Ab initioSCF MO calculations on the reactions of hydroxyl radical with imidazole and monoprotonated imidazole

The addition reactions of hydroxyl radical with imidazole and its protonated form to yield radical adducts have been investigated by ab initio SCF MO methods using STO -3G and 4-31G basis sets. Analogous radical species are of importance in radiation damage to biological systems. Of the possible radical products, the calculations indicate that the allylic species are generally favored energetically over the nonallylic forms. On an energetic basis, the results show that the allylic adducts formed by addition at the C2 and C5 positions are about equally favorable. Although the C5 species is generally identified as the experimentally observed product in aqueous media for both protonated and unprotonated imidazole, some experimental evidence exists indicating the presence of other forms. Our results suggest that this other form is the C2 adduct. The calculations also point to the protonated form of imidazole being less reactive than imidazole, which is in accord with experimental observations.     

Electronic structure of perimidine

The electronic configurations and dipole moments of the ground and excited states of perimidine, imidazole, and benzimidazole were calculated by means of the self-consistent-field molecular orbital (SC F MO) method using the Pariser-Parr-Pople (PPP) approximation. The reactivity of perimidine is discussed. The results of the calculations by the PPP method are compared with earlier calculations based on the simple MO method. An interpretation of the electronic spectrum of perimidine is given.Translated from Khimiya Geterotsiklicheskikh Soedinenii, No. 5, pp. 678–681, May, 1971.     

咪唑在银表面吸附的理论分析

本文用EHMO紧束缚方法计算了咪唑在银(1,1,1)面上吸附的四种构型和吸附态的电子结构,得到咪唑在银表面上的优化构型为直立桥位吸附.按该方式,咪唑环上吡啶型氮原子的P轨道和邻近Ag原子s轨道之间形成多中心σ键.咪唑环上各原子的电荷布居在吸附后有较大的变化,表现出电子由银表面向咪唑转移,并进而使得环上N-H键解离能从吸附前的519.4kJ·mol^-1降低到吸附后的70.34kJ·mol^-1.这与实验中观察到的咪唑N-H键在Ag表面极易断裂的事实相符.     

On the electrical conductivity of hydrogen bonded biological systems

The LCAO MO method with Bloch eigenfunctions has been applied to the imidazole crystal to evaluate the anisotropy of current carriers mobilities. The results obtained for the exponent of 0.45 of the 2p hydrogen orbital of the hydrogen bond implied in the calculation are in qualitative agreement with experimental data for electrical conductivity. The possible role of the 2p hydrogen orbital of the hydrogen bond for the charge transfer of biological systems is pointed out.     

Calculation of the 14N and 2H quadrupole coupling tensor in trimeric imidazole

The ¹⁴N and ²H quadrupole coupling tensors at both nitrogen and at all hydrogen sites, have been calculated by ab initio SCF MO methods, in a trimeric imidazole molecule having the geometry found in the solid state. The ¹⁴N changes produced at N(1)H by hydrogen bonding are correctly reproduced to a noteworthy degree of precision, as is the ²H quadrupole interaction at the same site. The changes in the values of the three principal components of the tensor, which have been inferred from NQR measurements when imidazole passes from the gas to the solid state, are supported by the calculations, both for N(1)H and N(3).     

Active-site α-helix in papain and the stability of the ion pair RS− ··· ImH+. Ab initio molecular orbital study

Ab initio MO calculations, using both minimal (STO -3G) and extended (Roos–Siegbahn) basis sets are reported for the systems methanethiol–imidazole, methanethiol–imidazole–formaldehyde, and methanethiol–imidazole–formamide, which, together with a point-change representation of a long α-helix, form models for the active site of papain. It is shown that the large electric field exerted by the helix in the active-site region is responsible for the presence of the essential residues Cys 25 and His 159 in the form of an ion pair RS^? ··· ImH⁺, which is crucial for a recently proposed mechanism for the catalytic action of the enzyme. Also, an explanation is given for the anomalies in measured pK values for these residues. Detailed studies on the (sub)systems show that minimal basis sets lack the flexibility necessary for describing the type of proton transfer involved. We conclude that α-helices are essential parts of enzymes and that they play a significant role in the catalytic process.     

The electronic structure and spectra of Ru(II) and Ru(III) complexes with imidazole and its derivatives

The calculations of the electronic structure and spectra of [Ru(NH3)5L]2+ (L = imidazole, histidine) and [Ru(NH3)5L]3+ (L = imidazole, N-imidazolate anion, 4-methylimidazole, 4-methyl-1N-imidazolate anion and 1N-bound histidine) complexes are performed in the framework of the CI method in the INDO/CNDO approximation. The MO diagram is obtained. The assignment of all transitions with energies of 4-5 eV is made and the nature of corresponding excited states is discussed. For the Ru(II) complexes, the lower energy observable transition is assigned to d-->pi* type, whereas the higher energy one is assigned to pi-->pi* type. In the spectra of the Ru(III) complexes with charged ligands both transitions are of pi-->d character, while in the case of uncharged ligands, the higher energy transition mostly incorporates pi-->pi* excitations.     

