从头计算研究乙酰胆碱构象和分子静电势

在Hartree－Fock和二级Moller－Plesset微扰理论MP2水平，用6－31G对乙酰胆碱进行了从头计算研究，发现了旁式和反式两种稳定构象．经零点振动能校正后，在Hartree－Fock级别旁式较反式稳定0．24kJ·mol~(-1)；而在MP2级别，反式较旁式稳定2．07kJ·mol~(-1).谐振动频率在HF／6－31G水平计算.还给出了两种构象的MP2分子静电势图.     

Conformational stability and vibrations of aminopropylsilanol molecule

Density functional theory (DFT), using the B3-LYP/6-31G(d,p) method have been used to investigate the conformation and vibrational spectra of aminopropylsilanetriol (APST) NH2CH2CH2CH2Si(OH)3. The potential function for CCCSi torsion gives rise to two distinct conformers trans and gauche. The predicted energy of the more stable trans conformer is 337 cm-1 less than the energy of gauche conformer. The calculated barriers to the conformation interchange are: 1095, 2845 and 438 cm-1 for the trans to gauche, gauche to gauche and gauche to trans conformers, respectively. For the trans conformer the potential energy curve for the Si(OH)3 groups torsion in APST has been calculated changing the HOSiC dihedral angle. The barrier for the internal rotation of 3065 cm-1 has been obtained. The optimized molecular structure of APST dimer calculated for trans conformer has a SiOSi angle of 143.2 degrees, and a SiOSi bond length of 0.164 nm. A complete vibrational assignment for both conformers as well as for trans-dimer is supported by the normal coordinate analysis, calculated IR intensities as well as Raman activities. On the basis of the results, the vibrational spectra of APST aqueous solution and APST polymer have been analyzed. The average error between the observed and calculated frequencies is 14 cm-1.     

Trifluoromethanesulfenyl acetate, CF3S-OC(O)CH3, and trifluoromethanesulfenyl trifluoroacetate, CF3S-OC(O)CF3: unexpected conformational properties

Structural and conformational properties of two sulfenyl derivatives, trifluoromethanesulfenyl acetate, CF3S-OC(O)CH3 (1), and trifluoromethanesulfenyl trifluoroacetate, CF3S-OC(O)CF3 (2), were determined by gas electron diffraction, vibrational spectroscopy, in particular with IR (matrix) spectroscopy, which includes photochemical studies, and by quantum chemical calculations. Both compounds exist in the gas phase as a mixture of two conformers, with the prevailing component possessing a gauche structure around the S-O bond. The minor form, 15(5)% in 1 and 11(5)% in 2 according to IR(matrix) spectra, possesses an unexpected trans structure around the S-O bond. The C=O bond of the acetyl group is oriented syn with respect to the S-O bond in both conformers. UV-visible broad band irradiation of 1 and 2 isolated in inert gas matrixes causes various changes to occur. Conformational randomization clearly takes place in 2 with simultaneous formation of CF3SCF3. For 1 the only reaction channel detected leads to the formation of CH3SCF3 with the consequent extrusion of CO2. Quantum chemical calculations (B3LYP/6-31G and MP2 with 6-31G and 6-311G(2df,pd) basis sets) confirm the existence of a stable trans conformer. The calculations reproduce the conformational properties for both compounds qualitatively correct with the exception of the B3LYP method for compound 2 which predicts the trans form to be prevailing, in contrast to the experiment.     

Molecular orbital studies of conformers and the barrier to internal rotation in 1,3-butadiene

The potential curve for rotation around the central bond in 1,3-butadiene has been estimated by ab initio calculations using Gaussian-type basis functions. The calculations, which also include limited geometry variation during rotation, suggest that in the SCF approximation the second stable form of the molecule is a gauche conformation rather than a cis. The predicted energy difference between the planar trans ground state and the stable gauche form is 2.7 kcal/mole and the barrier to internal rotation is found to be 6.0 kcal/mole using a (9,5) basis for carbon and 4s functions on hydrogen.     

