5 mol^-1·L. Using urea as a chemical agent, the conformational stabilities of apoCopC and HgN^2＋ -CopC-Hgc^2＋ were monitored by fluorescence spectrum in Hepes buffer （50 mmol·L^-1） at pH 7.4. The free energy of stabilization is （14.69±0.85） and （16.66±0.55） kJ.mol^-1, respectively. HgN^2＋ -CopC-Hgc^2＋ is more stable than apoCopC.     

Hirshfeld surface analysis of two new phosphorothioic triamide structures

Hirshfeld surfaces and two‐dimensional fingerprint plots are used to analyse the intermolecular interactions in two new phosphorothioic triamide structures, namely N,N′,N′′‐tris(3,4‐dimethylphenyl)phosphorothioic triamide acetonitrile hemisolvate, P(S)[NHC₆H₃‐3,4‐(CH₃)₂]₃·0.5CH₃CN or C₂₄H₃₀N₃PS·0.5CH₃CN, (I), and N,N′,N′′‐tris(4‐methylphenyl)phosphorothioic triamide–3‐methylpiperidinium chloride (1/1), P(S)[NHC₆H₄(4‐CH₃)]₃·[3‐CH₃‐C₅H₉NH₂]⁺·Cl⁻ or C₂₁H₂₄N₃PS·C₆H₁₄N⁺·Cl⁻, (II). The asymmetric unit of (I) consists of two independent phosphorothioic triamide molecules and one acetonitrile solvent molecule, whereas for (II), the asymmetric unit is composed of three components (molecule, cation and anion). In the structure of (I), the different components are organized into a six‐molecule aggregate through N—H...S and N—H...N hydrogen bonds. The components of (II) are aggregated into a two‐dimensional array through N—H...S and N—H...Cl hydrogen bonds. Moreover, interesting features of packing arise in this structure due to the presence of a double hydrogen‐bond acceptor (the S atom of the phosphorothioic triamide molecule) and of a double hydrogen‐bond donor (the N—H unit of the cation). For both (I) and (II), the full fingerprint plot of each component is asymmetric as a consequence of the presence of three fragments. These analyses reveal that H...H interactions [67.7 and 64.3% for the two symmetry‐independent phosphorothioic triamide molecules of (I), 30.7% for the acetonitrile solvent of (I), 63.8% in the phosphorothioic triamide molecule of (II) and 62.9% in the 3‐methylpiperidinium cation of (II)] outnumber the other contacts for all the components in both structures, except for the chloride anion of (II), which only receives the Cl...H contact. The phosphorothioic triamide molecules of both structures include unsaturated C atoms, thus presenting C...H/H...C interactions: 17.6 and 21% for the two symmetry‐independent phosphorothioic triamide molecules in (I), and 22.7% for the phosphorothioic triamide molecule of (II). Furthermore, the N—H...S hydrogen bonds in both (I) and (II), and the N—H...Cl hydrogen bonds in (II), are the most prominent interactions, appearing as large red spots on the Hirshfeld surface maps. The N...H/H...N contacts in structure (I) are considerable, whereas for (II), they give a negligible contribution to the total interactions in the system.     

New anthracene based Schiff base ligands appended Cu(II) complexes: Theoretical study,DNA binding and cleavage activities

New anthracene based Schiff base ligands L ¹ and H( L ² ), their Cu(II) complexes [Cu( L ¹ )Cl₂] ( 1 ) and [Cu( L ² )Cl] ( 2 ) , (where L ¹  = N¹,N²‐bis(anthracene‐9‐methylene)benzene‐1,2‐diamine, L ²  = (2Z,4E)‐4‐(2‐(anthracen‐9‐ylmethyleneamino)phenylimino)pent‐2‐en‐2‐ol) have been prepared and characterized by elemental analysis, NMR, FAB‐mass, EPR, FT‐IR, UV–Vis and cyclic voltammetry. The electronic structures and geometrical parameters of complexes 1 and 2 were analyzed by the theoretical B3LYP/DFT method. The interaction of these complexes 1 and 2 with CT‐DNA has been explored by using absorption, cyclic voltammetric and CD spectral studies. From the electronic absorption spectral studies, it was found that the DNA binding constants of complexes 1 and 2 are 8.7 × 10³ and 7.0 × 10⁴ M^?1, respectively. From electrochemical studies, the ratio of DNA binding constants K₊/K₂₊ for 2 has been estimated to be >1. The high binding constant values, K₊/K₂₊ ratios more than unity and positive shift of voltammetric E_1/2 value on titration with DNA for complex 2 suggest that they bind more avidly with DNA than complex 1 . The inability to affect the conformational changes of DNA in the CD spectrum is the definite evidences of electrostatic binding by the complex 1 . It can be assumed that it is the bulky anthracene unit which sterically inhibits these complexes 1 and 2 from intercalation and thereby remains in the groove or electrostatic. The complex 2 hardly cleaves supercoiled pUC18 plasmid DNA in the presence of hydrogen peroxide. The results suggest that complex 2 bind to DNA through minor groove binding.     