Direct evidence for the role of imidazole in disproportionation of hydrogen peroxide by a mononuclear manganese salen complex

It has long been known that imidazole can enhance the catalytic activity of catalase model compounds; however, the role of imidazole is still not well understood. In an attempt to elucidate the role of imidazole in promoting the disproportionation of hydrogen peroxide by model compounds, four mononuclear manganese salen (Mn-Salen) complexes with and without axial imidazole ligands were synthesized and characterized by single-crystal X-ray diffraction, UV–vis spectroscopy, electrochemical and HPLC measurements. By comparing the Mn-Salen compounds with and without imidazole ligands, we demonstrated that the activity enhancement of imidazole originated from coordination of imidazole to the manganese center when less than one equivalent of imidazole was present, and from assisted deprotonation of the substrate when excess imidazole was present. These results provide direct evidence for the mechanism of activity enhancement of imidazole in the catalysis of enzyme model compounds.     

Acid Dissociation Constants of the Benzimidazole Unit in the Polybenzimidazole Chain: Configuration Effects

The acid dissociation constant of three benzimidazoles, namely 2,2′-bibenzo[d]imidazole, 2,5′-bibenzo[d]imidazole, and 5,5′-bibenzo[d]imidazole, have been investigated by means of density functional theory calculations in gas phase and in aqueous solution. The theoretical approach was validated by the comparing of predicted and experimentally determined pK_a values in imidazole, benzimidazole, and 2-phenylbenzimidazole. From the studied compounds, 2,2′-bibenzo[d]imidazole was found to be the most acidic, which made it a valuable candidate as a material for polymer electrolyte membrane fuel cells.     

Influence of Host's Substitution on the Orientation of the Guest: Pseudo-rotaxanes of Charged Cyclodextrins with Methyl Orange in Solution

Methyl Orange (MO), an azo-dye molecule with an inherent dipole moment, has been used as a probe to explore the influence of anionic or cationic substituents of cyclodextrins (CDs) on the mode of insertion to form pseudorotaxanes, using NMR spectroscopy. MO is oriented in a single mode inside the βCD cavity, with the dimethylamino group localized at the secondary side. This orientation is completely reversed when MO enters the anionic sodium heptakis[6-deoxy-6-(3-thiopropionate)]-βCD (βpsp) cavity, whereas inside the cationic heptakis(6-deoxy-6-amino)-βCD hydrochloride, MO flips once more, to adopt the same orientation as in βCD. In the latter case the water solubility of MO is significantly lowered. The disposition of the guest in βCD and in each βCD derivative in a single mode was attributed principally to anti-parallel dipole-dipole stabilization. In the wider γCD, the availability of more cavity space leads to 1:2 and 2:2 host/guest stoichiometries and the effect of dipoles is of secondary significance. In the anionic sodium octakis[6-deoxy-6-(3-thiopropionate)]-γCD, MO is positioned as in βpsp, but a 1:2 adduct is also detected. Finally, MO does not dissolve in octakis(6-deoxy-6-amino)-γCD hydrochloride solution.     

On the microstructures of ethyl acetate/monoolein/water

A phase diagram, describing the behavior of the polar lipid monoolein (MO), water, and ethyl acetate (EtAc), is here presented as well as results from small angle X-ray scattering. MO is found to have a solubility of 60 wt.% in EtAc at 20 °C. No macroscopic aggregation of MO can, initially, be detected in the binary MO/EtAc solution even though MO forms solid crystals in concentrated samples when times goes by. In case of the ternary system small amounts of water, mainly bound to the lipid head groups, can be incorporated in the liquid EtAc/MO phase as water has a limited solubility in EtAc. For EtAc/water mass ratios below 2/3 EtAc is present into the reversed bicontinuous cubic and lamellar phases present in the binary MO/water system. To conclude, EtAc is mainly partitioned to the lipid membranes, with minor effects on spontaneous curvature. Hence, simple EtAc-addition has an effect similar to dehydration. For EtAc/water ratios above 2/3 the liquid crystalline phases dissolve. The phase behavior is here discussed in view of related phase behaviors for water-miscible solvent/MO/water systems. For instance, an interpretation of the swelling behavior of the sponge phase (L₃), present in the water-miscible solvent(s)/MO/water systems, shows that solvents partitioned to the polar domains strongly increases the spontaneous curvature of the MO-films. The reason is probably weaker hydrophobic interactions in interfacial regions. As expected, in case of water-miscible solvents, the ternary phase behaviors can be understood by consider water and water-miscible solvent as one “mixed solvent”.     

