Increasing the accuracy of mass isotopomer analysis through calibration curves constructed using biologically synthesized compounds

Mass isotopomer analysis is an important technique to measure the production and flow of metabolites in living cells, tissues, and organisms. This technique depends on accurate quantifications of different mass isotopomers using mass spectrometry. Constructing calibration curves using standard samples is the most universal approach to convert raw mass spectrometry measurements into quantitative distributions of mass isotopomers. Calibration curve approach has been, however, of very limited use in comprehensive analyses of biological systems, mainly suffering from the lack of extensive range of standard samples with accurately known isotopic enrichment. Here, we present a biological method capable of synthesizing specifically labeled amino acids. These amino acids have well‐determined and estimable mass isotopomer distributions and thus can serve as standard samples. In this method, the bacterium strain Methylobacterium salsuginis sp. nov. was cultivated with partially ¹³C‐labeled methanol as the only carbon source to produce ¹³C‐enriched compounds. We show that the mass isotopomer distributions of the various biosynthesized amino acids are well determined and can be reasonably estimated based on proposed binomial approximation if the labeling state of the biomass reached an isotopic steady state. The interference of intramolecular inhomogeneity of ¹³C isotope abundances caused by biological isotope fractionation was eliminated by estimating average ¹³C isotope abundance. Further, the predictions are tested experimentally by mass spectrometry (MS) spectra of the labeled glycine, alanine, and aspartic acid. Most of the error in mass spectrometry measurements was less than 0.74 mol% in the test case, significantly reduced as compared with uncalibrated results, and this error is expected to be less than 0.4 mol% in real experiment as revealed by theoretical analysis. Copyright © 2009 John Wiley & Sons, Ltd.     

A simplified calculation procedure for mass isotopomer distribution analysis (MIDA) based on multiple linear regression

We have developed a novel, rapid and easy calculation procedure for Mass Isotopomer Distribution Analysis based on multiple linear regression which allows the simultaneous calculation of the precursor pool enrichment and the fraction of newly synthesized labelled proteins (fractional synthesis) using linear algebra. To test this approach, we used the peptide RGGGLK as a model tryptic peptide containing three subunits of glycine. We selected glycine labelled in two ¹³C atoms (¹³C₂‐glycine) as labelled amino acid to demonstrate that spectral overlap is not a problem in the proposed methodology. The developed methodology was tested first in vitro by changing the precursor pool enrichment from 10 to 40% of ¹³C₂‐glycine. Secondly, a simulated in vivo synthesis of proteins was designed by combining the natural abundance RGGGLK peptide and 10 or 20% ¹³C₂‐glycine at 1 : 1, 1 : 3 and 3 : 1 ratios. Precursor pool enrichments and fractional synthesis values were calculated with satisfactory precision and accuracy using a simple spreadsheet. This novel approach can provide a relatively rapid and easy means to measure protein turnover based on stable isotope tracers. Copyright © 2016 John Wiley & Sons, Ltd.     

A study of the applicability of various ionization methods and tandem mass spectrometry in the analyses of triphenyltin compounds

Triphenyltin compounds are widely introduced into the Dutch aquatic environment. To be able to detect them in environmental samples, the ionization methods of electron ionization, chemical ionization, fast atom bombardment, field desorption, thermospray and electrospray have been applied to triphenyltin acetate, chloride, fluoride and hydroxide to find out which of these methods is best suited to obtain molecular weight information on the intact molecules. For this purpose, field desorption is shown to be the most appropriate method giving, without fragmentation, molecular ion peaks, with the exception of triphenyltin hydroxide. The latter compound gives rise to the base peak at m/z 716, due to the formation of bis(triphenyltin)oxide. Field desorption tandem mass spectrometry, applied to the molecular ions, has shown that the main decomposition pathway corresponds to the loss of a phenyl radical. Subsequently, sediment and surface water samples from the Dutch inland water, without and with the use of clean-up procedures, have been analyzed by the application of field desorption in combination with tandem mass spectrometry. Within the limits of detection, no signals for the presence of triphenyltin compounds in these environmental samples has been found. Upon spiking these samples with triphenyltin acetate, chloride, fluoride and hydroxide, it has appeared that the covalently bonded non-aromatic substituent of the molecules is exchanged for hydroxyl.     

