Polymer modeling: where has it been and where is it going?

The development of the area of polymer modeling often referred to as molecular modeling has been reviewed from its early beginnings to the present day. Key forces influencing the development include computational power, algorithmic advances and access to computational resources. The desire to apply modeling techniques to predict the properties of increasingly complex polymer-containing systems, taken in conjunction with a number of current limitations discussed in this brief review, is expected to define in part some essential future developments.     

Metrological traceability: I make it 42; you make it 42; but is it the same 42?

The paper reproduces a talk given at a 2-day symposium on quality assurance in chemistry held in Brisbane, Australia in 2005. Intended for an audience of analysts in the field, the theme of the symposium drew inspiration from the series of books by Douglas Adams “The Hitchhiker's Guide to the Galaxy”. An introduction to basic concepts of metrological traceability is followed by a discussion of practical steps to ensure metrological traceability of field measurement results. The relationship between metrological traceability and comparability of measurement results is discussed. To achieve metrological traceability in the field, the use of appropriate certified reference materials for calibration is recommended. Examples of atmospheric carbon dioxide and roadside breathalyzer measurements are given.

NHC-catalysed benzoin condensation – is it all down to the Breslow intermediate?

The Breslow catalytic cycle describing the benzoin condensation promoted by N-heterocyclic carbenes (NHC) as proposed in the late 1950s has since then been tried by generations of physical organic chemists. Emphasis has been laid on proofing the existence of an enaminol like structure (Breslow intermediate) that explains the observed umpolung of an otherwise electrophilic aldehyde. The present study is not focusing on spectroscopic elucidation of a thiazolydene based Breslow intermediate but rather tries to clarify if this key-intermediate is indeed directly linked with the product side of the overall reaction. The here presented EPR-spectroscopic and computational data provide a fundamentally different view on how the benzoin condensation may proceed: a radical pair could be identified as a second key-intermediate that is derived from the Breslow-intermediate via an SET process. These results highlight the close relationship to the Cannizarro reaction and oxidative transformations of aldehydes under NHC catalysis.     

When is a metallopolymer not a metallopolymer? When it is a metallomacrocycle

We report reactions of cobalt(II) acetate with a series of ditopic bis(tpy) ligands (tpy = 2,2':6',2'-terpyridine) containing flexible polyethyleneoxy spacers (tpy-4'-O{(CH(2))(2)O}(n)-4'-tpy, n = 2, 3, 4 or 6 ligands 1-4, respectively) which result in the formation of complicated mixtures of species, presumed to be both open chain and cyclic species. Well resolved paramagnetically shifted (1)H NMR spectra are a powerful tool for the analysis of these solution systems. Upon equilibration, [n + n] metallomacrocycles are isolated as the dominant (thermodynamic) species in some cases, and the single crystal X-ray structures of [Co(2)(3)(2)][PF(6)](4)·6MeCN and [Co(2)(4)(2)][PF(6)](5)·2MeCN (a mixed cobalt(ii)/cobalt(iii) species) are presented. Oxidation of the equilibrated cobalt(II) mixtures to kinetically inert cobalt(III) species provides additional evidence for the formation of metallomacrocycles as the thermodynamic products. Single crystal structural data for [Co(3)(2)(3)][PF(6)](9)·2MeCN·3.5H(2)O, [Co(2)(3)(2)][PF(6)](6)·10MeCN and [Co(2)(4)(2)][PF(6)](6)·6MeCN confirm the assembly of [2 + 2] and [3 + 3] metallomacrocycles. PGSE NMR spectroscopy has been used to determine the hydrodynamic radii of the solution species.     

The ester group: how hydrofluoroalkane-philic is it?

Pressurized metered-dose inhalers (pMDIs) have been recognized as potential devices for the delivery of systemically acting drugs, including biomolecules, to and through the lungs. Therefore, the development of novel excipients capable of imparting stability to suspension formulations in hydrofluoroalkane (HFA) propellants is of great relevance because many of the drugs of interest are poorly soluble in HFAs. In this work, we use ab initio calculations and chemical force microscopy (CFM) to determine the HFA-philicity of the biodegradable and biocompatible ester moiety quantitatively. The complementary information obtained from the binding energy calculations and adhesion force measurements are used to gain microscopic insight into the relationship between the chemistry of the moiety of interest and its solvation in HFA. A lactide (LA)-based copolymer surfactant was synthesized and characterized, and its ability to stabilize a dispersion of micronized budesonide in HFA227 was demonstrated. These results corroborate the ab initio calculations and CFM and show that the LA-based moiety is a suitable candidate for enhancing the stability of dispersions in HFA-based pMDIs.     

Fluorine in the Earth and the solar system,where does it come from and can it be found?

This review (1) presents a summary of the distribution of fluorine in different fluid (surficial, subterranean, metamorphic, and magmatic–hydrothermal–geothermal) and solid (oceanic and continental crust, mantle, and core) domains of the Earth, and various extraterrestrial materials and bodies (meteorites, planets and moons, and the Sun); (2) it provides an estimate of the total fluorine abundance for the Earth and in its dominant reservoirs contributing to the Earth's fluorine endowment; and (3) it discusses key observations that could further improve our understanding of fluorine abundances and geochemical systematics.     