On the microstructures of ethyl acetate/monoolein/water

A phase diagram, describing the behavior of the polar lipid monoolein (MO), water, and ethyl acetate (EtAc), is here presented as well as results from small angle X-ray scattering. MO is found to have a solubility of 60 wt.% in EtAc at 20 °C. No macroscopic aggregation of MO can, initially, be detected in the binary MO/EtAc solution even though MO forms solid crystals in concentrated samples when times goes by. In case of the ternary system small amounts of water, mainly bound to the lipid head groups, can be incorporated in the liquid EtAc/MO phase as water has a limited solubility in EtAc. For EtAc/water mass ratios below 2/3 EtAc is present into the reversed bicontinuous cubic and lamellar phases present in the binary MO/water system. To conclude, EtAc is mainly partitioned to the lipid membranes, with minor effects on spontaneous curvature. Hence, simple EtAc-addition has an effect similar to dehydration. For EtAc/water ratios above 2/3 the liquid crystalline phases dissolve. The phase behavior is here discussed in view of related phase behaviors for water-miscible solvent/MO/water systems. For instance, an interpretation of the swelling behavior of the sponge phase (L₃), present in the water-miscible solvent(s)/MO/water systems, shows that solvents partitioned to the polar domains strongly increases the spontaneous curvature of the MO-films. The reason is probably weaker hydrophobic interactions in interfacial regions. As expected, in case of water-miscible solvents, the ternary phase behaviors can be understood by consider water and water-miscible solvent as one “mixed solvent”.     

Lithiation and Alkylation of the Imidazole Backbone

A concise improved method for the alkylation of the imidazole backbone has been developed. The positions 1 and 2 of the imidazole ring were protected with tetrahydro-2H-pyran-2-yl and chloro groups, respectively. Position 5 of imidazole was then lithiated, whereupon alkylation could be conducted by means of a variety of electrophilic reagents including haloalkanes, aldehydes, and ketones. Finally, the two protective / auxiliary groups on the positions 1 and 2 were easily removed by means of treatment with acid and base and hydrogenation, respectively. The developed method proved good functional group tolerance but demanded non-bulky molecular moieties in the vicinity of the attaching C-atom of the reagent. The novel alkylating method was used to synthesize two new NHC−Ag complexes holding branched alkyl groups on the imidazole backbone.     

Synthesis of surface molecularly imprinted polymer and the selective solid phase extraction of imidazole from its structural analogs

A surface molecularly imprinted polymer (MIP) was synthesized by using imidazole as the template and modified silica particles as the support material. The static adsorption, solid phase extraction (SPE) and high-performance liquid chromatography (HPLC) experiments were performed to investigate the adsorption properties and selective recognition characteristics of the polymer for imidazole and its structural analogs. It was shown that the maximum binding capacities of imidazole on the MIP and the non-imprinted polymer (NIP) were 312 and 169 μmol g⁻¹, respectively. The adsorption was fast and the adsorption equilibrium was achieved in 30 min. The binding process could be described by pseudo-second order kinetics. Compared with the corresponding non-imprinted polymer, the molecularly imprinted polymer exhibited much higher adsorption performance and selectivity for imidazole. The selective separation of imidazole from a mixture of 1-hexyl-3-methylimidazolium bromide ([C₆mim][Br]) and 2,4-dichlorophenol could be achieved on the MIP-SPE column. The recoveries of imidazole and [C₆mim][Br] were 97.6-102.7% and 12.2-17.3%, respectively, but 2,4-dichlorophenol could not be retained on the column. The surface molecularly imprinted polymer presented here may find useful application as a solid phase absorbent to separate trace imidazole in environmental water samples. This may also form the basis for our research program on the preparation and application of alkyl-imidazolium imprinted polymers.     

Non-empirical calculations of the nuclear magnetic resonance spectra of imidazole and hydrated imidazole

The magnetic shielding constants of the ¹H, ¹³C and ¹⁵N nuclei of imidazole are calculated for the isolated and hydrated molecules. The results show that the hydrogen bonds produce not only large variations of the chemical shifts for the nitrogen nuclei and the NH proton which are directly involved in the intermolecular bonding, but also measurable shifts for the carbon nuclei. The calculated shielding constants and their variation with hydration are discussed in relation to experimental results concerning imidazole, the 5-membered ring of the purine bases and the imidazole ring of histidine. The calculated values of the spin-spin coupling constants confirm that it is possible to study the tautomeric equilibrium of the imidazole ring from the measurement of these coupling constants and that spin-spin coupling constants are not very sensitive to solvent effects.     