氧杂环丁烷热解机理的量子化学研究

本文利用半经验分子轨道理论研究了氧杂环丁烷热解为甲醛和乙烯的反应机理计算是采用半经验方法AM1进行的, 各种驻点全部运用Berny梯度方法优化. 同时, 对过渡态的结构进行了振动分析的确证. 计算表明: 1)不存在协同的同面-同面反应途径的过渡态, 其驻点只是一个二级鞍点; 2) 协同的同面-异面反应途径需要经过一个能量很高的过渡态; 3)有利的反应途径是包含了双自由基中间体的分步过程。     

Rotation about the C?N bond in 2-aza-1,3-butadiene and the N?N bond in 2,3-diaza-1,3 butadiene: A molecular orbital study

The geometry and energy of 2-aza-1,3-butadiene and 2,3-diaza-1,3-butadiene have been calculated using the 6-31G* basis set as a function of the CNCC and CNNC dihedral angles, respectively. With the 2-aza derivative potential minima are located at 0° (trans) and at about 130° for a gauche structure approximately 9.5 kJ mol^?1 less stable than the trans. Potential maxima are at about 75° giving a gauche barrier height of approximately 19 kJ mol^?1 relative to the trans structure, and at 180° (cis) giving a barrier height of approximately 14.5 kJ mol^?1 relative to the 130° gauche structure. With the 2,3-diaza derivative the gauche barrier has disappeared and there are a series of gauche structures in the region 70°–100° of almost equal energy 12.5-15 kJ mol^?1 less stable than the trans. In addition the cis barrier is much greater, nearly 70 kJ mol^?1 relative to the trans structure. Inclusion of electron correlation, accounting for about 50% of the correlation energy, produces no significant changes in the shape of the potential energy curves. There are systematic and progressive changes in almost all the geometrical parameters as the ?CH? groups in butadiene are replaced by ?N? . The outward tilt and compression within the methylene groups show adverse steric interactions to be operative in the cis structures. The values of V_nn indicate that gauche structures of both the 2-aza and the 2,3-diaza derivatives near the cis structure are more compact (as with butadiene), and gauche structures of the 2-aza derivative near the trans structure are less compact (as with butadiene). Originating in the changes in bond lengths and bond angles, rotation-independent nuclear–nuclear interactions again play an important role.     

Spectra and structure of silicon-containing compounds. XXX. Raman and infrared spectra,conformational stability,vibrational assignment of chloromethyl silyl dichloride

The Raman spectra (3200-30 cm(-1)) of liquid and solid, and infrared spectra of gaseous and solid chloromethyl silyl dichloride, ClCH2SiHCl2, have been recorded. Variable temperature (-105 to -150 degrees C) studies of the infrared spectra of the sample dissolved in liquid krypton have been carried out. From these data, the enthalpy difference was determined to be 363 +/- 40 cm(-1) (4.34 +/- 0.48 kJ mol(-1)), with the more stable form being the gauche conformer, which is consistent with the prediction from ab initio calculations at both the Hartree-Fock level and with full electron correlation by the perturbation method to second order. It is estimated that 92% of the sample is in the gauche form at ambient temperature. A complete vibrational assignment is proposed for the gauche conformer and several of fundamentals of the trans conformer based on infrared band contours, relative intensities, depolarization values, and group frequencies, which is supported by normal coordinate calculations utilizing the force constants from the ab initio MP2/6-31G(d) calculations. The r0 SiH bond distances of 1.476 and 1.472 A have been obtained for the trans and gauche conformers, respectively, from the silicon-hydrogen stretching frequencies. The optimized geometries have also been obtained from ab initio calculations utilizing several different basis sets with full electron correlation by the perturbation method up to MP2/6-311 + G(2d,2p). The results are discussed and compared to some corresponding results for several related molecules.     

Chlorocarbonyl trifluoromethanesulfonate, ClC(O)OSO2CF3: structure and conformational properties in the gaseous and condensed phases