What is a ‘gel’?

Some of the existing definitions of the term ‘gel’ are discussed and shortcomings are identified. A purely phenomenological definition is proposed: a gel is a soft, solid or solid-like material consisting of two or more components one of which is a liquid, present in substantial quantity. ‘Solid-like gels’ are further defined in terms of the dynamic mechanical properties.     

100 years of chromatography—or is it 171?

It is pointed out that the term 'chromatography' existed already before Tswett introduced it for the separation technique he described.     

The Tolman length: is it positive or negative?

By means of a large-scale molecular dynamics simulation, we show that the Tolman length, although positive, is much smaller in magnitude than previously reported. We found that the range of interparticle interaction can significantly affect the magnitude of the Tolman length. When the range of interaction is longer than five molecular diameters, the Tolman length is on the order of a few hundredths of the molecular diameter, rather than a few tenths known previously.     

Entropy evaluation using the kinetic method: is it feasible?

The kinetic method is one of the most widely used experimental techniques for the measurement of thermochemical parameters by mass spectrometry. Recently it has been realized that it can also be used to determine reaction entropies, but the validity of this approach has not been established. This Perspective evaluates kinetic method plots in cases where there is a significant entropy difference between the competing fragmentation channels (i.e. between sample and reference compounds in the dissociating cluster ion). The concept underlying this study is to calculate mass spectra theoretically, based on known thermochemical parameters and as a function of experimental conditions. This can be done accurately using the RRKM-based MassKinetics software. The resulting mass spectra are then interpreted by the kinetic method, yielding DeltaH and DeltaS values. These values are, in turn, compared with the true values used to generate the calculated mass spectra. The results show that the reaction entropy difference between sample and reference has a very large influence on kinetic method plots. This should always be considered when studying energy-dependent mass spectra (using metastable ions or low- or high-energy collision-induced dissociation (CID)), even if only DeltaH is to be determined. Kinetic method plots are not strictly linear and this becomes a serious issue in the case of small molecules showing a large entropy effect. In such cases, results obtained at a low degree of excitation are more accurate. Energy and entropy effects can be evaluated in a relatively straightforward manner: first, the apparent Gibbs energy (DeltaG(app)) and effective temperature (T(eff)) are determined from kinetic method plots (intercept and slope, respectively), obtained from experiments using various degrees of excitation. Second, the resulting DeltaG(app) is plotted against T(eff), the slope yielding DeltaS while the intercept (extrapolation to zero temperature) yields DeltaH. This data evaluation yields more accurate results than alternative methods used in the literature. The resulting DeltaH values are fairly accurate, with errors, in most cases, <4 kJ mol(-1). On the other hand, DeltaS is systematically underestimated by 20-40%. Empirically scaling DeltaS values determined by the kinetic method by 1.35 results in a DeltaS value within 20% (or 10 J mol(-1) K(-1)) of the theoretical value.     

Computational and spectroscopic studies of organic mixed-valence compounds: where is the charge?

This article discusses recent progress by a combination of spectroscopy and quantum-chemical calculations in classifying and characterizing organic mixed-valence systems in terms of their localized vs. delocalized character. A recently developed quantum-chemical protocol based on non-standard hybrid functionals and continuum solvent models is evaluated for an extended set of mixed-valence bis-triarylamine radical cations, augmented by unsymmetrical neutral triarylamine-perchlorotriphenylmethyl radicals. It turns out that the protocol is able to provide a successful assignment to class II or class III Robin-Day behavior and gives quite accurate ground- and excited-state properties for the radical cations. The limits of the protocol are probed by the anthracene-bridged system 8, where it is suspected that specific solute-solvent interactions are important and not covered by the continuum solvent model. Intervalence charge-transfer excitation energies for the neutral unsymmetrical radicals are systematically overestimated, but dipole moments and a number of other properties are obtained accurately by the protocol.     

New bioorganic reagents: evolved cyclohexanone monooxygenase--why is it more selective?

Four mutants of the cyclohexanone monooxygenase (CHMO) evolved as catalysts for Baeyer-Villiger oxidation of 4-hydroxycyclohexanone were investigated as catalysts for a variety of 4-substituted and 4,4-disubstituted cyclohexanones. Several excellent catalytic matches (mutant/substrate) were identified. The most important, however, is the finding that, in a number of cases, a mutant with a single exchange, Phe432Ser, was shown to be as robust and more selective as a catalyst than the wild-type CHMO. All biotransformations were performed on a laboratory scale, allowing full characterization of the products. The absolute configurations of two products were established. A model suggesting a possible role of the 432 serine residue in enantioselectivity control is proposed.     

The indirect through-space F-F coupling in peri-difluoronaphthalene: is it anisotropic?