Uncertainty of determination of palladium in road dust sample by inductively coupled plasma mass spectrometry

The determination of palladium in a road dust sample taken close to the highway (w _Pd=450 ng g⁻¹) was carried out by the ICP-MS method after sample decomposition by aqua-regia. Analyses were evaluated by two methods: external calibration accompanied with mathematical correction of spectral interferences (EC) and isotope dilution measurement after separation of Pd by extraction to dibutyl sulfide solution (ID). In both cases, the uncertainties and accuracy of results were investigated. Although in the case of ideally homogeneous sample the repeatability of EC results (11 ng g⁻¹ Pd) was somewhat lower than those of ID results (16 ng g⁻¹ Pd), the uncertainties of results of both techniques were almost the same and they reached the level of 19 ng g⁻¹ Pd. The main uncertainty source of the EC method is represented by the correction of spectral interferences. In case of real non-homogeneous sample, the main uncertainty component represents the soil sampling. The uncertainty of results (approx. 75 ng g⁻¹ Pd) only slightly exceeded the repeatability (approx. 70 ng g⁻¹ Pd). The accuracy of results was proven by analyses of CRM TDB–1 Diabas Rock (in case of ID) and by the standard addition method (in case of EC).     

Fraction collection in capillary electrophoresis for various stand-alone mass spectrometers

A procedure for collecting fractions during capillary electrophoresis for their analysis using various stand-alone instruments is described. The results of a systematic study of the optimization and application of capillary electrophoresis (CE) in conjunction with a reverse-phase high-performance liquid chromatography electrospray ionization quadrupole time of flight-tandem mass spectrometry (RP-HPLC-ESI-Q-TOF-MS/MS) and inductively-coupled mass spectrometry (ICP-MS) to the analysis of the seed extract of the Japanese Pagoda Tree (Sophora japonica) are presented. The off-line coupling of CE to the matrix-assisted laser desorption/ionization-time of flight mass spectrometry (MALDI-TOF-MS) for the proteins mixture was applied. The cathode end of the capillary was placed inside a stainless steel needle using a coaxial liquid-sheath-flow configuration. The optimization of experimental parameters resulted in an efficient methodology for MS analysis of fractions. Several components contained in the extract of S. japonica were identified, some not previously known. It was demonstrated that low sensitivity, which is a real problem in off-line CE–MS analysis, could be tolerated because of a more flexible optimization of the CE separation conditions and the choice of independent stand-alone instruments for analysis of separated fractions. The estimated limit of detection for CE-RP-HPLC-ESI-Q-TOF-MS was 50 μM of polyphenols and for CE-ICP-MS, 1–100 μg/l.     

Determination of IGF-I in horse plasma by LC electrospray ionisation mass spectrometry

The insulin-like-growth factor (IGF-I) peptide is considered to be the main indirect marker for growth hormone administration (GH) in a horse. Further to a previous investigation on measurement of IGF-I in plasma samples by mass spectrometry, this study focuses on quantitative and qualitative analysis of intact IGF-I in horse plasma. First, protein-transposing software has been developed for IGF-I to facilitate its quantification by HPLC–electrospray–ion-trap mass spectrometry. Second, product-ion scan experiments on IGF-I have been conducted on standard samples, non-fortified equine plasma samples, fortified plasma samples, and equine GH post-administration samples. This “top-down” approach method enables characterisation of fragment ions corresponding to the carboxy terminal end, which can be useful for the confirmation of the presence of IGF-I in plasma samples. Figure Structure of IGF-I and amino acid sequences of IGF-I and R3 IGF-I. Deconvolution mass spectra of the IGF-I and R3 IGF-I mixture     

Basic rules for the interpretation of atmospheric pressure ionization mass spectra of small molecules