Pure chlorocarbonyl trifluoromethanesulfonate, ClC(O)OSO(2)CF(3), has been prepared in about 58% yield by the ambient-temperature reaction between ClC(O)SCl and AgCF(3)SO(3). The conformational properties of the gaseous molecule have been studied by vibrational spectroscopy [IR(gas), IR(matrix), and Raman(liquid)] and quantum chemical calculations (HF and B3LYP with 6-31+G* basis sets); in addition, the solid-state structure has been determined by X-ray crystallography. ClC(O)OSO(2)CF(3) exists in the gas phase as a mixture of trans [ClC(O) group trans with respect to the CF(3) group] and gauche conformers, with the trans form being the more abundant [66(8)% from IR(matrix) measurements]. In both conformers, the C=O bond of the ClC(O) group is oriented synperiplanar with respect to the S-O single bond. The experimental free energy difference between the two forms, DeltaG degrees = 0.8(2) kcal mol(-1) (IR), is slightly smaller than the calculated value (1.0-1.5 kcal mol(-1)). The crystalline solid at 150 K [monoclinic, P2(1)/n, a = 7.3951(9) angstroms, b = 24.897(3) angstroms, c = 7.4812(9) angstroms, beta = 99.448(2) degrees, Z = 8] consists surprisingly of both trans and gauche forms. Whereas the more stable conformer for the more or less discrete molecules and the polarization effects would tend to favor the trans form, the packing effects would stabilize the gauche rotamer in the solid state.     

傅立叶变换红外光谱对琥珀酸-2-乙基己基磺酸钠非极性溶液中 反胶束结构的研究

利用衰减全反射傅立叶变换红外光谱(ATR-FTIR), 对琥珀酸-2-乙基己基磺酸钠(AOT)的反胶束结构进行了研究. 通过对红外光谱进行二维相关分析, 可以分辨出AOT分子在CCl4溶液中具有旁式和反式两种结构, 随着温度的升高, 旁式结构向反式结构转变, 反胶束体系能量降低, 38 ℃时, 反式结构所占比例达到最大值, 此时反胶束具有最大尺寸, 并处于最稳定的能量状态. 随着温度的进一步升高, 反式结构开始向旁式结构转变, 反胶束尺寸变小, 直至最后反胶束被破坏.     

CI calculations concerning the styrene cis-trans photoisomerization

Using minimal basis sets, the ionic and diradical excited states of the twisted styrene molecule have been calculated through extended CI, after appropriate SCF procedures. The lowest excited state is a diradical, and the photoisomerization should not involve the ionic state.     

Vibrational and conformational analysis of chloromethyldifluorophosphine,ClCH2PF2

The vibrational spectra of chloromethyldifluorophosphine have been recorded in the different physical states. Both gauche and trans conformers are identified in the spectra. Temperature dependent studies and calculated dipole moments (CNDO/2) indicate that the gauche conformer is more stable in the gas-phase while the trans is more stable in the liquid phase. In the solid phase, both conformers are present, although the trans strongly dominates.     

Conformation of drawn poly(trimethylene terephthalate) studied by solid-state 13C NMR

The change in the conformation of the flexible O-CH2-CH2-CH2-O segment of poly(trimethylene terephthalate) (PTT) monofilament caused by drawing was investigated by means of the gamma-gauche effect on the 13C solid-state NMR chemical shift of the internal methylene carbon, combined with the NMR relaxations. The conformation around the O-CH2 and CH2-O bonds for as-spun fiber was trans/trans. On drawing, followed by heat treatment, the conformation changed to gauche/gauche. The ratio of gauche/gauche to trans/trans for the drawn PTT fiber was determined quantitatively.     

Theoretical Study on Photoisomerization of 2-Methylfuran to 3-Methylfuran

1 INTRODUCTION 2-Methylfuran belongs to the basic heteroaromatic compounds relevant to many fields of modern che- mistry, ranging from the study of natural products and biologically active substances to the develop- ment of building blocks for organic synthesis and conducting polymers[1]. Since the photochemistry ofR-furan was gradually recognized in 1960s[2～7], lots of interest has been aroused. Herein we only study one branch of photoche- mistry of R-furan: the isomerization of 2-methy…     

草酰溴一价正离子(BrCO)+2几何构型及反应活性的DFT研究

用密度泛函方法BHandHIYP以6-311 G(d)和6-311 G(2df）为基组对草酰溴的一价正离子(BrCO)2^ 和中性分子(BrCO)2做了构象分析,结果表明,(BrCO)^ 2和(BrCO)2都具有平面反式和交叉式两种构象。交叉式构象存在超共轭现象。此外,对草酰溴离子、中性分子各解离通道初级反应的Gibbs自由能的计算,发现草酰溴离子C-C键解离通道的反应活性总体上大于中性分子,对该反应通道进一步做了反应机理研究,证实了热力学结论。     

Conformational stability from temperature-dependent fourier transform infrared spectra of noble gas solutions, r0 structural parameters, and barriers to internal rotation for ethylamine