聚二烯丙基二甲基氯化铵在质子交换膜表面静电自组装过程的热力学研究

本文通过热化学方法设计了PDDA滴定质子交换膜,并研究了高分子的静电自组装过程。通过非线性拟合数据分析,求出了自组装过程的焓变（ ）和结合常数（K）。根据该反应过程中的热力学参数,可知自组装过程是“焓驱动”反应。热量的放出代表着能量的降低,有利于反应的发生;而自由度的减小不利于反应的发生。对于每个离子键的形成,单分子DDA的焓变超过了PDDA,这是因为小分子能够更加自由地结合到膜上,而高分子PDDA有一定的位阻效应。     

A Macrocycle Based on a Heptagon‐Containing Hexa‐peri‐hexabenzocoronene

A cyclophane is reported incorporating two units of a heptagon‐containing extended polycyclic aromatic hydrocarbon (PAH) analogue of the hexa‐peri‐hexabenzocoronene (HBC) moiety (hept‐HBC). This cyclophane represents a new class of macrocyclic structures that incorporate for the first time seven‐membered rings within extended PAH frameworks. The saddle curvature of the hept‐HBC macrocycle units induced by the presence of the nonhexagonal ring along with the flexible alkyl linkers generate a cavity with shape complementarity and appropriate size to enable π interactions with fullerenes. Therefore, the cyclophane forms host–guest complexes with C₆₀ and C₇₀ with estimated binding constants of K_a=420±2 m ^?1 and K_a=(6.49±0.23)×10³ m ^?1, respectively. As a result, the macrocycle can selectively bind C₇₀ in the presence of an excess of a mixture of C₆₀ and C₇₀.     

The coordination polymer poly[bis[μ2‐2‐(2,2′‐bi‐1H‐imidazol‐1‐yl)acetato]cadmium]

The title compound, [Cd(C₈H₇N₄O₂)₂]_n, crystallizes in the centrosymmetric triclinic space group P with an asymmetric unit consisting of a bivalent Cd^II atom and two 2‐(2,2′‐bi‐1H‐imidazol‐1‐yl)acetate (BDAC⁻) anions. Two inversion‐related BDAC⁻ ligands are oppositely arranged and bind two Cd^II ions to form a [Cd₂(BDAC)₂] rhomboid subunit which is bridged by another BDAC⁻ ligand to form an infinite ladder along the a direction containing parallelogram grids. The three‐dimensional supramolecular architecture is formed by hydrogen bonds and C—H...π and π–π interactions.     

Nanofibrillar Cellulose‐Chitosan Composite Film Electrodes: Competitive Binding of Triclosan,Fe(CN)63−/4−, and SDS Surfactant

Glassy carbon electrodes are modified with a thin film of a cellulose‐chitosan nanocomposite. Cellulose nanofibrils (of ca. 4 nm diameter and 250 nm length) are employed as an inert backbone and chitosan (poly‐D ‐glucosamine, low molecular weight, 75–85% deacetylated) is introduced as a structural binder and “receptor” or molecular binding site. The composite films are formed in a solvent evaporation method and prepared in approximately 0.8 μm thickness. The adsorption of three molecular systems into the cellulose‐chitosan films is investigated and approximate Langmuirian binding constants are evaluated: i) Fe(CN)₆^4? (K_Ferrocyanide=2.2×10³ mol^?1 dm³ in 0.1 M phosphate buffer at pH 6) is observed to bind to ammonium chitosan functionalities (present at pH<7), ii) triclosan (K_Triclosan=2.6×10³ mol^?1 dm³ in 0.1 M phosphate buffer pH 9.5) is shown to bind only weakly and under alkaline conditions, and iii) the anionic surfactant dodecylsulfate (K_SDS=3.3×10⁴ mol^?1 dm³ in 0.1 M phosphate buffer pH 6) is shown to bind relatively more strongly in acidic media. The competitive binding of Fe(CN)₆^4? and dodecylsulfate anions is proposed as a way to accumulate and indirectly determine the anionic surfactant.