This review summarizes the basic rules for the interpretation of atmospheric pressure ionization (API) mass spectra of small molecules written with the style primarily intended for beginners and low-experienced researchers with the mass spectra interpretation. The first and basic step in any interpretation of mass spectra is always the determination of molecular weight, which is relatively easy in case of soft ionization techniques due to the limited extend of fragmentation and the prevailing presence of (de)protonated molecules in the full scan mass spectra. These [M+H]⁺ and [M−H]⁻ ions are often accompanied by low abundant molecular adducts, which can be used as the supplementary information for the unambiguous determination of molecular weights. In certain cases, adduct ions may dominate the spectra. The subsequent interpretation of full scan and tandem mass spectra is more complicated due to a high number of possible functional groups, structural subunits and their combinations resulting in numerous competitive fragmentation pathways. Typical neutral losses and the effect of individual functional groups on the fragmentation are discussed in detail and illustrated with selected examples. Modern mass analyzers have powerful features for the structural elucidation, for example high resolving power, high mass accuracy, multistage tandem mass spectrometry, dedicated softwares for the interpretation of mass spectra and prediction of their fragmentation. Background information on differences among individual ionization techniques suitable for the HPLC–MS coupling and basic types of mass analyzers with consequences for the data interpretation is briefly discussed as well. Selected examples illustrate that the right optimization of chromatographic separation and the use of other than mass spectrometric detectors can bring valuable complementary information.     

Determination of flunixin and ketoprofen in milk by liquid chromatography-tandem mass spectrometry

A relatively fast, simple and very selective liquid chromatography-tandem mass spectrometry (LC-MS-MS) method for the detection of flunixin, its 5-hydroxymetabolite and ketoprofen in raw milk has been developed and validated. After a simple extraction with acetonitrile and partial evaporation of the organic phase, the extract was filtered and directly injected into the LC-MS-MS system on a Symmetry C₁₈ column. The parent ions were selected for further fragmentation with argon. The method developed was partially validated according to Commission Decision 2002/657/EC [Commission Decision 2002/657/EC implementing Council Directive 96/23/EC concerning the performance of analytical methods and the interpretation of results]. The validation parameters were linearity, specificity, repeatability, recovery and decision limit (CCα). CCα varied from 0.5 μg kg⁻¹ for flunixin and 5-hydroxyflunixin to 1 μg kg⁻¹ for ketoprofen.Holstein-Friesian cows were given either Ketofen^® or Finadyne^® via an intravenous injection at the maximum dose as written in the instructions. Cows were milked twice a day and all samples were analysed by the method described. The highest concentrations found for ketoprofen, flunixin and 5-hydroxyflunixin were 2.5, 6.7 and 590 μg l⁻¹, respectively. The concentration of 5-hydroxyflunixin declined rapidly to concentrations below the MRL value of 40 μg l⁻¹. It can be concluded that the withdrawal time proposed by the pharmaceutical companies, 12 h after the last dosing, is acceptable for both compounds.     

Decomposition of Organometallic Complexes in the Mass Spectrometer

The reliable interpretation of mass spectra for the determination of molecular constitutions requires systematic studies on the fragmentation behavior of classes of compounds, since the large number of kinetic and energy parameters that determine the decomposition of excited polyatomic ions makes ab-initio predictions of spectra almost impossible. In this progress report, a number of general rules for the decomposition of organometallic complexes upon electron impact are discussed; a classification into decomposition types is also presented, and is illustrated by selected examples.     

Field-deployed underwater mass spectrometers for investigations of transient chemical systems

The mass spectrometer developments and underwater deployments described in this work are directed toward observations of important reactive and influential inorganic and organic chemicals. Mass spectrometer systems for measurement of dissolved gases and volatile hydrocarbons were created by coupling a membrane analyte-introduction system with linear quadrupole and ion trap mass analyzers. For molecular masses up to 100 amu, the in situ quadrupole system has detection limits on the order of 1-5 ppb. For masses up to approximately 300 amu, the underwater ion trap system detects many volatile hydrocarbons at concentrations below 1 ppb. Both instruments can function autonomously or via interactive communications from a remote control site. Continuous operations can be sustained for up to approximately 12 days. Deployments have initially involved shallow water proof-of-concept operations at depths less than 30 m. Future modifications are planned that will allow operational depths to 200 m.     