Variable temperature (-55 to -145 degrees C) studies of the infrared spectra (3500 to 100 cm(-1)) of ethylamine, CH(3)CH(2)NH(2), dissolved in liquid krypton and/or xenon have been recorded. From these data, the enthalpy differences have been determined to be 54 +/- 4 cm(-1) (0.65 +/- 0.05 kJ/mol), with the trans conformer (methyl group relative to the lone pair of electrons on nitrogen) being the more stable form. It is estimated that there is 61 +/- 1% of the doubly degenerate gauche form present at ambient temperature. The conformational energetics have been calculated with the M?ller-Plesset perturbation method to the second order (MP2(full)) and the fourth order (MP4(SDTQ)) as well as with density functional theory by the B3LYP method utilizing a variety of basis sets. Basis sets with diffuse functions lead to incorrect prediction of the conformational stability. On the basis of the frequencies of the torsional transitions along with the determined experimental enthalpy difference and gauche dihedral angle, the potential function governing conformational interchange has been obtained, and the determined Fourier cosine coefficients are V(1) = -207 +/- 48, V(2) = 320 +/- 67, V(3) = 1072 +/- 25, V(4) = 55 +/- 11, and V(5) = -96 +/- 28 cm(-1), with a trans-to-gauche barrier of 1286 cm(-1), and a gauche-to-gauche barrier of 715 cm(-1). The 3-fold methyl rotational barriers have been determined to be 1241 +/- 4 and 1281 +/- 10 cm(-1) for the gauche and trans conformers, respectively. By utilizing the previously reported microwave rotational constants combined with the structural parameters predicted at the MP2(full)/6-311+ G(d,p) level, adjusted r(0) structural parameters have been obtained. A complete vibrational assignment is given for the trans conformer, which is supported by normal coordinate calculations utilizing scaled force constants from ab initio B3LYP/6-311++G(3df,3pd) calculations. Proposed assignments are also made for the fundamentals of the gauche conformer. The results of these spectroscopic and theoretical studies are discussed and compared to the corresponding results for similar molecules.     

Anomeric effect in phosphate moieties of carbohydrates: An Ab initio study

Ab initio SCF MO calculations at the STO -3G level have been carried out on CH₂OHOPO₃^?H and CH₂OHOPO₃^2?, which have been considered as model systems for the Cl-phosphate moiety of sugars. The results predict higher anomeric energy for the phosphate moiety at Cl atom of pyranosides. Also a trans arrangement of the exocyclic O—P bond is preferred rather than a gauche arrangement, thus exhibiting a reverse exo-anomeric effect. A complete potential energy map has been constructed for CH₃OPO₃^?H, a model system for C6-phosphate moiety. It is seen that the bond angle optimization brings down the relative energies of various conformations. The effect of the phosphate group on the preferred conformation of phosphate containing polysaccharides is also discussed.     

Gas phase study of the trans and gauche rotamers of 1,2-dicyanoethane, novel 1,2-dicyanodisilane and cyano(cyanomethyl)silane by ab initio and density functional methods

The gauche and trans rotamers of 1,2-dicyanoethane, novel 1,2-dicyanodisilane and cyano(cyanomethyl)silane have been studied theoretically in the gas phase. The methods used are second order M?ller-Plesset theory (MP2) and density functional theory (DFT). The basis set used is 6-311++G(d,p) for all atoms. B3LYP is the functional used for the DFT method and G2/MP2 calculation has also carried out using the MP2 optimised structure. All calculations have been done using Gaussian 03W. All structures have been fully optimised and the optimised geometries, dipole moments, moment of inertia and energies are reported. Energies of the optimised structures have been used to obtain the energy difference (DeltaE) between the trans and gauche rotamers. The optimised structures have been used for calculations of vibrational frequencies and these frequencies are reported with appropriate assignments. The computed parameters for 1,2-dicyanoethane compare satisfactorily with experimental literature values. However, the literature for 1,2-dicyanodisilane and cyano(cyanomethyl)silane, in terms of conformational studies, is limited and therefore the data of this work should also be appropriate for them. The results indicate that in general, the energy difference for these molecules is in the order 1,2-dicyanoethane>cyano(cyanomethyl)silane>1,2-dicyanodisilane.     