Protonation of pyrrolo[1,2-a] imidazole derivatives

The protonation of a number of pyrrolo[1,2-a]imidazole derivatives in trifluoroacetic acid was studied by PMR spectroscopy. The 5,7-unsubstituted compounds form a mixture of two forms of cations, the structures of which correspond to the addition of a proton to the C₅ and C₇ atoms of the two-ring system with predominance (60–90%) of the 5-C cation. The introduction of a CH₃ group into the 5 position changes the direction of protonation to favor predominant (95%) formation of the 7-C cation. The 7-methyl derivatives of pyrroloimidazole are protonated exclusively at the C₅ atom. It is demonstrated that the basicity of the pyrroloimidazoles considerably surpasses the basicity of indolicine derivatives. The comparative proton-acceptor capacity of these systems is compared with the energy indexes and the reactivity indexes calculated by the simple MO LCAO method.Translated from Khimiya Geterotsiklicheskikh Soedinenii, No. 4, pp. 492–497, April, 1972.     

A multi-coincident study of the quasimolecular 1s σ radiation and its angular distribution in 40 MeV Ni-Ni collisions

The production mechanism of quasimolecular (MO) x-rays in 40 MeV Ni-Ni collisions was investigated in a multi-parameter experiment. Impact parameter dependent MO x-ray production probabilities were determined. The study of the angular distribution of the emitted radiation allowed the determination of impact parameter dependent alignment parameters for this process. Triple coincident MO x-ray — NiK x-ray — scattered projectile data provided for the determination of state selective MO x-ray production probabilities. The results are compared to dynamical calculations describing the time dependent evolution of the relevant quasimolecular states and the radiative couplings among them.     

A study of imidazole by the proton magnetic resonance method

The concentration dependence of the chemical shifts of the protons of imidazole in six polar organic solvents and water has been studied. In aqueous solutions an exchange of the NH protons between the imidazole and the water molecules takes place. In organic solvents, the position and half-width of the NH line of imidazole depend on the concentration. With an increase in the concentration, this line shifts in the downfield direction. The shift (1 ppm for a solution of imidazole in DMSO) may be due to the formation of an ordinary hydrogen bond (> NH N ) between the imidazole molecules.Translated from Khimiya Geterotsiklicheskikh Soedinenii, Vol. 6, No. 6, pp. 810–813, June, 1970.     

A robust UV–visible light‐driven SBA‐15‐PS/phthalhydrazide nanohybrid material with enhanced photocatalytic activity in the photodegradation of methyl orange

SBA‐15‐PS/phthalhydrazide (PHD) is presented as a new heterogeneous inorganic–organic nanohybrid photocatalyst with high stability, superior recyclability and remarkable performance in the degradation of methyl orange (MO). Distinctive parameters, including photocatalyst and dye concentrations, pH and degradation time, were assessed for MO degradation catalysed by SBA‐15‐PS/PHD. This new heterogeneous nanocatalyst was characterized using Fourier transform infrared and UV–visible spectroscopies, thermogravimetric analysis, scanning and transmission electron microscopies and elemental analysis. Photodegradation of MO of up to 92% under the optimum conditions (photocatalyst = 0.015 g, [MO] = 4 ppm, pH = 2) was accomplished in 25 min using SBA‐15‐PS/PHD. A preliminary kinetic investigation was performed, and pseudo‐first‐order kinetics with a high rate constant (0.068 min^?1) was found for MO degradation. Additional results showed that the photodegradation of MO was increased in the presence of hole scavengers. Therefore a photoreduction mechanism for MO degradation is proposed.     

Adsorption behaviors of DPPC/MO aggregates on SiO2 surfaces

The adsorption kinetics of extruded 1,2-dipalmitoyl- sn-glycero-3-phosphatidylcholine (DPPC)/1-(cis-9-octadecenoyl)- rac-glycerol (monoolein, MO) aggregates on SiO 2 surface at 25 degrees C is investigated in real time, using the dissipative quartz crystal microbalance (QCM) technique. Four adsorption pathways have been identified depending on the molar fraction of MO in the DPPC/MO system: (I) intact vesicle adsorption, (II) vesicle reorganization on a SiO 2 surface, (III) supported lipid bilayer (SLB) formation, and (IV) cubosome adsorption. The results can be understood by the fact that DPPC is a lamellar phase-forming lipid, whereas MO prefers the cubic phase. Therefore, the incorporation of MO in DPPC increases the packing parameter. Equally important, MO also increases the mobility of lipid molecules and lateral pressure in the bilayers as a result of the presence of a unique cis- double bond. Before extrusion, the vesicles size increases with the MO content when X MO or= 0.8. The extruded DPPC/MO suspensions consist of reformed vesicles for X MO or= 0.8, all with a uniform diameter of approximately 100 nm. Differential scanning calorimetry (DSC) further indicates that the addition of MO lowers the main phase transition temperature of DPPC and thus makes the hydrophobic interior more fluid.