Determination of carbonyl compounds in beer by derivatisation and headspace solid-phase microextraction in combination with gas chromatography and mass spectrometry

Headspace solid-phase microextraction (SPME) followed by gas chromatography and mass spectrometry was applied for quantification of 41 chemically diverse carbonyl compounds in beer. Therefore, in-solution derivatisation with o-(2,3,4,5,6-pentafluorobenzyl)hydroxylamine (PFBHA) combined with SPME was optimised for fibre selection, PFBHA concentration, extraction temperature and time and ionic strength. Afterwards, the method was calibrated and validated successfully and extraction efficiency was compared to sampling with on-fibre derivatisation. In-solution derivatisation enabled the detection of several compounds that were poorly extracted with on-fibre derivatisation such as 5-hydroxymethylfurfural, acrolein, hydroxyacetone, acetoin, glyoxal and methylglyoxal. Others, especially (E)-2-nonenal, were extracted better with on-fibre derivatisation.     

Determination of sunitinib in human plasma using liquid chromatography coupled with mass spectrometry

An original method based on liquid chromatography with single quadrupole electrospray ionization mass spectrometry was developed for the determination of sunitinib in human plasma. The quantitation limit of the method at 0.10 ng/mL is comparable to that of tandem mass spectrometry assays. The handling of all solutions containing sunitinib was performed under low‐intensity red light to avoid the isomerization of sunitinib and enable quantitation using a single peak. Liquid–liquid extraction with a mixture of n‐hexane/isopropanol (90:10 v/v) allowed recoveries at the level of 70%. Measurements were performed using a Zorbax SB‐C₁₈ column (3.0 mm × 150 mm, 3.5 μm) and isocratic elution with (A) 0.1% aqueous formic acid and (B) acetonitrile/methanol (80:20 v/v) in an A/B ratio of 55:45 at 35°C. Under these conditions, sunitinib is eluted at 3.8 min in 6 min of the total run time. The linearity of the calibration curve ranges from 0.10 to 150 ng/mL. The baseline separation of sunitinib and its primary metabolite, N‐des‐ethyl sunitinib (SU12662), as well as sharp peak shapes, suggest a possibility of extending the applied methodology to the quantitative determination of both compounds. Isotopically labeled sunitinib was used as the internal standard. All required validation tests met the acceptance criteria and proved the method's reliability and robustness. The method may be conveniently applied to study the pharmacokinetics of sunitinib in humans.     

Determination of the Structures of Organic Molecules and Quantitative Analyses with the Field Ionization Mass Spectrometer

Field ionization and electron impact mass spectrometry complement each other well. Whereas bombardment of organic molecules with 70 eV electrons yields many characteristic fragment ions, which give valuable information about the structure of the molecules, the “soft” field ionization even of very unstable substances leads to the formation of relatively intense molecular ions which are often undetectable on ionization by electron bombardment. Field ionization also gives fragment ions that, though not very intense, are often very characteristic, and yield further information about the structure. The field desorption technique greatly reduces the degree of thermal decomposition of solid organic samples. New activation methods for field ion emitters lead to more intense ion beams and prolong the life of the emitters. Quantitative analyses using the field ionization mass spectrometer are of interest for hydrocarbon mixtures containing a very large number of components (e.g. several hundred). Simplified analyses are possible in particular for high-boiling petroleum fractions.     

Compound and metabolite distribution measured by MALDI mass spectrometric imaging in whole-body tissue sections

The determination of the compound distribution in laboratory animal tissue in early development is a standard process in pharmaceutical research. While this information is traditionally obtained by means of whole-body autoradiography using radiolabeled compounds, this technology does not distinguish between metabolites and parent compound. The technique described in this article, termed matrix-assisted laser desorption/ionization (MALDI) mass spectrometric imaging, can fill this gap by simultaneously measuring compound and multiple metabolites distributed in whole-body tissue sections, using non-labeled compounds.     

Determination of the enrichment of isotopically labelled molecules by mass spectrometry