The (1)H, (19)F and (13)C spectra have been obtained of a sample of peri-difluoronaphthalene dissolved in the nematic liquid crystalline solvent ZLI 1695. The (13)C satellite spectra from the six, single-(13)C isotopomers at natural abundance in both the (1)H and (19)F spectra were identified and analysed to yield a set of residual total, anisotropic spin-spin couplings, T(ij). This was achieved by first obtaining residual (13)C-(19)F and (13)C-(1)H couplings from a proton-encoded, (13)C detected, local field 2D spectrum. The 45 values of T(HH), T(HF) and T(CH) were used to obtain the structure of the molecule, and then to estimate whether there is a significant contribution from the component along the magnetic field, J, of the anisotropic, electron-mediated, spin-spin coupling tensors for (13)C-(19)F and (19)F-(19)F pairs. It is found that there is strong evidence for a significant contribution of J to T(FF) but not for the (13)C-(19)F pairs.     

How stable actually is the planar ‘triangular’ benzene dication?

Quantum chemical calculations indicate that the kinetic stability of an earlier proposed elegant planar ‘triangular’ benzene dication 1a is very low. The kinetic stability of its methylated derivative 2a is even lower.     

Crystal structure of the [NiL](ClO<Subscript>4</Subscript>)<Subscript>2</Subscript>·H<Subscript>2</Subscript>O complex,where L is a chiral dioxatetraazamacrocyclic ligand based on the natural monoterpene (+)-3-carene

The crystal structure of the nickel(II) perchlorate complex with a chiral dioxatetraazamacrocyclic ligand (L) based on the natural monoterpene (+)-3-carene was determined by XRD (X8 APEX diffractometer, MoK _α, 2θ _max = 50°, 4278 F _hkl , R = 0.0290). Monoclinic crystals with a = 11.3550(2) Å, b = 9.4850(2) Å, c = 14.0209(3) Å; β = 104.645(1)°, V = 1461.02(5) ų, Z = 2, space group P2₁. According to XRD data, the complex has a composition [NiL](ClO₄)₂·H₂O. Its ionic structure is composed of [NiL]²⁺ complex cations, ClO ₄ ^? outer-spheric anions, and crystal water molecules. In the complex cation, the NiN₄ coordination unit is a tetrahedrally distorted square formed by coordination of the tetradentate cycle-forming ligand L.     

Synthesis,structure and magnetic properties of the pentanuclear complex [Fe<Subscript>2</Subscript>(CN)<Subscript>12</Subscript>Ni<Subscript>3</Subscript>(L)<Subscript>6</Subscript>]·27H<Subscript>2</Subscript>O,where L is nitronyl nitroxide

We succeeded in synthesizing a new high-spin complex [Fe₂(CN)₁₂Ni₃(L)₆]·27H₂O, where L is stable nitroxide 2-(imidazol-4-yl)-4,4,5,5-tetramethyl-2-imidazoline-3-oxide-1-oxyl. According to X-ray diffraction data, the metal core of the pentanuclear [Fe₂(CN)₁₂Ni₃(L)₆] molecule is a trigonal bipyramid with Fe atoms occupying the axial positions and linked via CN bridges to {NiL₂} fragments laying in the equatorial plane. A peculiarity of this coordination compound is a large number of water molecules per the [Fe₂(CN)₁₂Ni₃(L)₆] pentanuclear molecule in the structure. The complex character of the μ_eff(T) dependence points to many competing channels of exchange interactions between the three types of paramagnetic centers.     

Structural and electronic properties of S-doped fullerene C58: where is the S atom situated?

Structural and electronic properties of S-doped fullerene C58 were calculated systematically via Hartree-Fock self-consistent field (SCF) and density functional B3LYP levels of theory with 6-31G(d) basis set. The most stable C58S represents an open cage structure with a nine-member ring orifice, which provides a large hole for large atoms or small molecules to pass through into the cage. The most stable endohedral S@C58 has the S atom seated near the center of the C58 cage. The calculated highest occupied molecular orbital-lowest unoccupied molecular orbital energy gaps of the isomers lie in the range of 1.42-2.50 eV. The electron affinity and the ionization potential were also presented as an indicator of the kinetic stability. Our results may aid in the design of experimental methods for controlling the nature of fullerene cages (for example, doping, opening, and reclosing them).     

The Power of Accurate Energetics (or Thermochemistry: What is it Good for?)

The utility of measuring the energetics of ion-molecule reactions is discussed. After distinguishing between the terms of thermodynamics (macroscopic, equilibrium quantities) and energetics (microscopic and kinetically relevant quantities), the potential energy surfaces for ion-molecule reactions are reviewed and their implications discussed. Equations describing the kinetic energy dependence of ion-molecule reactions are introduced and the effects of entropy on reaction rates and branching ratios are discussed. Several case histories allow an exploration of the utility of accurate thermochemical information and probe how accurate such energetic information must be to be predictive. These case studies include decomposition of hydrated metal dications, the reaction of FeO⁺ with H₂, and fragmentation of a small protonated peptide (GG). These illustrate a range of interesting systems for which accurate energetic information has been influential in understanding the observed reactivity. Comparisons with theory demonstrate that experimental information is still required for truly predictive capability.