Theoretical Gas Phase Study of the Gauche and Trans Conformers of 1-Bromo-2-Iodoethane and Solvent Effects

This is a gas-phase study of the gauche and trans conformers of 1-bromo-2-iodoethane. The methods used are the second-order Møller-Plesset theory (MP2) and density functional theory (DFT). The functional used for the DFT method is B3LYP and the basis sets used are 6-311++G(d,p) for all atoms except that different basis sets, namely 3-21G, LANECP, CRENBL ECP, Stuttgart RLC ECP and 6-311G(d,p), have been explored for the iodine atom. The results indicate that the trans conformer is preferred. The energy difference between the gauche and trans conformers (ΔE _g?t) and related thermodynamic parameters are reported. The ΔE _g?t values are 12.50 kJ?mol^?1 (B3LYP) and 10.00 kJ?mol^?1 (MP2) with the basis sets being 6-311++G(d,p)[C,H,Br]/6-311G(d,p)[I]. The conformers of 1-bromo-2-iodoethane have also been subjected to vibrational analysis. The results from the two theoretical levels are in good agreement but they are not much affected by the basis set of the iodine atom. The study has been extended to explore solvent effects using Self-Consistent Reaction Field methods. The structural parameters of the conformers are little affected by the polarity of the solvent but ΔE _g?t decreases and the solvation Gibbs energy increases with increasing polarity of the solvent.     

Theoretical studies of the solvent effect on the conformation of the HO-C-C-X (X = F, NH2, NO2) moiety with competing intra- and intermolecular hydrogen bonds

Theoretical calculations up to the ab initio IEF-PCM/CCSD(T)/CBS//IEF-PCM/B3LYP/6-311++G** and IEF-PCM/B97D/aug-cc-pvtz levels have been performed for 2X-ethanol and 2X-phenol systems with X = F, NH(2), NO(2) in chloroform and aqueous solution. The calculated relative free energies by means of the IEF-PCM continuum dielectric method do not differ very much at the DFT and ab initio levels. Application of explicit solvent models and the FEP/MC method for determining relative solvation free energies causes, however, large deviations in the predicted equilibrium compositions, although the predominant conformation for the solute is generally in agreement with that from the corresponding IEF-PCM calculations. Existence of an intramolecular hydrogen bond (HB structure) for species with the HO-C-C-X moiety is preferred compared with a conformation when the hydrogen bond is disrupted (NoHB) for the considered F- and NO(2)-substituted molecules both in chloroform and aqueous solution. For 2NH(2)-ethanol, the HB structure is predominant in chloroform, whereas the 93:7 ratio for the OCCN trans/gauche species was obtained in aqueous solution. 2NH(2)-phenol exhibits a subtle equilibrium of the HB and NoHB conformations in both solvents. Potential of mean force calculations predict about a 10% solute association for the trans 2NH(2)-ethanol solute even in the fairly dilute 0.22 molar solution, whereas direct MC simulations do not support the maintenance of a doubly hydrogen-bonded dimer. Aqueous solution characteristics, as coordination numbers and numbers of strongly bound water molecules to the solute at T = 298 K and p = 1 atm, correspond reasonably to the derived molecular structures.     

Conformational equilibrium of 1,2-dichloroethane in water: comparison of PCM and RISM-SCF methods

The RISM-SCF and polarizable continuum model (PCM) approaches have been applied to study the conformational equilibrium of 1,2-dichloroethane (DCE) in water. Both the electron correlation effect and basis sets play an important role in the relative energies of the gauche and trans conformers in gas and solution phases. Both PCM and RISM-MP2 methods resulted in a consistent trend with the previous experimental and theoretical studies that the population of the gauche conformer increases in going from the gas phase to the aqueous solution. However, the PCM treatment could not describe the solvent effect completely in that the sign of the relative free energy of the gauche and trans forms is opposite to the most recent experimental and theoretical data, while the RISM-MP2 gives the right sign in the free energy difference. We found that the larger excess chemical potential gain (by ca. -4.1 kcal/mol) for the gauche conformer is large enough to result in the gauche preference of DCE in water, though it has to compensate for more solute reorganization energy (approximately 1.6 kcal/mol) and overcome the energy difference (approximately 1.6 kcal/mol) in the gas phase. The radial distribution functions between DCE and the nearest water shows that the electrostatic repulsion between chlorine and oxygen atoms is higher in the trans conformer than in the gauche one, while the attractive interaction between chlorine and hydrogen of water is higher in the gauche conformer.