A general method for the determination of the enrichment of isotopically labelled molecules by mass spectrometry (MS) is described. In contrast to other published procedures, the method described here takes into account and corrects for measurement errors such as the contribution at M ? 1 due to loss of hydrogen or lack of spectral resolution and provides an uncertainty value for the determined enrichment. The general procedure requires the following steps: (1) evaluation of linearity in the mass spectrometer by injecting the natural abundance compound at different concentration levels, (2) determination of the purity of the mass cluster using the natural abundance analogue, (3) calculation of the theoretical isotope composition of the labelled compound using different tentative isotope enrichments, (4) calculation of ‘convoluted’ isotope distributions for the labelled compound taking into account the purity of the mass cluster determined with the natural abundance analogue and (5) comparison of the isotope distributions measured for the labelled compound with those calculated for different isotope enrichments using linear regression. The method was applied to a series of commercially available ¹³C‐ and ²H‐labelled compounds and to a suite of singly ¹³C‐labelled β₂‐agonist prepared in‐house both by gas chromatography (GC)–MS, GC–tandem MS (MS/MS) and liquid chromatography–MS/MS with satisfactory results. It was observed that the main uncertainty source for the isotope enrichment was the uncertainty in the purity of the measured cluster as determined with the natural abundance compound. Copyright © 2014 John Wiley & Sons, Ltd.     

Determination of lithium in biological samples by inductively coupled plasma mass spectrometry

Lithium was determined in human serum by inductively coupled plasma mass spectrometry. Sample preparation was kept to the minimum: serum samples were diluted and beryllium was added as internal standard. Special attention was given to the choice of the internal standard and to the occurrence of memory effects. To test the accuracy of the method several biological reference materials were analysed, namely a “Second-Generation” Biological Reference Material (Freeze-Dried Human Serum) (University of Ghent), Human Serum SRM 909, Whole Egg Powder SRM 1845 and Mixed Human Diet SRM 1548 (National Institute of Standards and Technology). The results were compared with those obtained by other techniques. For the “second-generation” reference freeze-dried human serum a mean lithium concentration of 15.10 ng g^?1 with a standard deviation of 0.54 ng g^?1 dry weight was found. Analyses on serum samples from healthy individuals yielded lithium concentrations ranging from 0.22 to 0.97 μg l^?1.     

Trace determination of sulphur mustard and related compounds in water by headspace-trap gas chromatography–mass spectrometry

A method for trace determination of sulphur mustard (HD) and some of its cyclic decomposition compounds in water samples has been developed using headspace-trap in combination with gas chromatography–mass spectrometry (GC–MS). Factorial design was used for optimisation of the method. The trap technology allows enrichment and focusing of the analytes on an adsorbent, hence the technique offers better sensitivity compared to conventional static headspace. A detection limit of 1 ng/ml was achieved for HD, while the cyclic sulphur compounds 1,4-thioxane, 1,3-dithiolane and 1,4-dithiane could be detected at a level of 0.1 ng/ml. The method was validated for the stable cyclic compounds in the concentration range from the limit of quantification (LOQ: 0.2–0.4 ng/ml) to hundred times LOQ. The within and between assay precisions at hundred times LOQ were 1–2% and 7–8% relative standard deviation, respectively. This technique requires almost no sample handling, and the total time for sampling and analysis was less than 1 h. The method was successfully employed for muddy river water and sea water samples.     

高效液相色谱-电感耦合等离子体质谱法测定土壤和沉积物中Cr(Ⅲ)与Cr(Ⅵ)EI北大核心CSCD

Cr(III) and Cr(VI) were separated by high performance liquid chromatography by using EDTA-Naj as mobile phase. Oxygen was added to reduce the interference of40Ar12C on+52Cr in mass spectrometry. The results showed that the linear relationships of Cr(HI) and Cr(VI) were good in the concentration range of 0.5-100 μXg/L, and the correlation coefficients were 0.9997 and 0.9998, respectively. The method detection limits of Cr(TH) and Cr(VI) both were 0.1 μxg/L. The method was applied to determine standard substances of NSI Lab Solutions with three kinds of chromium speciation, and the results were agreement with the certified values. The recoveries were 91.9%-116.7% at three spiked concentrations. The method is suitable for the determination of water-soluble chromium in soil and sediment samples. © 2023, Youke Publishing Co.,Ltd. All rights reserved.     

Application of electrospray ionization mass spectrometry for studies of anionic σ-adducts of aromatic nitrocompounds

It has been found that anionic σ-adducts formed in the reactions of highly electrophilic nitroarenes with selected carbanions, alkoxide anions and amines can be transferred to the gas phase using an electrospray ion source and the resulting ions can be studied using various mass spectrometry techniques in the solvent-free environment. This method can also be used for estimating the relative equilibrium constants of the σ-adduct formation reactions in a liquid phase.